mRNA_F-serratus_M_contig6478.17418.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6478.17418.1
Unique NamemRNA_F-serratus_M_contig6478.17418.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6478.17418.1 vs. uniprot
Match: D7FVJ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVJ0_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.130e-30
Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 ESFEDFPVCVHWFRQISSAIVGTALGIAGVTGAPGLVGGYGLVTVMTYFYYSGYIEADEYSFGESGLKFEGMIPSFAVFLLGWVICYTGMGHDL 282
            ++FEDFPVCVHWFRQ  +A+ G  +G+AGVTG  GLVGG+  VT  TY YY+ ++EADE S+G+ GLK+EG++PS  VFLL W++ + GM H L
Sbjct:   38 DTFEDFPVCVHWFRQFMAAVAGICVGVAGVTGWFGLVGGFAFVTGATYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMDHVL 131
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BLAST of mRNA_F-serratus_M_contig6478.17418.1 vs. uniprot
Match: A0A6H5JT26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT26_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.310e-10
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:  118 YGLVTVMTYFYYSGYIEADEYSFGESGLKFEGMIPSFAVFLLGWVICYTGMGHDL 282
            +  VT  TY YY+ ++EADE S+G+ GLK+EG++PS  VFLL W++ +  MGH L
Sbjct:   17 FAFVTGATYLYYARFLEADELSYGDQGLKWEGLLPSLTVFLLMWILSFHSMGHVL 71
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BLAST of mRNA_F-serratus_M_contig6478.17418.1 vs. uniprot
Match: A0A1S3JLP3_LINUN (uncharacterized protein C20orf24 homolog n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JLP3_LINUN)

HSP 1 Score: 64.3 bits (155), Expect = 5.950e-9
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:    1 ESFEDFPVCVHWFRQISSAIVGTALGIAGVTGAPGLVGGYGLVTVMTYFYYSGYIEADEYSFG-ESGLKFEGMIPSFAVFLLGWVICYTGMGHD 279
            E+ +DF   V+W RQI   ++G   GI  + G  GL   + ++T +TYF+Y+ Y + D+  FG  S +  EG++ SFA FL+ W+I Y+ +  D
Sbjct:   36 ENKDDFLDVVYWMRQILGVVLGLIWGIVPLKGFLGLALFFAVLTGVTYFFYNTYHKVDDDKFGGPSEILKEGLMTSFASFLVLWIITYSALHFD 129
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BLAST of mRNA_F-serratus_M_contig6478.17418.1 vs. uniprot
Match: A0A196SK88_BLAHN (Uncharacterized protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SK88_BLAHN)

HSP 1 Score: 56.6 bits (135), Expect = 2.880e-6
Identity = 29/88 (32.95%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:    1 ESFEDFPVCVHWFRQISSAIVGTALGIAGVTGAPGLVGGYGLVTVMTYFYYSGYIEADEYSFGESGLKFEGMIPSFAVFLLGWVICYT 264
            E+F DF   +++ +Q  + ++G   GI   TGA GL+ G      +   Y + Y+  +   F    +  EG +P+FA+FLL W++CYT
Sbjct:   37 ETFPDFLDLIYFVKQFVALVIGIVWGILPFTGAFGLLTGVVASFGIPLLYANRYLRVNTEDFDVMTILSEGAMPTFALFLLSWILCYT 124
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BLAST of mRNA_F-serratus_M_contig6478.17418.1 vs. uniprot
Match: A0A8J1TSV9_OWEFU (Ofus.G061889 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TSV9_OWEFU)

HSP 1 Score: 55.5 bits (132), Expect = 6.970e-6
Identity = 30/95 (31.58%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:    1 ESFEDFPVCVHWFRQISSAIVGTALGIAGVTGAPGLVGGYGLVTVMTYFYYSGYIEADEYSFGESG--LKFEGMIPSFAVFLLGWVICYTGMGHD 279
            E  ++F   ++W +QI   ++G   GI  + G  GL+  + + +++ Y Y++ + + DE  +G  G  LK EG++ SFA FL+ W+I Y+ +  D
Sbjct:   33 EDKDEFLDVIYWLKQILGLLLGCVWGILPLKGFVGLLLFFAINSLIVYVYFNSFQKVDEEEYGGLGEILK-EGLMTSFATFLVTWIIFYSAIHTD 126
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BLAST of mRNA_F-serratus_M_contig6478.17418.1 vs. uniprot
Match: UPI000644B1F6 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B1F6)

