mRNA_F-serratus_M_contig647.17412.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig647.17412.1
Unique NamemRNA_F-serratus_M_contig647.17412.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: V9XN14_9NOCA (Uncharacterized protein n=4 Tax=Rhodococcus TaxID=1827 RepID=V9XN14_9NOCA)

HSP 1 Score: 81.6 bits (200), Expect = 1.650e-17
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 TTPAGIEGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNIN-------GTVYILYQCGTLKPELSN-MTVQEYISVPVTRVATGTTNHIPRI 273
            T  A  + C++D+D+S  VDYFP+K+EI  A+ F++TYE SY+VL +N          Y+L +CG   PEL+  +   + I VP+TR+ TG+T H+P +
Sbjct:   31 TENAASDECITDFDAS--VDYFPDKSEIVDAENFSITYEKSYQVLTVNEPFTGAKSESYVLVKCGASAPELTGELATAQQIHVPITRLYTGSTTHLPLV 127          
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A7S3YM08_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YM08_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 1.650e-14
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   22 GCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNINGTVY------ILYQCGTLKPELSNMTVQEYISVPVTRVATGTTNHIPRIEVRFE 288
            GCV+DY+++   DYFP KA I+YA+ F +TY +SYK++++N   Y      I YQCGT  PE  N T   ++ +PV  VA  +T  IP IE+  E
Sbjct:   27 GCVTDYNNTK--DYFPHKATIEYAEYFNITYNNSYKIIDVNAGSYYGTQKIIAYQCGTPIPEWENDT-DIFVEIPVKYVAVSSTPMIPYIEILGE 118          
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A7R9U9N4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9N4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.210e-12
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   25 CVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNI----NGTVYILYQCGTLKPELSNMTVQEYISVPVTRVATGTTNHIPRIE 276
            CV+D     +VDYFP+K  + +A  F VTY +SYKV+ +    N   ++LYQCGT  P + +    +Y SVP+T+     T  +P IE
Sbjct:   12 CVADGQYDGSVDYFPDKILVDFATHFEVTYNNSYKVVEVTAPGNEQKFVLYQCGTPVPNVPD--ADKYFSVPITKSVVAVTTLLPWIE 97          
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A197JJ96_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JJ96_9FUNG)

HSP 1 Score: 68.2 bits (165), Expect = 2.800e-11
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   13 GIEGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVL-NINGTV-YILYQCGTLKPELS---NMTVQEYISVPVTRVATGTTNHIPRIEV 279
            G + CV++Y+ S NVDYFP K  +  A  F V Y ++YKV+ N  G   ++LYQCGT  P  S   N T+  ++SVPV  VA+ TT  +  IE+
Sbjct:   62 GGQNCVTNYNPSDNVDYFPSKITVDNAALFKVRYANNYKVVTNTAGKKDFVLYQCGTTPPSASQFANDTI--FVSVPVQAVASLTTTSVAYIEM 153          
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A166P882_9ACTN (Iron complex transport system substrate-binding protein n=2 Tax=Frankia sp. EI5c TaxID=683316 RepID=A0A166P882_9ACTN)

HSP 1 Score: 68.2 bits (165), Expect = 2.990e-11
Identity = 33/89 (37.08%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   25 CVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNINGTV-------YILYQCGTLKPELS-NMTVQEYISVPVTRVATGTTNHIP 267
            CV+ +D   N DYFP  + ++++Q F +TYE +Y+VL +           Y+LY+CGT KPEL+ ++     I VP+  + +G+T H+P
Sbjct:   39 CVTSFDE--NTDYFPVHSTVEHSQNFTITYEKAYQVLTVKEPYPDGKPESYVLYRCGTPKPELTGDLAGATRIEVPIRSIYSGSTTHLP 125          
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: UPI0019B58EC6 (ABC transporter substrate-binding protein n=2 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019B58EC6)

HSP 1 Score: 68.2 bits (165), Expect = 3.030e-11
Identity = 34/94 (36.17%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   19 EGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNI--------NGTVYILYQCGTLKPELSNMTVQEYISVPVTRVATGTTNHIPRIE 276
            +GCV+DYD++  VDYFP+KAE +YA    V Y ++YKV+ +            Y+L QCGT  P +++    + I VP+ R+ + +T  +P ++
Sbjct:   38 DGCVTDYDTA--VDYFPDKAEFEYATGVEVEYFNNYKVVTVLQPWPGADTSYQYVLVQCGTPAPAVTDFPNAQVIEVPIERIISMSTTFLPPLD 129          
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A844M9C0_9CYAN (ABC transporter substrate-binding protein n=2 Tax=Scytonema sp. UIC 10036 TaxID=2304196 RepID=A0A844M9C0_9CYAN)

