mRNA_F-serratus_M_contig648.17419.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig648.17419.1
Unique NamemRNA_F-serratus_M_contig648.17419.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig648.17419.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.570e-18
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   37 VAYLVGVVDRPISERSGMWKRRVSNFRDGLVRIISLTAIKIVLVSWQIITQFSSVVNVQYPPAYEKFLAALDVVNLNLGSILS 285
            +A LV VVD    + +  W +R+++ RD +V+ + LT+IKIV+V+WQI+TQFSSVVNV YP  YE FLA L+VVN +LG +LS
Sbjct:  702 IADLVRVVDEVEPDTASTWGKRLTSCRDRIVKAVPLTSIKIVVVAWQIVTQFSSVVNVVYPDIYESFLAVLNVVNFDLGFLLS 784          
BLAST of mRNA_F-serratus_M_contig648.17419.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 5.320e-16
Identity = 38/65 (58.46%), Postives = 53/65 (81.54%), Query Frame = 1
Query:   91 WKRRVSNFRDGLVRIISLTAIKIVLVSWQIITQFSSVVNVQYPPAYEKFLAALDVVNLNLGSILS 285
            W +R+++ R+ +  ++ LT+IKIVLV+WQI+TQFSSV+NV YP  YE+FL+ L+VVN NLG ILS
Sbjct:    9 WGKRLTSCRERITNVVPLTSIKIVLVAWQIVTQFSSVLNVVYPGVYERFLSVLNVVNFNLGFILS 73          
BLAST of mRNA_F-serratus_M_contig648.17419.1 vs. uniprot
Match: A0A6H5L874_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L874_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.920e-16
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = 1
Query:   25 VIFGVAYLVGVVDRPISERS-GMWKRRVSNFRDGLVRIISLTAIKIVLVSWQIITQFSSVVNVQYPPAYEKFLAALDVVNLNLGSILSL 288
            V+F  A LV VV+   S ++   W+R+ S +R  + +I+ LTAIKIV+V WQI+TQ+S V  V+YP AY+ FL+ +DVVNL+LG ILSL
Sbjct:  540 VVFLAAKLVSVVEMTPSRKAPSRWQRKRSVWRARIKKILPLTAIKIVVVVWQIVTQYSDVAGVEYPGAYKDFLSVIDVVNLDLGFILSL 628          
BLAST of mRNA_F-serratus_M_contig648.17419.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.340e-15
Identity = 47/95 (49.47%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    7 VVVIIVVIFGVAYLVGVVDR-PISERSGMWKRRVSNFRDGLVRIISLTAIKIVLVSWQIITQFSSVVNVQYPPAYEKFLAALDVVNLNLGSILSL 288
            V+V++ V+F  A LV VV+  P S+    W+++ S ++  + +I+ LTAIKIV+V WQI+TQ+S V  V+YP AY+ FL+ +DVVNL+LG ILSL
Sbjct:  676 VLVLLAVVFMAAKLVSVVETTPSSKAPSRWQQKRSVWQARMKKILPLTAIKIVVVVWQIVTQYSDVAGVEYPGAYKDFLSVVDVVNLDLGFILSL 770          
BLAST of mRNA_F-serratus_M_contig648.17419.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.560e-15
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   46 LVGVVDRPISERS--GMWKRRVSNFRDGLVRIISLTAIKIVLVSWQIITQFSSVVNVQYPPAYEKFLAALDVVNLNLGSILS 285
            LV VVD     +S  G W+R +S  RD +   I LTAIKI+LV WQI+TQF+SVV+V+YP  YE+FLAAL++VN NLG  LS
Sbjct:    8 LVRVVDDGDGTKSRVGKWERFLS-CRDAIAAAIPLTAIKIILVVWQIVTQFASVVDVEYPEIYERFLAALNLVNFNLGYFLS 88          
BLAST of mRNA_F-serratus_M_contig648.17419.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.620e-14
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   37 VAYLVGVVDRPISERSGMWKRRVSNFRDGLVRIISLTAIKIVLVSWQIITQFSSVVNVQYPPAYEKFLAALDVVNLNLGSILS 285
            +A LV VVD   +       + +++ R+ +   I LT+IKIVLV+WQI+TQFSSVVNV YP  YEKFL+ L++VN N G ILS
