mRNA_F-serratus_M_contig6462.17405.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6462.17405.1
Unique NamemRNA_F-serratus_M_contig6462.17405.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6462.17405.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 7.880e-28
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 SDSVRVDVNQEDNEATVEAVEEGSATLTSKWVRGPVKSGRVYRYSISSRRKPFVDLLVATRKIKSGGEAHTTDFTAIYQAMVGEPVKCPICM 276
            SD++RV VN EDNEAT+E + E SATL  +W  G VK+G VYR+S S+RRKP+VDLLVA+ K K   E     F+AIY+AM GEPV CPICM
Sbjct:  955 SDTIRVGVNSEDNEATIEDIGERSATLACEWSEGAVKAGSVYRFSTSTRRKPYVDLLVASDKAKKDTEVQVAGFSAIYKAMAGEPVSCPICM 1046
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6462.17405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2K8_ECTSI7.880e-2860.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6462contigF-serratus_M_contig6462:25203..27365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog2880.D7G2K8
KEGG koko:K15710,ko:K15711
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
EggNOG OGsCOG0141@1,COG0553@1,KOG1001@2759,KOG1002@2759
EC2.3.2.27
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Exons3
Model size279
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6462.17405.1prot_F-serratus_M_contig6462.17405.1Fucus serratus malepolypeptideF-serratus_M_contig6462 25203..27363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931994.2137632-CDS-F-serratus_M_contig6462:25202..252561622931994.2137632-CDS-F-serratus_M_contig6462:25202..25256Fucus serratus maleCDSF-serratus_M_contig6462 25203..25256 +
1690964093.403-CDS-F-serratus_M_contig6462:25202..252561690964093.403-CDS-F-serratus_M_contig6462:25202..25256Fucus serratus maleCDSF-serratus_M_contig6462 25203..25256 +
1622931994.2493734-CDS-F-serratus_M_contig6462:25667..258391622931994.2493734-CDS-F-serratus_M_contig6462:25667..25839Fucus serratus maleCDSF-serratus_M_contig6462 25668..25839 +
1690964093.4153206-CDS-F-serratus_M_contig6462:25667..258391690964093.4153206-CDS-F-serratus_M_contig6462:25667..25839Fucus serratus maleCDSF-serratus_M_contig6462 25668..25839 +
1622931994.2657506-CDS-F-serratus_M_contig6462:27313..273631622931994.2657506-CDS-F-serratus_M_contig6462:27313..27363Fucus serratus maleCDSF-serratus_M_contig6462 27314..27363 +
1690964093.4239712-CDS-F-serratus_M_contig6462:27313..273631690964093.4239712-CDS-F-serratus_M_contig6462:27313..27363Fucus serratus maleCDSF-serratus_M_contig6462 27314..27363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6462.17405.1

>prot_F-serratus_M_contig6462.17405.1 ID=prot_F-serratus_M_contig6462.17405.1|Name=mRNA_F-serratus_M_contig6462.17405.1|organism=Fucus serratus male|type=polypeptide|length=92bp
SDSVRVDVNQEDNEATVEAVEEGSATLTSKWVRGPVKSGRVYRYSISSRR
KPFVDLLVATRKIKSGGEAHTTDFTAIYQAMVGEPVKCPICM
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mRNA from alignment at F-serratus_M_contig6462:25203..27365+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6462.17405.1 ID=mRNA_F-serratus_M_contig6462.17405.1|Name=mRNA_F-serratus_M_contig6462.17405.1|organism=Fucus serratus male|type=mRNA|length=2163bp|location=Sequence derived from alignment at F-serratus_M_contig6462:25203..27365+ (Fucus serratus male)