HSP 1 Score: 67.4 bits (163), Expect = 5.760e-11
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   16 IEGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNI-----NGTV---YILYQCGTLKPELSNMTVQEYISVPVTRVATGTTNHIPRIE 276
            ++GCV +Y  + N  YFPEKA +KYA+ F V Y  +YKV+ I     N  V   Y+L QCGT  PE    T  + I +P+  + + +T H+P ++
Sbjct:   56 LQGCVQNYKPTIN--YFPEKASVKYAKGFVVEYRDNYKVITIKNPWRNADVTFQYVLVQCGTPIPEEYKET--QIIQIPINTMVSLSTTHLPHLD 146          
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: UPI0006451769 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006451769)

HSP 1 Score: 67.4 bits (163), Expect = 5.890e-11
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   10 AGIEGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLN--INGTVYILYQCGTLKPELSNMTV-QEYISVPVTRVATGTTNHIP 267
            + ++ C+ +   +A+V+YFP +  I  +  F VTY +SYKV+    +GT Y+LYQCG+ KP+ S      ++ SVPVT+V T  T + P
Sbjct:   30 SNLQECIPNGQYNASVNYFPVRTVISNSTLFNVTYTNSYKVVTDTADGTTYVLYQCGSPKPDASLFAAGAKFFSVPVTKVLTSQTPNNP 118          
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A2H2X127_9CYAN (ABC transporter, periplasmic-binding protein n=2 Tax=unclassified Calothrix TaxID=2619626 RepID=A0A2H2X127_9CYAN)

HSP 1 Score: 64.3 bits (155), Expect = 6.950e-10
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1
Query:   25 CVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNIN--------GTVYILYQCGTLKPELSNMTVQEY-ISVPVTRVATGTTNHIPRI 273
            CV  Y+++   DYFP+K  +  A+ F V Y + YKV+ IN        G  YIL QCGT  P++S+ ++  Y I+VPV  V + +T H+P +
Sbjct:   43 CVEQYEATR--DYFPDKVSVTRAKGFNVEYYNHYKVVTINNPWKGSKTGFKYILVQCGTPAPKISDASLNTYYITVPVNSVISLSTTHLPHL 132          
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Match: A0A7U3NMK3_9CYAN (ABC transporter substrate-binding protein n=1 Tax=Anabaenopsis elenkinii CCIBt3563 TaxID=2779889 RepID=A0A7U3NMK3_9CYAN)

HSP 1 Score: 62.4 bits (150), Expect = 3.300e-9
Identity = 38/95 (40.00%), Postives = 48/95 (50.53%), Query Frame = 1
Query:    7 PAGIEGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNINGT--------VYILYQCGTLKPELSNMTVQEYISVPVTRVATGTTNHIP 267
            P  I  C   YD   N+DYFP KA I YAQ F V Y  +YKV+ +            Y+L QCG   PE  N    + I+VPV  V + +T H+P
Sbjct:   31 PNLINSCGQTYDP--NLDYFPVKATINYAQGFDVEYHKAYKVVTVKSPWRDANRDFKYVLVQCGAPVPE--NFRETQVITVPVDSVVSLSTTHLP 121          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig647.17412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
V9XN14_9NOCA1.650e-1741.41Uncharacterized protein n=4 Tax=Rhodococcus TaxID=... [more]
A0A7S3YM08_HETAK1.650e-1444.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9U9N4_9STRA5.210e-1239.77Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A197JJ96_9FUNG2.800e-1143.62Uncharacterized protein n=1 Tax=Linnemannia elonga... [more]
A0A166P882_9ACTN2.990e-1137.08Iron complex transport system substrate-binding pr... [more]
UPI0019B58EC63.030e-1136.17ABC transporter substrate-binding protein n=2 Tax=... [more]
A0A844M9C0_9CYAN5.760e-1138.95ABC transporter substrate-binding protein n=2 Tax=... [more]
UPI00064517695.890e-1139.33hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2H2X127_9CYAN6.950e-1039.13ABC transporter, periplasmic-binding protein n=2 T... [more]
A0A7U3NMK3_9CYAN3.300e-940.00ABC transporter substrate-binding protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig647contigF-serratus_M_contig647:29022..29324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.4
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog1435356.Y013_10370
KEGG koko:K02016
KEGG TC3.A.1.14
KEGG Pathwayko02010,map02010
KEGG ModuleM00240
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ABC-type Fe3 -hydroxamate transport system, periplasmic
EggNOG OGs2IAFC@201174,4G7D6@85025,COG0614@1,COG0614@2
COG Functional cat.P
Best tax levelNocardiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931995.3035452-CDS-F-serratus_M_contig647:29021..293241622931995.3035452-CDS-F-serratus_M_contig647:29021..29324Fucus serratus maleCDSF-serratus_M_contig647 29022..29324 +
1690964093.9334004-CDS-F-serratus_M_contig647:29021..293241690964093.9334004-CDS-F-serratus_M_contig647:29021..29324Fucus serratus maleCDSF-serratus_M_contig647 29022..29324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig647.17412.1prot_F-serratus_M_contig647.17412.1Fucus serratus malepolypeptideF-serratus_M_contig647 29022..29324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig647.17412.1