Sbjct:   26 IANLVRVVDDDNTGTVSACGKTLNSLRNRIANGIPLTSIKIVLVAWQIVTQFSSVVNVVYPDVYEKFLSILNLVNFNFGFILS 108          
BLAST of mRNA_F-serratus_M_contig648.17419.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.000e-13
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   37 VAYLVGVVD--RPISERSGMWKRRVSNFRDGLVRIISLTAIKIVLVSWQIITQFSSVVNVQYPPAYEKFLAALDVVNLNLGSILS 285
            V+ LV VV+   P  + S  W+R  S ++  + + + LTA+KIV+V WQI+TQ+S V  V+YP AY+ FL+ +DVVNL+LG ILS
Sbjct:  680 VSRLVSVVEVGPPQQQGSKGWRRTCSAWQARVRQTVPLTAVKIVVVVWQIVTQYSDVAGVEYPGAYQDFLSVVDVVNLDLGFILS 764          
BLAST of mRNA_F-serratus_M_contig648.17419.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.130e-11
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   91 WKRRVSNFRDGLVRIISLTAIKIVLVSWQIITQFSSVVNVQYPPAYEKFLAALDVVNLNLGSILS 285
            W+R  S  +  + + + LTA+KIV+V WQI+TQ+S V  ++YP AY+ FL+ +DVVNL+LG ILS
Sbjct:  681 WRRTCSALQARVRQTVPLTAVKIVVVVWQIVTQYSDVAGIEYPGAYQDFLSVVDVVNLDLGFILS 745          
BLAST of mRNA_F-serratus_M_contig648.17419.1 vs. uniprot
Match: A0A6H5L4F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F7_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.820e-10
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  103 VSNFRDGLVRIISLTAIKIVLVSWQIITQFSSVVNVQYPPAYEKFLAALDVVNLNLGSIL 282
            +  FR  ++R + + A+KIV+V WQI+TQF+ V NV YP  Y+ FL A+D+VN +LGS+L
Sbjct:  584 IGRFRRRVLRAVPVQALKIVVVVWQILTQFADVANVTYPSVYQDFLGAIDLVNFDLGSVL 643          
BLAST of mRNA_F-serratus_M_contig648.17419.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.210e-9
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  112 FRDGLVRIISLTAIKIVLVSWQIITQFSSVVNVQYPPAYEKFLAALDVVNLNLGSILS 285
            F   ++R + +  +KI++V WQI+TQF+ V N+ YP AY+ FL+A+DVVN +LGS L+
Sbjct:  703 FHRRILRAVPVQTLKIIVVVWQILTQFADVANITYPQAYQDFLSAIDVVNFDLGSALA 760          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig648.17419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE3.570e-1854.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8S0_ECTSI5.320e-1658.46Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5L874_9PHAE6.920e-1651.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU5_ECTSI1.340e-1549.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHA3_9PHAE1.560e-1557.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPF7_ECTSI3.620e-1451.81Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
D7FTT9_ECTSI5.000e-1348.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE1.130e-1150.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4F7_9PHAE1.820e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7J9_9PHAE2.210e-948.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig648contigF-serratus_M_contig648:461..926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue2.4e-12
Seed eggNOG ortholog2880.D7FTU5
Hectar predicted targeting categorysignal peptide