TCGGACAGCGTAAGGGTGGACGTAAACCAGGAAGATAATGAGGCCACGGT
GGAGGTGAGAATGAAAGGGAAACAAAACGGCGAAGGGGGCTGCTACGGTG
TTTAGTATCATCAATTTACACCAGCGACAAGTGTGGTGCTTATGGTATTT
CGTGTACTTAAGTGTGTATTATGTGCGTACGATTAAATTGCACATAACCG
CGCAATCTGGCCCTGTCGTGCCAAAGTAGTAATATTAATAGTCAATCTTA
AGCTATATTAAAATACTAATATTAATAGTCGCAATCGCTACAACCCCCAA
AGGGGCACCAATGACTGGTTTTTGCCGTGAAAACCTCTGGCGAGACGCGA
CACTAAAGCCACACCACACACTCTCTCTCTCTCTCCTGCCTCTCTCTAAC
CCTCCAGCACCCTCTGTTCCTCTCTCCGCCCCCTGATTCCATCGGCACCT
CGGATGGACGAACAGGCCGTGGAGGAGGGATCGGCGACGTTAACGTCGAA
GTGGGTGCGCGGACCTGTGAAGAGCGGTCGGGTCTACCGCTACTCCATTT
CATCGCGCCGGAAGCCCTTCGTGGATCTTCTCGTTGCGACACGCAAGATC
AAGAGCGGAGGGGAAGCCCACACCACTGACTTCACCGGTGAGTGTCTTGA
CAGTTTCCCATCCAATTGTCATTGGAGGATTTTTCCAATACAGGGTCAAA
GCCGGTTTTCAGTTTGACGTAGAGCAATCAATGTAATTGTCAAGTATAAT
GGAGTGCGTCTCCCTGACATGTTAATGTTGGCCCAAGCCCCTATTTGCGT
ATGGGTGGGGGCACTATTATCGTATATTATTACTATGATATTCAGACCAT
CTCAATTATGTACTACAGTAGTGTCTTTTGTTGTGTTATGTCTGATGGAT
GATGATCTAGATGGCGATTAATACCATGTACAGTAGTGGCCTTGAGTACT
GTACTGTATTGTACTGTTTGCACACTAATAGAAAACGTGTTTTGGTTATA
CTTGTAATGATAGGTCTCTCCCCGACGATTTACGGTTGCCCTATGTTTTG
CCATGTTTGAAGGCTTTGCATAGCAATTAATATAAGTGTACAGTATAACG
ATGGGCTTCTCCCCGATATTATACTGTTGACCCATGGTTACTACCATCGG
GGAACCCGTTTTTAGTGTTTTCGTCCTTACAGCCTAGGTAACAGCAGTGT
AATATCACTACCATATTTGATAGATGTACTACATTGTTTTTGTTTTTTGC
AGTTTTTCTGGTGTCCCTGCATGGCGATTAATGTAAGTGTACAGTATAAC
GGTGGGCTTCTCCCCGACATTACACTATTGATCCAATGTTACTACCATAG
GGGAACCCATTTGAATGCCATGAAGAGGTTTTGTATTTGCAGCCTTTGAT
ACCACCTAAACGTTTTGAGATTTTTTCTCCTGACTGGAGGATGCTATTAA
CAGAAGGTATATAGGCGCGTTCTGGTTTTTCTTTAAACAATTGATCTGTA
GCTCTAGAGCTATACAGTTCTATCTCGAACTAATGATATCACCACGAGCT
TGACGGGTCCCAACAGTATCACCACAACCGTTGCTCCCTCTCACACACTA
ATTAATAATAATAATATCAGGGACGGTACCAAACACGCGTTTCTGCTGCG
GTACTGTCCCATGTAATATACTTGTATGGTATCTAGTTGTGGCTCGTCAG
GTACTGTACCATTAACCCATAACATAGAATAGTTAACCAGCAGGCGTATG
TCATACGTCTTGCTCTATCGATAGTGCTACTGTACCTTGAACCATTTCCG
GGGTGTTTTGTTTCTTTTCATGCCACGGACCGACCGAGGACTCCTGTCGG
GGTTTCGGTACCATAACAGGAGGTAGCGTTCGCTTCGTTGCCTTATGTTC
AATCATTTTTGTTGTTGTGGTGCTGGTGGTGCTGCTCCGCCGCCTCGTAG
GTGTTCCACACGTCAGTGGCGTTCCTTCGCTATCACATATCTCTGTATAT
ATCTCTCTCTCTTTCCCATTCATCCTCGTGTGTGGTTGGTTCCCTTCCGT
GTTGGCGCCGTGTGCTCCCTCGCCGCTATTTTTCTTTCTTCGCCCGTGGT
GGAACCTAAAGCCATTTACCAGGCTATGGTTGGAGAGCCCGTCAAGTGCC
CCATCTGCATGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6462:25203..27365+

>mRNA_F-serratus_M_contig6462.17405.1 ID=mRNA_F-serratus_M_contig6462.17405.1|Name=mRNA_F-serratus_M_contig6462.17405.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig6462:25203..27365+ (Fucus serratus male)
TCGGACAGCGTAAGGGTGGACGTAAACCAGGAAGATAATGAGGCCACGGT
GGAGTCGGACAGCGTAAGGGTGGACGTAAACCAGGAAGATAATGAGGCCA
CGGTGGAGGCCGTGGAGGAGGGATCGGCGACGTTAACGTCGAAGTGGGTG
CGCGGACCTGTGAAGAGCGGTCGGGTCTACCGCTACTCCATTTCATCGCG
CCGGAAGCCCTTCGTGGATCTTCTCGTTGCGACACGCAAGATCAAGAGCG
GAGGGGAAGCCCACACCACTGACTTCACCGGCCGTGGAGGAGGGATCGGC
GACGTTAACGTCGAAGTGGGTGCGCGGACCTGTGAAGAGCGGTCGGGTCT
ACCGCTACTCCATTTCATCGCGCCGGAAGCCCTTCGTGGATCTTCTCGTT
GCGACACGCAAGATCAAGAGCGGAGGGGAAGCCCACACCACTGACTTCAC
CGCCATTTACCAGGCTATGGTTGGAGAGCCCGTCAAGTGCCCCATCTGCA
TGCCATTTACCAGGCTATGGTTGGAGAGCCCGTCAAGTGCCCCATCTGCA
TG
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