mRNA_F-serratus_M_contig646.17402.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig646.17402.1
Unique NamemRNA_F-serratus_M_contig646.17402.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig646.17402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig646contigF-serratus_M_contig646:293478..294943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size129
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig646.17402.1prot_F-serratus_M_contig646.17402.1Fucus serratus malepolypeptideF-serratus_M_contig646 293509..294943 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931993.4337218-UTR-F-serratus_M_contig646:293477..2935081622931993.4337218-UTR-F-serratus_M_contig646:293477..293508Fucus serratus maleUTRF-serratus_M_contig646 293478..293508 -
1690964093.0881238-UTR-F-serratus_M_contig646:293477..2935081690964093.0881238-UTR-F-serratus_M_contig646:293477..293508Fucus serratus maleUTRF-serratus_M_contig646 293478..293508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931993.4717875-CDS-F-serratus_M_contig646:293508..2935611622931993.4717875-CDS-F-serratus_M_contig646:293508..293561Fucus serratus maleCDSF-serratus_M_contig646 293509..293561 -
1690964093.0975897-CDS-F-serratus_M_contig646:293508..2935611690964093.0975897-CDS-F-serratus_M_contig646:293508..293561Fucus serratus maleCDSF-serratus_M_contig646 293509..293561 -
1622931993.4899116-CDS-F-serratus_M_contig646:294867..2949431622931993.4899116-CDS-F-serratus_M_contig646:294867..294943Fucus serratus maleCDSF-serratus_M_contig646 294868..294943 -
1690964093.1063766-CDS-F-serratus_M_contig646:294867..2949431690964093.1063766-CDS-F-serratus_M_contig646:294867..294943Fucus serratus maleCDSF-serratus_M_contig646 294868..294943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig646.17402.1

>prot_F-serratus_M_contig646.17402.1 ID=prot_F-serratus_M_contig646.17402.1|Name=mRNA_F-serratus_M_contig646.17402.1|organism=Fucus serratus male|type=polypeptide|length=43bp
SAGVRRYIFIAGNRALELEQTPKIHCDQSNFLTSWCERRSEP*
back to top

mRNA from alignment at F-serratus_M_contig646:293478..294943-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig646.17402.1 ID=mRNA_F-serratus_M_contig646.17402.1|Name=mRNA_F-serratus_M_contig646.17402.1|organism=Fucus serratus male|type=mRNA|length=1466bp|location=Sequence derived from alignment at F-serratus_M_contig646:293478..294943- (Fucus serratus male)
TCCGCTGGAGTAAGGAGATACATTTTTATAGCTGGGAACCGGGCGCTGGA
ACTGGAGCAGACGCCAAAAATACACTGTGAGTCATGGAGAACATAACACT
CTTTGAATATATGATGAAGATGGGGTGCACTCAATCGGAAATAAGTTACG
CACTCCGTCACGCATTGATGATGAAAGACTACTCCAAAGATGCAGTGGAT
GACGTCCTTTATGAGTCATCGGATGAGGGCAGAAAGCGTAGGGAGACGCA
GATGGACGCCATTGAGGCCGCTAACGCACGTCGCTTGAAGGAGATGGTAT
TTGTTTTGACGAAAGTAGAGGTGGATGCTTGGCGAAGGATGACTGGTTCC
GATCGCGCCGAAGTGTTGGGACGGGACGGCCGACCCTTGACGCCTGAGGA
ATACACTACTTTTTTGAAGGATGAGGTGGACGAGTTGAGAGATGCTATCT
TTCTATCTGAACGAGAACGGGGCCTCAAGAGGATAGACAGATTTATGCGA
GAGTTCATACGGGGTCGAGTAATAATGCAGCTCACCGACGACGAATACGA
CGCGATCCAACTGCTCAGGCGAGCCCACAGAACGCCACAGACTAATACGC
CGTCAGATTCGCATGCTACCGTTTCACCAGCGAGCACCGTACAGCAATGT
CTCGATTCGCCGTCAGACTCGTCCACTGTCTTGAAAGAACGAGTCGAGCC
AAACCTCGTCGCGACCGAACAGCAGTGTCTCGATTTACCGCCAGAACCGC
ATGCTGCCCCGGAACGAATCGAGCCAGCTCCCGTCGCGACCGAACAGCAG
TGTCTCGATGCACCGTCAGACCAATGTATTACTTTGGAGGAAGAAGGAAC
ATGCACGAATCAGGGGGAAGATTTTATTTCACCAGCGAGCACCGTACAGC
AATGTCTCGATTTACCGCCAGAATCGCACGCTGCCTTGGAGCGAATCGAG
CCAGCTCCCGTCGCGACCGAACAGCAGTGTCTCGACCCGCCGTCAGACCC
ATGTGTTATTTTGGGGGGACTGGCAAATGTAAGTGGGAGCCCATGCTTGG
ATGAGGGGGAAAATTTTATTTTACAAAACGAGGACACAACGGTGGAGAGC
GAGAATTCGGGGGAAAACTGGGTTCTAGCGAACATCACGCAAGACGCAAC
TACAGCAGTACGCGTCGCCACTCGCGTGGCGGTTGCGACTGACCAGCGTC
GGCAAGGAACGATGACCACCGATGAGAACAAACAGTTCGATCGGGGACGG
AAGAAGGAGAGGCTGTTCGTTTCCCAGTTGGGAGCGGCCGTGCCTGGCCT
ACCTTGTTTTTGTGTTTTCCTGTTGCCTGTGTTTTCCTGCTCTGTCTGTA
TTTTTGCACAAATTCTTATTTCCCCCACCCAGGTGATCAATCAAATTTTC
TGACTAGCTGGTGCGAGCGGCGGTCCGAGCCCTGAGCCCCAACCTTATGA
AGATCGCGACGTCACT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig646:293478..294943-

>mRNA_F-serratus_M_contig646.17402.1 ID=mRNA_F-serratus_M_contig646.17402.1|Name=mRNA_F-serratus_M_contig646.17402.1|organism=Fucus serratus male|type=CDS|length=258bp|location=Sequence derived from alignment at F-serratus_M_contig646:293478..294943- (Fucus serratus male)
TCCGCTGGAGTAAGGAGATACATTTTTATAGCTGGGAACCGGGCGCTGGA
ACTGGAGCAGACGCCAAAAATACACTTCCGCTGGAGTAAGGAGATACATT
TTTATAGCTGGGAACCGGGCGCTGGAACTGGAGCAGACGCCAAAAATACA
CTGTGATCAATCAAATTTTCTGACTAGCTGGTGCGAGCGGCGGTCCGAGC
CCTGAGTGATCAATCAAATTTTCTGACTAGCTGGTGCGAGCGGCGGTCCG
AGCCCTGA
back to top