mRNA_F-serratus_M_contig6462.17404.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6462.17404.1
Unique NamemRNA_F-serratus_M_contig6462.17404.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6462.17404.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.950e-20
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 MLRRILGAWCKSPNERVLSYKDALQRTECESIETTVRTRRLLWVGALLRMGDHSLPKRVMSGELENAGKRGPGGKEKEWTDCVADDVRIFG 273
            +L R++G   K    R LSY   L+R ECES+E T+R RRLL+ GAL R  D  LPKR+M GEL    KR  GG+E+ W  CV DD++ FG
Sbjct:  160 LLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250          
BLAST of mRNA_F-serratus_M_contig6462.17404.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.430e-20
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 MLRRILGAWCKSPNERVLSYKDALQRTECESIETTVRTRRLLWVGALLRMGDHSLPKRVMSGELENAGKRGPGGKEKEWTDCVADDVRIFG 273
            +L R++G   K    R LSY   L+R EC+S+E T+R RRLL+ G+L R  D  LPKR+M GEL    KR  GG+E+ W  CV DD++ FG
Sbjct:   28 LLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 118          
BLAST of mRNA_F-serratus_M_contig6462.17404.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.610e-19
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 MLRRILGAWCKSPNERVLSYKDALQRTECESIETTVRTRRLLWVGALLRMGDHSLPKRVMSGELENAGKRGPGGKEKEWTDCVADDVRIFG 273
            +L R++G   K    R LSY   L+R EC+S+E T+R RRLL+ GAL R  D  LPKR+M GEL    KR  GG+E+ W  CV DD++ FG
Sbjct:  184 LLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 274          
BLAST of mRNA_F-serratus_M_contig6462.17404.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.710e-19
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 MLRRILGAWCKSPNERVLSYKDALQRTECESIETTVRTRRLLWVGALLRMGDHSLPKRVMSGELENAGKRGPGGKEKEWTDCVADDVRIFG 273
            +L R++G   K    R LSY   L+R EC+S+E T+R RRLL+ GAL R  D  LPKR+M GEL    KR  GG+E+ W  CV DD++ FG
Sbjct:  423 LLFRVIGYKLKKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 513          
BLAST of mRNA_F-serratus_M_contig6462.17404.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.360e-18
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    1 MLRRILGAWCKSPNERVLSYKDALQRTECESIETTVRTRRLLWVGALLRMGDHSLPKRVMSGELENAGKRGPGGKEKEWTDCVADDVRIFG 273
            +L R++G   K    R LSY   L+R EC+S+E T+R RRLL+ GAL R  D  LPKR+M GEL    KR  GG+E+ W  CV DD+  FG
Sbjct:  512 LLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFG 602          
BLAST of mRNA_F-serratus_M_contig6462.17404.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 84.0 bits (206), Expect = 6.580e-18
Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    1 MLRRILGAWCKSPNERV-LSYKDALQRTECESIETTVRTRRLLWVGALLRMGDHSLPKRVMSGELENAGKRGPGGKEKEWTDCVADDVRIF----GITGD-----------WSTAALDHGVWYSTVRE 336
            +L R++G   +   +   LSY  AL+ T CESIETT+R RRL + GA++R  +  LP R+M G +   G   PGG+ K W   +A+D+R+F    G T D           W TAA   G WY  + E
Sbjct:   34 VLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKATEGSTEDSPLVFGVGTALWPTAAKQTGKWYRGILE 161          
BLAST of mRNA_F-serratus_M_contig6462.17404.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.230e-17
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 MLRRILGAWCKSPNERVLSYKDALQRTECESIETTVRTRRLLWVGALLRMGDHSLPKRVMSGELENAGKRGPGGKEKEWTDCVADDVRIFG 273
            +L R++G   K    R LSY  A +R EC+S+E T+R RRLL   AL R  D  LPKR+M GEL    KR  GG+++ W  CV DD++ FG
Sbjct:  140 LLLRVIGYKRKKDTYRQLSYAQAPKRVECQSVEATIRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQNWPKCVLDDLKAFG 230          
BLAST of mRNA_F-serratus_M_contig6462.17404.1 vs. uniprot
Match: A0A6H5JTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 5.760e-17
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 MLRRILGAWCKSPNERVLSYKDALQRTECESIETTVRTRRLLWVGALLRMGDHSLPKRVMSGELENAGKRGPGGKEKEWTDCVADDVRIFG 273
            +L R++G        R  SY   L+R EC+S+E T+R RRLL+ GA+ R  D  LPKR++ GEL    KR   G+E+ W  CV DD++ FG
Sbjct:  141 LLHRVIGYERMKDTYRQFSYAQTLKRVECQSVEATIRQRRLLFAGAMARQPDGRLPKRLVLGELAGGEKRRSAGQEQNWPKCVLDDLKAFG 231          
BLAST of mRNA_F-serratus_M_contig6462.17404.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.640e-16
Identity = 52/129 (40.31%), Postives = 71/129 (55.04%), Query Frame = 1
Query:    1 MLRRILGAWCKSPNERVLSYKDALQRTECESIETTVRTRRLLWVGALLRMGDHSLPKRVMSGELENAGKRGPGGKEKEWTDCVADDVRIF----GITGD-----------WSTAA-LDHGV-WYSTVRE 336
            +L R++G   K    R LSY  AL+R  C+S+E TVR RRLL+ GA+ R  D  LPKR+M GEL      G G  E+ W  C+ DD+++F    G T D           WS AA ++ GV W++ V +