>prot_F-serratus_M_contig647.17412.1 ID=prot_F-serratus_M_contig647.17412.1|Name=mRNA_F-serratus_M_contig647.17412.1|organism=Fucus serratus male|type=polypeptide|length=101bp
TTPAGIEGCVSDYDSSANVDYFPEKAEIKYAQTFAVTYESSYKVLNINGT
VYILYQCGTLKPELSNMTVQEYISVPVTRVATGTTNHIPRIEVRFEFICC
*
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mRNA from alignment at F-serratus_M_contig647:29022..29324+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig647.17412.1 ID=mRNA_F-serratus_M_contig647.17412.1|Name=mRNA_F-serratus_M_contig647.17412.1|organism=Fucus serratus male|type=mRNA|length=303bp|location=Sequence derived from alignment at F-serratus_M_contig647:29022..29324+ (Fucus serratus male)
ACAACGCCAGCAGGAATCGAGGGTTGCGTGTCTGATTATGATTCCTCGGC CAACGTTGACTACTTTCCAGAGAAGGCCGAAATCAAGTACGCTCAGACAT TCGCTGTCACGTACGAGTCTTCCTACAAGGTCCTGAACATCAATGGGACT GTCTATATCTTGTATCAGTGCGGCACTCTCAAGCCCGAGCTGTCAAACAT GACCGTGCAGGAGTACATCAGTGTGCCCGTGACCAGGGTTGCAACCGGGA CTACTAACCACATCCCCAGGATAGAGGTACGATTCGAGTTCATTTGCTGT TAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig647:29022..29324+

>mRNA_F-serratus_M_contig647.17412.1 ID=mRNA_F-serratus_M_contig647.17412.1|Name=mRNA_F-serratus_M_contig647.17412.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig647:29022..29324+ (Fucus serratus male)
ACAACGCCAGCAGGAATCGAGGGTTGCGTGTCTGATTATGATTCCTCGGC
CAACGTTGACTACTTTCCAGAGAAGGCCGAAATCAAGTACGCTCAGACAT
TCGCTGTCACGTACGAGTCTTCCTACAAGGTCCTGAACATCAATGGGACT
GTCTATATCTTGTATCAGTGCGGCACTCTCAAGCCCGAGCTGTCAAACAT
GACCGTGCAGGAGTACATCAGTGTGCCCGTGACCAGGGTTGCAACCGGGA
CTACTAACCACATCCCCAGGATAGAGGTACGATTCGAGTTCATTTGCTGT
TAGACAACGCCAGCAGGAATCGAGGGTTGCGTGTCTGATTATGATTCCTC
GGCCAACGTTGACTACTTTCCAGAGAAGGCCGAAATCAAGTACGCTCAGA
CATTCGCTGTCACGTACGAGTCTTCCTACAAGGTCCTGAACATCAATGGG
ACTGTCTATATCTTGTATCAGTGCGGCACTCTCAAGCCCGAGCTGTCAAA
CATGACCGTGCAGGAGTACATCAGTGTGCCCGTGACCAGGGTTGCAACCG
GGACTACTAACCACATCCCCAGGATAGAGGTACGATTCGAGTTCATTTGC
TGTTAG
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