HSP 1 Score: 55.1 bits (131), Expect = 8.310e-6
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   28 VHWFRQISSAIVGTALGIAGVTGAPGLVGGYGLVTVMTYFYYSGYIEADEYSFGESGLKFEGMIPSFAVFLLGWVICY 261
            VHW RQI + ++G   G+  V G  GL G + +    T  YYS ++E ++    +  L  EG +PSFA FL+ W+I Y
Sbjct:   42 VHWLRQIIAVLIGILFGLIPVKGLYGLAGFFIVNAGFTTIYYSKFLEVEDAD-TKWELFQEGFMPSFACFLVSWIISY 118
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BLAST of mRNA_F-serratus_M_contig6478.17418.1 vs. uniprot
Match: R7TBI5_CAPTE (Uncharacterized protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TBI5_CAPTE)

HSP 1 Score: 51.6 bits (122), Expect = 7.770e-5
Identity = 26/91 (28.57%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:   10 EDFPVCVHWFRQISSAIVGTALGIAGVTGAPGLVGGYGLVTVMTYFYYSGYIEADEYSFGES-GLKFEGMIPSFAVFLLGWVICYTGMGHD 279
            ++F   ++W RQI   + G   GI   +G  GL+  +    ++ Y Y + + + DE  +G    +  EG++ SFA FL+ W+I Y+ + ++
Sbjct:    6 DEFLDVIYWLRQILGLLCGIVWGIIPFSGIAGLLIFFAFNALVVYVYMNSFQKVDEEEYGGMMEILKEGLMTSFATFLVAWIILYSALHYN 96
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6478.17418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FVJ0_ECTSI1.130e-3057.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JT26_9PHAE2.310e-1050.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1S3JLP3_LINUN5.950e-937.23uncharacterized protein C20orf24 homolog n=1 Tax=L... [more]
A0A196SK88_BLAHN2.880e-632.95Uncharacterized protein n=1 Tax=Blastocystis sp. s... [more]
A0A8J1TSV9_OWEFU6.970e-631.58Ofus.G061889 protein n=1 Tax=Owenia fusiformis Tax... [more]
UPI000644B1F68.310e-638.46hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
R7TBI5_CAPTE7.770e-528.57Uncharacterized protein (Fragment) n=1 Tax=Capitel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6478contigF-serratus_M_contig6478:16636..18661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue3e-26
Seed eggNOG ortholog2880.D7FVJ0
Preferred nameC20orf24
KEGG koko:K12870
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Rab5-interacting protein (Rab5ip)
EggNOG OGsKOG3415@1,KOG3415@2759
Ec32 ortholog descriptionRab5-interacting protein family
Ec32 orthologEc-05_006040.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons3
Model size1280
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6478.17418.1prot_F-serratus_M_contig6478.17418.1Fucus serratus malepolypeptideF-serratus_M_contig6478 17651..18661 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931996.329727-UTR-F-serratus_M_contig6478:16635..168431622931996.329727-UTR-F-serratus_M_contig6478:16635..16843Fucus serratus maleUTRF-serratus_M_contig6478 16636..16843 -
1690964094.4164913-UTR-F-serratus_M_contig6478:16635..168431690964094.4164913-UTR-F-serratus_M_contig6478:16635..16843Fucus serratus maleUTRF-serratus_M_contig6478 16636..16843 -
1622931996.3402858-UTR-F-serratus_M_contig6478:16880..176501622931996.3402858-UTR-F-serratus_M_contig6478:16880..17650Fucus serratus maleUTRF-serratus_M_contig6478 16881..17650 -
1690964094.4286108-UTR-F-serratus_M_contig6478:16880..176501690964094.4286108-UTR-F-serratus_M_contig6478:16880..17650Fucus serratus maleUTRF-serratus_M_contig6478 16881..17650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931996.3547301-CDS-F-serratus_M_contig6478:17650..178371622931996.3547301-CDS-F-serratus_M_contig6478:17650..17837Fucus serratus maleCDSF-serratus_M_contig6478 17651..17837 -
1690964094.4425755-CDS-F-serratus_M_contig6478:17650..178371690964094.4425755-CDS-F-serratus_M_contig6478:17650..17837Fucus serratus maleCDSF-serratus_M_contig6478 17651..17837 -
1622931996.3669724-CDS-F-serratus_M_contig6478:18548..186611622931996.3669724-CDS-F-serratus_M_contig6478:18548..18661Fucus serratus maleCDSF-serratus_M_contig6478 18549..18661 -
1690964094.453445-CDS-F-serratus_M_contig6478:18548..186611690964094.453445-CDS-F-serratus_M_contig6478:18548..18661Fucus serratus maleCDSF-serratus_M_contig6478 18549..18661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6478.17418.1