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931996.5458121-CDS-F-serratus_M_contig648:462..5611622931996.5458121-CDS-F-serratus_M_contig648:462..561Fucus serratus maleCDSF-serratus_M_contig648 463..561 -
1690964094.5033362-CDS-F-serratus_M_contig648:462..5611690964094.5033362-CDS-F-serratus_M_contig648:462..561Fucus serratus maleCDSF-serratus_M_contig648 463..561 -
1622931996.5641754-CDS-F-serratus_M_contig648:737..9261622931996.5641754-CDS-F-serratus_M_contig648:737..926Fucus serratus maleCDSF-serratus_M_contig648 738..926 -
1690964094.5176299-CDS-F-serratus_M_contig648:737..9261690964094.5176299-CDS-F-serratus_M_contig648:737..926Fucus serratus maleCDSF-serratus_M_contig648 738..926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig648.17419.1prot_F-serratus_M_contig648.17419.1Fucus serratus malepolypeptideF-serratus_M_contig648 463..926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig648.17419.1

>prot_F-serratus_M_contig648.17419.1 ID=prot_F-serratus_M_contig648.17419.1|Name=mRNA_F-serratus_M_contig648.17419.1|organism=Fucus serratus male|type=polypeptide|length=96bp
VFVVVIIVVIFGVAYLVGVVDRPISERSGMWKRRVSNFRDGLVRIISLTA
IKIVLVSWQIITQFSSVVNVQYPPAYEKFLAALDVVNLNLGSILSL
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mRNA from alignment at F-serratus_M_contig648:461..926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig648.17419.1 ID=mRNA_F-serratus_M_contig648.17419.1|Name=mRNA_F-serratus_M_contig648.17419.1|organism=Fucus serratus male|type=mRNA|length=466bp|location=Sequence derived from alignment at F-serratus_M_contig648:461..926- (Fucus serratus male)
GTGTTCGTCGTCGTAATAATCGTGGTTATCTTCGGTGTGGCCTATCTCGT TGGCGTTGTAGACCGACCAATTTCTGAGAGGAGTGGAATGTGGAAGAGGC GAGTCTCTAACTTCCGAGATGGACTGGTACGCATCATTTCCCTCACGGCG ATCAAGATCGTGTTGGTTTCCTGGCAGATCATCACGCAGGTAAATATGGT TGCGATAGATTGACGTCGTGAAACAGAGCCTTACAACACCGTCAGTTGTG GACGCAGCCTAAGGGTTGGTGTATTCTCGTGACCAACTGAGTCATTCATA TTTTTCTCAACTCACGCACCCGTGCATCGTGTGGCCGATCTCCTCTCTCT CTTTCTGCCGTGCAGTTCTCCAGCGTGGTCAACGTCCAGTACCCTCCAGC GTACGAGAAGTTTCTGGCAGCGCTCGACGTCGTCAATCTTAATTTGGGCT CCATTCTGTCGCTTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig648:461..926-

>mRNA_F-serratus_M_contig648.17419.1 ID=mRNA_F-serratus_M_contig648.17419.1|Name=mRNA_F-serratus_M_contig648.17419.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig648:461..926- (Fucus serratus male)
GTGTTCGTCGTCGTAATAATCGTGGTTATCTTCGGTGTGGCCTATCTCGT
TGGCGTTGTAGACCGACCAATTTCTGAGAGGAGTGGAATGTGGAAGAGGC
GAGTCTCTAACTTCCGAGATGGACTGGTACGCATCATTTCCCTCACGGCG
ATCAAGATCGTGTTGGTTTCCTGGCAGATCATCACGCAGGTGTTCGTCGT
CGTAATAATCGTGGTTATCTTCGGTGTGGCCTATCTCGTTGGCGTTGTAG
ACCGACCAATTTCTGAGAGGAGTGGAATGTGGAAGAGGCGAGTCTCTAAC
TTCCGAGATGGACTGGTACGCATCATTTCCCTCACGGCGATCAAGATCGT
GTTGGTTTCCTGGCAGATCATCACGCAGTTCTCCAGCGTGGTCAACGTCC
AGTACCCTCCAGCGTACGAGAAGTTTCTGGCAGCGCTCGACGTCGTCAAT
CTTAATTTGGGCTCCATTCTGTCGCTTTTCTCCAGCGTGGTCAACGTCCA
GTACCCTCCAGCGTACGAGAAGTTTCTGGCAGCGCTCGACGTCGTCAATC
TTAATTTGGGCTCCATTCTGTCGCTT
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