Sbjct:  158 LLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQ 286          
BLAST of mRNA_F-serratus_M_contig6462.17404.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.670e-16
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 1
Query:    1 MLRRILGAWCKSPNERVLSYKDALQRTECESIETTVRTRRLLWVGALLRMGDHSLPKRVMSGELENAGKRGPGGKEKEWTDCVADDVRIFG---ITGDW 288
            +L R++G   K    R LSY  AL+R  C+S+E TVR RRLL+ GA+ R  D  LPKR+M GEL      G G  E+ W  C+ DD+++F    + G W
Sbjct:  190 LLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARELRGSW 288          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6462.17404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAH7_9PHAE1.950e-2050.55Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JYE2_9PHAE3.430e-2048.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1X4_9PHAE3.610e-1949.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLT1_9PHAE3.710e-1949.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KS82_9PHAE1.360e-1849.45Reverse transcriptase domain-containing protein (F... [more]
UPI001AA1A1FE6.580e-1838.28hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5K2V4_9PHAE4.230e-1747.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTZ8_9PHAE5.760e-1743.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE2.640e-1640.31Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLX9_9PHAE2.670e-1643.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6462contigF-serratus_M_contig6462:8373..8708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score64.3
Seed ortholog evalue4.1e-08
Seed eggNOG ortholog6500.XP_005092354.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931994.1273382-CDS-F-serratus_M_contig6462:8372..87081622931994.1273382-CDS-F-serratus_M_contig6462:8372..8708Fucus serratus maleCDSF-serratus_M_contig6462 8373..8708 -
1690964093.3814766-CDS-F-serratus_M_contig6462:8372..87081690964093.3814766-CDS-F-serratus_M_contig6462:8372..8708Fucus serratus maleCDSF-serratus_M_contig6462 8373..8708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6462.17404.1prot_F-serratus_M_contig6462.17404.1Fucus serratus malepolypeptideF-serratus_M_contig6462 8373..8708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6462.17404.1

>prot_F-serratus_M_contig6462.17404.1 ID=prot_F-serratus_M_contig6462.17404.1|Name=mRNA_F-serratus_M_contig6462.17404.1|organism=Fucus serratus male|type=polypeptide|length=112bp
MLRRILGAWCKSPNERVLSYKDALQRTECESIETTVRTRRLLWVGALLRM
GDHSLPKRVMSGELENAGKRGPGGKEKEWTDCVADDVRIFGITGDWSTAA
LDHGVWYSTVRE
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mRNA from alignment at F-serratus_M_contig6462:8373..8708-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6462.17404.1 ID=mRNA_F-serratus_M_contig6462.17404.1|Name=mRNA_F-serratus_M_contig6462.17404.1|organism=Fucus serratus male|type=mRNA|length=336bp|location=Sequence derived from alignment at F-serratus_M_contig6462:8373..8708- (Fucus serratus male)
ATGTTGCGTCGGATCCTAGGAGCCTGGTGCAAGTCGCCGAACGAGCGCGT TCTCTCCTACAAAGACGCCCTTCAGCGAACCGAATGCGAAAGCATCGAGA CAACCGTGCGCACGAGGAGGTTGTTGTGGGTGGGGGCGCTGCTCCGCATG GGTGACCACAGCCTACCCAAGAGGGTCATGTCGGGAGAGCTCGAGAACGC GGGCAAACGTGGACCGGGGGGAAAGGAGAAAGAGTGGACGGACTGCGTGG CAGATGATGTTCGTATTTTTGGCATCACGGGGGACTGGAGCACCGCCGCA CTTGACCATGGGGTTTGGTACAGCACGGTACGTGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6462:8373..8708-

>mRNA_F-serratus_M_contig6462.17404.1 ID=mRNA_F-serratus_M_contig6462.17404.1|Name=mRNA_F-serratus_M_contig6462.17404.1|organism=Fucus serratus male|type=CDS|length=672bp|location=Sequence derived from alignment at F-serratus_M_contig6462:8373..8708- (Fucus serratus male)
ATGTTGCGTCGGATCCTAGGAGCCTGGTGCAAGTCGCCGAACGAGCGCGT
TCTCTCCTACAAAGACGCCCTTCAGCGAACCGAATGCGAAAGCATCGAGA
CAACCGTGCGCACGAGGAGGTTGTTGTGGGTGGGGGCGCTGCTCCGCATG
GGTGACCACAGCCTACCCAAGAGGGTCATGTCGGGAGAGCTCGAGAACGC
GGGCAAACGTGGACCGGGGGGAAAGGAGAAAGAGTGGACGGACTGCGTGG
CAGATGATGTTCGTATTTTTGGCATCACGGGGGACTGGAGCACCGCCGCA
CTTGACCATGGGGTTTGGTACAGCACGGTACGTGAAATGTTGCGTCGGAT
CCTAGGAGCCTGGTGCAAGTCGCCGAACGAGCGCGTTCTCTCCTACAAAG
ACGCCCTTCAGCGAACCGAATGCGAAAGCATCGAGACAACCGTGCGCACG
AGGAGGTTGTTGTGGGTGGGGGCGCTGCTCCGCATGGGTGACCACAGCCT
ACCCAAGAGGGTCATGTCGGGAGAGCTCGAGAACGCGGGCAAACGTGGAC
CGGGGGGAAAGGAGAAAGAGTGGACGGACTGCGTGGCAGATGATGTTCGT
ATTTTTGGCATCACGGGGGACTGGAGCACCGCCGCACTTGACCATGGGGT
TTGGTACAGCACGGTACGTGAA
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