>prot_F-serratus_M_contig6478.17418.1 ID=prot_F-serratus_M_contig6478.17418.1|Name=mRNA_F-serratus_M_contig6478.17418.1|organism=Fucus serratus male|type=polypeptide|length=100bp
ESFEDFPVCVHWFRQISSAIVGTALGIAGVTGAPGLVGGYGLVTVMTYFY
YSGYIEADEYSFGESGLKFEGMIPSFAVFLLGWVICYTGMGHDLTGPTA*
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mRNA from alignment at F-serratus_M_contig6478:16636..18661-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6478.17418.1 ID=mRNA_F-serratus_M_contig6478.17418.1|Name=mRNA_F-serratus_M_contig6478.17418.1|organism=Fucus serratus male|type=mRNA|length=2026bp|location=Sequence derived from alignment at F-serratus_M_contig6478:16636..18661- (Fucus serratus male)
GAATCGTTCGAGGACTTCCCGGTATGCGTCCACTGGTTCCGACAGATCTC
CTCGGCGATCGTGGGCACTGCTCTGGGTATCGCGGGGGTGACAGGGGCTC
CGGGACTCGTGGGGTGAGAGACGCATGGGGGAGGGGTGTTCGGCAAAAGC
TGTTGACTTTCGGGCGGCATTCTTGATATGTGTCGTATCCAAGACATGGT
CTTCACTTTCATTCAGTATTACTATGTACCTACAGTTACAGCCGAAAATT
TAAAATCAAAATGAAAAACTAGCCCTTCTGCCTGACCCAGTATGAACTAT
AGATATATATGTGTATACTGGAGCCATTTCCAATTTCTATCGCCAATTTA
TAGTGCTAATTTCTAGTGCCAATTTTTGTGCAAAATTCCTTTGACCTTGA
ACGCATTCTCGACCTCGACGGCTTGTTGACAACTGCATGATGCCAGTTAT
CTCGCATAGGGTCTATATAACAGTGTTTCACCCTCCGGATTTTTTGGTTT
GTTAGTATCTGAACTATATATCACTTACTATTGCCTCAGCCGAAGATACC
ATTTTATATGCTTTTGTATTAATTATTGCTTGATGTTTTTGCTAATTTGA
ACCCGAGGCTTGTTTTTTTTTTCTTCTCTTTTTTCTTCTTCCTTTTTTCT
CTCTCTCTCCTTTTTTTTTTTTTTTTTTTTTTCTGCACGAATTTCTAGGT
AAGAAAATGCCCCGTGTCTGTTTACAGTACTCAAAAAGTCAAAGACATTC
TCGTGCTGCTCTCTCGTGTCTCTTTGTTCCTTCCCATGTACCGACCGTAC
TGCACTGCCGGCACTGGTCTGAAGGGGATACGGTTTGGTAACGGTCATGA
CATACTTCTACTACTCGGGGTACATCGAGGCGGATGAGTATTCGTTCGGC
GAGAGTGGCCTGAAGTTCGAGGGGATGATACCATCCTTTGCCGTCTTCCT
CCTGGGGTGGGTCATCTGCTACACTGGTATGGGGCACGACCTGACTGGTC
CAACCGCATAATAGCGTGTTCCTCAGGCTACCGTGTCGTTTTGCGAAAAC
TGATGCGGCTCCGATGTTCGGGGTCTGAGCAAGACTGTCCCCGGGGCATG
GAGGCCGACTTGGTCGACCTTACGTACACACTACCGGCGGGCCTGTGTGC
ACCATGTGTAGAGGATACTTGTAGGACACGTACATCTTTTGAAGTTGTCG
TTCCCCACACGATTCACGACACGCGGTGAGATATGCCTATCTCGTCAACG
TAACATTGCTGAGCTCGTACCACACACGCAAATGCAGGGAAAACCATACG
CACCCTATGTAGGTTGCGTGGATTATGTAGGTTGGCATGATGGAAGCGAC
TACACAGAGTACTGCTGGTCTGTGCTATAATTCGGAGCAGTCTCGCCTTG
CGTGGCCTTGCGGTGGGATCGGGTCTGCTCGGTGATCGGTAAAAACGACA
TTCATCCTTCACAACCGAAAAGGCAACTATTAATGGGGCTGACCAGGAGA
ATTACTTGTTCTCGAACAGGAGTAGCTGGATGTTGGCGAAAGTTGGCTTA
ATCAAAAGTAGTAGTTATATATAGTCTAGTGTAGGTGACATTTTTTTATG
GAAATCGGTATCTTTCGTCGAATCAATCTTTTGACTACGTTGCAGCAAAG
TACCACAGTACAGTACGCTATTAATGCCAGTTCTTGGTGGGTAAGGTAAA
AATGCTATTATTATACCTGTAAAAACAACTCTAGTTTGTACTTTTGAAAA
CGACCCCTCCCCCCTTCTCCCATAAAAGTAGGCCTTTGCCTTTGCTTCAA
GCCAGATTGGCCGGAGAGCCAACATGGATGCATTCACTCGTCTCCCCGTA
TGAAGAATAAGCGCTTGCGCGCTTGTACCAGACCTCGCGAATGGACCCCT
TAAAAGAGTAGTATAGTACATGTGGAGCTCTACTGCTATACAAGTGATTG
ATTGATACCTGGCGCCATCGGAACATTACAGGAGTTTTTGAAAGAATAAT
CTGAATGCATCGAAACCTGCTGAGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6478:16636..18661-

