mRNA_F-serratus_M_contig6456.17398.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6456.17398.1
Unique NamemRNA_F-serratus_M_contig6456.17398.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: D8LHI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 3.090e-24
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 2
Query:    8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPFST-MFVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVVNK 301
            LGI+FP+AI  VG SL AL SAK AG+ YP   +++  G+GTM+ SLFGSPF T M+  +P +K SG +TG   ING+ Y+ LS  FGLVA IRS+VN+
Sbjct:  265 LGIVFPIAISAVGTSLMALVSAKAAGDAYPVTESMVADGVGTMITSLFGSPFGTVMYFGHPAYKKSGAKTGYSLINGLLYLFLS-WFGLVALIRSIVNQ 362          
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A3C0EN88_9BACT (Permease n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3C0EN88_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 3.990e-13
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 2
Query:    8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCF 265
            + IIFP+ +F +  SL  L+SA+ AG+VYPT+ +LLV G+G++V S+FGS F +T+++ +P  K  G   G   +NGIA  + + CF
Sbjct:  250 MSIIFPMGLFNIIGSLQNLESAEAAGDVYPTRSSLLVNGLGSIVASMFGSCFPTTIYIGHPGWKAMGARAGYSILNGIA--ITAVCF 334          
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A2E2AWL4_9BACT (Permease n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2AWL4_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 1.390e-12
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 2
Query:    8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCF 265
            + IIFP+ +F +  SL  L+SA+ AG+ +PT+ +LLV GIG+++ SLFGS F +T+++ +P  K  G   G   +NGIA  ++  CF
Sbjct:  250 MSIIFPMGLFNIIGSLQNLESAEAAGDQFPTRSSLLVNGIGSIIASLFGSTFPTTIYIGHPGWKAMGARAGYSVLNGIAIAIV--CF 334          
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: M6DE27_9LEPT (Putative membrane protein n=15 Tax=Leptospira TaxID=171 RepID=M6DE27_9LEPT)

HSP 1 Score: 70.5 bits (171), Expect = 4.820e-12
Identity = 38/97 (39.18%), Postives = 66/97 (68.04%), Query Frame = 2
Query:    8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVV 295
            L +I P+ IF V  SL  ++SA+ AG+ + T+ +L++ G+GT+V SLFGSPF +T+++ +P  K  G  +G   +NGI ++ L + FGLV+ + +++
Sbjct:  256 LSVILPMGIFNVIGSLQNIESAEAAGDKFNTRNSLMMNGVGTIVGSLFGSPFPTTIYIGHPGWKSLGARSGYSSLNGI-FMTLIAFFGLVSFVCALI 351          
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A5F1ZQN4_9LEPT (NCS2 family permease n=2 Tax=Leptospira TaxID=171 RepID=A0A5F1ZQN4_9LEPT)

HSP 1 Score: 69.7 bits (169), Expect = 8.990e-12
Identity = 38/97 (39.18%), Postives = 62/97 (63.92%), Query Frame = 2
Query:    8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVV 295
            L II P+ IF V  SL  ++SA+ AG+ + T+ +L+V G+GTMV SLFGSPF +T+++ +P  K  G   G   +NG+ ++ L +  GL+  +  ++
Sbjct:  256 LSIILPMGIFNVIGSLQNIESAEAAGDKFNTRNSLMVNGLGTMVGSLFGSPFPTTIYIGHPGWKALGARAGYSSLNGV-FMTLVAFLGLIGFVSKLI 351          
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A2P2E4K6_9LEPT (Permease transmembrane protein n=1 Tax=Leptospira ryugenii TaxID=1917863 RepID=A0A2P2E4K6_9LEPT)

HSP 1 Score: 68.9 bits (167), Expect = 1.680e-11
Identity = 37/97 (38.14%), Postives = 65/97 (67.01%), Query Frame = 2
Query:    8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVV 295
            L +I P+ IF V  SL  ++SA+ +G+ +PTK +LLV G+GT++ + FGSPF +T+++ +P  K  G + G   +NGI ++ +   FGL+  ++++V
Sbjct:  255 LAVILPMGIFNVIGSLQNIESAEASGDSFPTKTSLLVNGLGTIIGTFFGSPFPTTIYIGHPGWKGLGAKHGYSVLNGI-FMSIVCFFGLMGILQALV 350          
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A4V3JRW2_9LEPT (NCS2 family permease n=1 Tax=Leptospira ognonensis TaxID=2484945 RepID=A0A4V3JRW2_9LEPT)

HSP 1 Score: 68.9 bits (167), Expect = 1.680e-11
Identity = 37/97 (38.14%), Postives = 64/97 (65.98%), Query Frame = 2
Query:    8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVV 295
            L +I P+ IF V  SL  ++SA+ +G+ + TK +LL  GIGT+V +LFGSPF +T+++ +P  K  G + G   +NGI ++ +   FGL+  +++++
Sbjct:  255 LAVILPMGIFNVIGSLQNIESAEASGDHFDTKSSLLANGIGTLVGTLFGSPFPTTIYIGHPGWKGLGAKHGYSVLNGI-FITIVCLFGLMGILQALI 350          
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A5F1YNZ9_9LEPT (NCS2 family permease n=4 Tax=Leptospira wolffii TaxID=409998 RepID=A0A5F1YNZ9_9LEPT)

HSP 1 Score: 65.5 bits (158), Expect = 2.770e-10
Identity = 37/97 (38.14%), Postives = 61/97 (62.89%), Query Frame = 2
Query:    8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVV 295
            L II P+ IF V  SL  ++SA+ AG+ + T+ +L+  G+GT+V SLFGSPF +T+++ +P  K  G  +G   +NGI ++   +  GL+  +  +V
Sbjct:  256 LSIILPMGIFNVIGSLQNIESAEAAGDKFNTRNSLMANGVGTIVGSLFGSPFPTTIYIGHPGWKALGARSGYSTLNGI-FMTAIAFLGLMGFVSKLV 351          
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: A0A7C6TEG7_9CHLR (Xanthine permease n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6TEG7_9CHLR)

