mRNA_F-serratus_M_contig646.17400.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6P275_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P275_9ASTR) HSP 1 Score: 141 bits (355), Expect = 1.020e-33 Identity = 77/176 (43.75%), Postives = 109/176 (61.93%), Query Frame = 1
Query: 28 EPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELIAKGSK 546
EP T +A SSE PQW+ A+K E+D + W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y +S SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+Y+E P+G+ +P Q G+ L K++YGL A W +KF ++ G K
Sbjct: 284 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDSYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 458
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5R9QKQ6_9BACT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Labilibacter sediminis TaxID=2570926 RepID=A0A5R9QKQ6_9BACT) HSP 1 Score: 138 bits (347), Expect = 1.520e-33 Identity = 74/176 (42.05%), Postives = 110/176 (62.50%), Query Frame = 1
Query: 25 DEPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDS--PNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGSK 546
+EP T EA SSE PQW+ A+K E++ + W++VD P G LG + IFKRK+ DG ++KYK R V KG+RQ +G+ Y ++ SP +SIRM LA+ A + + Q+DV+ AFL ++ EE+Y+E P+G+ S N+V +L K++YGL A W +KF ++ G K
Sbjct: 28 NEPKTYQEAVNSSEGPQWKEAIKSEIESILQNHTWELVDLPPGSKPLGYRWIFKRKMKADGSIDKYKARLVVKGYRQKEGLDYFDTYSPVTRITSIRMVLAIAAIRNLQIHQMDVKTAFLNGELEEEIYMEQPEGFVASGYENKVCKLVKSLYGLKQAPKQWHQKFDQAMMESGFK 203
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR) HSP 1 Score: 142 bits (358), Expect = 2.790e-33 Identity = 79/186 (42.47%), Postives = 115/186 (61.83%), Query Frame = 1
Query: 1 TGLASYLPD-EPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELIAKGSK 546
T +Y+ + EP T EA SSE PQW+ A+K E+D + +W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+Y+E P+G+ +P Q G+ L K++YGL A W +KF ++ G K
Sbjct: 281 TDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 465
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE) HSP 1 Score: 137 bits (346), Expect = 3.410e-33 Identity = 99/332 (29.82%), Postives = 146/332 (43.98%), Query Frame = 3
Query: 537 GFERSQADPCVFR----------------------RKHLGKVVQDEHRAMEDLRSSFPIKDLGEISYYLGCHITRDRKARTVTFDQQRYVQTVTERFGIRKTSVIPA-PTGKASLLRADGPKNDAEIAEMHG-------------------------------------------------IPYRE--------------------------------AVGALI-WFSRAQRITATATSESEYVALAEIVNELRFLRQVKAFMVPPIDTN-IRVHEDNEGAIKMAENSFSSRRTRHIDVKHHMVRDAVDGGIVRVEYVKSRKQHADVLTKAI 1214
GFE+S +DPCV R K L +V+ +E L S P K+LGE+ ++LGC I+RDR+A T+ Q+ Y++ V ERF I +TS IPA P + + D D E+ G + Y++ VG L+ WFS Q+ + +TSE+EY+A+ + V E F+ + F+ P I V EDNEGAI +AEN SS R++HIDV+HH +R+ + G++ V +V S++QHAD+LTKA+
Sbjct: 43 GFEQSLSDPCVLRFMMGDEVMGIFAIHVDDILYAGTKRLAEVI------VEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 368
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6PND6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PND6_9ASTR) HSP 1 Score: 137 bits (344), Expect = 3.540e-33 Identity = 75/176 (42.61%), Postives = 108/176 (61.36%), Query Frame = 1
Query: 28 EPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELIAKGSK 546
EP T +A SSE PQW+ A+K E+D + W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+ +E P+G+ +P Q G+ L K++YGL A W +KF ++ G K
Sbjct: 70 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEILMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 244
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6MBP8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MBP8_9ASTR) HSP 1 Score: 140 bits (354), Expect = 6.080e-33 Identity = 77/176 (43.75%), Postives = 109/176 (61.93%), Query Frame = 1
Query: 28 EPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELIAKGSK 546
EP T EA SSE PQW+ A+K E+D + W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+Y+E P+G+ +P Q G+ L K++YGL A W +KF ++ G K
Sbjct: 135 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 309
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6LGV6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LGV6_9ASTR) HSP 1 Score: 140 bits (352), Expect = 7.250e-33 Identity = 76/176 (43.18%), Postives = 109/176 (61.93%), Query Frame = 1
Query: 28 EPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELIAKGSK 546
EP T +A SSE PQW+ A+K E+D + W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+Y+E P+G+ +P Q G+ L K++YGL A W +KF ++ G K
Sbjct: 70 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNRTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 244
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6NFL8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFL8_9ASTR) HSP 1 Score: 139 bits (350), Expect = 9.670e-33 Identity = 77/185 (41.62%), Postives = 112/185 (60.54%), Query Frame = 1
Query: 1 TGLASYLPD-EPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYR--DSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGSK 546
T +Y+ + EP T EA SSE PQW+ A+K E+D + W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+Y+E P+G+ +V +L K++YGL A W +KF ++ G K
Sbjct: 125 TDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGFSALGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 309
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6NLM6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NLM6_9ASTR) HSP 1 Score: 140 bits (354), Expect = 1.200e-32 Identity = 76/176 (43.18%), Postives = 109/176 (61.93%), Query Frame = 1
Query: 28 EPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYRDSPNQVGR---LQKAMYGLMHAGLLWSKKFGGELIAKGSK 546
EP T +A SSE PQW+ A+K E+D + W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+Y+E P+G+ +P Q G+ L K++YGL A W +KF ++ G K
Sbjct: 769 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWEIVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGF-SAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 943
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Match: A0A5N6MWY0_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MWY0_9ASTR) HSP 1 Score: 139 bits (349), Expect = 1.860e-32 Identity = 77/185 (41.62%), Postives = 113/185 (61.08%), Query Frame = 1
Query: 1 TGLASYLPD-EPTTLHEAKMSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMAQLDWEGRQLDVEMAFLEADVTEELYVELPDGYR--DSPNQVGRLQKAMYGLMHAGLLWSKKFGGELIAKGSK 546
T +Y+ + EP T EA SSE PQW+ A+K E+D + +W++VD P G LG + IFKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ A + E Q+DV+ AFL D+ EE+Y+E P+G+ +V +L K++YGL A W +KF ++ G K
Sbjct: 60 TDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDLILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGFSALGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFK 244 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig646.17400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig646.17400.1 >prot_F-serratus_M_contig646.17400.1 ID=prot_F-serratus_M_contig646.17400.1|Name=mRNA_F-serratus_M_contig646.17400.1|organism=Fucus serratus male|type=polypeptide|length=178bp MSSEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTIFKRKVGQDback to top mRNA from alignment at F-serratus_M_contig646:1865..3396- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig646.17400.1 ID=mRNA_F-serratus_M_contig646.17400.1|Name=mRNA_F-serratus_M_contig646.17400.1|organism=Fucus serratus male|type=mRNA|length=1532bp|location=Sequence derived from alignment at F-serratus_M_contig646:1865..3396- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig646:1865..3396- >mRNA_F-serratus_M_contig646.17400.1 ID=mRNA_F-serratus_M_contig646.17400.1|Name=mRNA_F-serratus_M_contig646.17400.1|organism=Fucus serratus male|type=CDS|length=1068bp|location=Sequence derived from alignment at F-serratus_M_contig646:1865..3396- (Fucus serratus male)back to top |