>mRNA_F-serratus_M_contig6478.17418.1 ID=mRNA_F-serratus_M_contig6478.17418.1|Name=mRNA_F-serratus_M_contig6478.17418.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig6478:16636..18661- (Fucus serratus male)
GAATCGTTCGAGGACTTCCCGGTATGCGTCCACTGGTTCCGACAGATCTC
CTCGGCGATCGTGGGCACTGCTCTGGGTATCGCGGGGGTGACAGGGGCTC
CGGGACTCGTGGGGAATCGTTCGAGGACTTCCCGGTATGCGTCCACTGGT
TCCGACAGATCTCCTCGGCGATCGTGGGCACTGCTCTGGGTATCGCGGGG
GTGACAGGGGCTCCGGGACTCGTGGGGGGATACGGTTTGGTAACGGTCAT
GACATACTTCTACTACTCGGGGTACATCGAGGCGGATGAGTATTCGTTCG
GCGAGAGTGGCCTGAAGTTCGAGGGGATGATACCATCCTTTGCCGTCTTC
CTCCTGGGGTGGGTCATCTGCTACACTGGTATGGGGCACGACCTGACTGG
TCCAACCGCATAAGGGATACGGTTTGGTAACGGTCATGACATACTTCTAC
TACTCGGGGTACATCGAGGCGGATGAGTATTCGTTCGGCGAGAGTGGCCT
GAAGTTCGAGGGGATGATACCATCCTTTGCCGTCTTCCTCCTGGGGTGGG
TCATCTGCTACACTGGTATGGGGCACGACCTGACTGGTCCAACCGCATAA
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