HSP 1 Score: 65.1 bits (157), Expect = 3.770e-10
Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 2
Query:   23 PVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPFSTM-FVEYPVHKMSGGETG*CFINGIAYVLLSSCFGLVAPIRSVV 295
            P+AI+    SL  ++SA+ AG+ Y T+ T+LV GIGT++ SLFGSPF T+ ++ +P  K  G   G  + +G+  +LL    GL+  + +++
Sbjct:  258 PLAIYLFLESLNNVESAEAAGDSYSTRETMLVAGIGTLIGSLFGSPFPTLVYIGHPGWKSVGARVGYSWASGLV-ILLLGVLGLLPILLNII 348          
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Match: Q7U3V7_PARMW (Uncharacterized protein n=1 Tax=Parasynechococcus marenigrum (strain WH8102) TaxID=84588 RepID=Q7U3V7_PARMW)

HSP 1 Score: 65.1 bits (157), Expect = 3.770e-10
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    8 LGIIFPVAIFTVGMSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPF-STMFVEYPVHKMSGGETG*CFINGIAYVL--LSSCFGLVAPIRSV 292
            LG+I P+ +F +  SL  L+SA  AG+ YPT+G+LLV G GT+  +  GS F +T+++ +P  K  G  +   ++NG+   +  L   FG+V  +  V
Sbjct:  261 LGVIVPMGLFNLIGSLQNLESAAAAGDAYPTRGSLLVDGCGTLTAAALGSCFPTTLYIGHPGFKALGARSAYSWMNGVVMAVGCLFGLFGVVTVLIPV 358          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6456.17398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHI4_ECTSI3.090e-2455.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3C0EN88_9BACT3.990e-1343.68Permease n=1 Tax=Phycisphaerales bacterium TaxID=2... [more]
A0A2E2AWL4_9BACT1.390e-1242.53Permease n=1 Tax=Phycisphaeraceae bacterium TaxID=... [more]
M6DE27_9LEPT4.820e-1239.18Putative membrane protein n=15 Tax=Leptospira TaxI... [more]
A0A5F1ZQN4_9LEPT8.990e-1239.18NCS2 family permease n=2 Tax=Leptospira TaxID=171 ... [more]
A0A2P2E4K6_9LEPT1.680e-1138.14Permease transmembrane protein n=1 Tax=Leptospira ... [more]
A0A4V3JRW2_9LEPT1.680e-1138.14NCS2 family permease n=1 Tax=Leptospira ognonensis... [more]
A0A5F1YNZ9_9LEPT2.770e-1038.14NCS2 family permease n=4 Tax=Leptospira wolffii Ta... [more]
A0A7C6TEG7_9CHLR3.770e-1038.04Xanthine permease n=1 Tax=Chloroflexi bacterium Ta... [more]
Q7U3V7_PARMW3.770e-1036.73Uncharacterized protein n=1 Tax=Parasynechococcus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6456contigF-serratus_M_contig6456:8941..9714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue3.6e-08
Seed eggNOG ortholog2880.D8LHI4
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.purine nucleobase transmembrane transporter activity
EggNOG OGs2QRYA@2759,COG2252@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size301
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6456.17398.1prot_F-serratus_M_contig6456.17398.1Fucus serratus malepolypeptideF-serratus_M_contig6456 9331..9668 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931993.1917856-UTR-F-serratus_M_contig6456:8940..90191622931993.1917856-UTR-F-serratus_M_contig6456:8940..9019Fucus serratus maleUTRF-serratus_M_contig6456 8941..9019 -
1690964092.9495547-UTR-F-serratus_M_contig6456:8940..90191690964092.9495547-UTR-F-serratus_M_contig6456:8940..9019Fucus serratus maleUTRF-serratus_M_contig6456 8941..9019 -
1622931993.2086525-UTR-F-serratus_M_contig6456:9328..93301622931993.2086525-UTR-F-serratus_M_contig6456:9328..9330Fucus serratus maleUTRF-serratus_M_contig6456 9329..9330 -
1690964092.9604733-UTR-F-serratus_M_contig6456:9328..93301690964092.9604733-UTR-F-serratus_M_contig6456:9328..9330Fucus serratus maleUTRF-serratus_M_contig6456 9329..9330 -
1622931993.25068-UTR-F-serratus_M_contig6456:9668..97141622931993.25068-UTR-F-serratus_M_contig6456:9668..9714Fucus serratus maleUTRF-serratus_M_contig6456 9669..9714 -
1690964092.9980521-UTR-F-serratus_M_contig6456:9668..97141690964092.9980521-UTR-F-serratus_M_contig6456:9668..9714Fucus serratus maleUTRF-serratus_M_contig6456 9669..9714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931993.2219265-CDS-F-serratus_M_contig6456:9330..94671622931993.2219265-CDS-F-serratus_M_contig6456:9330..9467Fucus serratus maleCDSF-serratus_M_contig6456 9331..9467 -
1690964092.9725506-CDS-F-serratus_M_contig6456:9330..94671690964092.9725506-CDS-F-serratus_M_contig6456:9330..9467Fucus serratus maleCDSF-serratus_M_contig6456 9331..9467 -
1622931993.2350173-CDS-F-serratus_M_contig6456:9631..96681622931993.2350173-CDS-F-serratus_M_contig6456:9631..9668Fucus serratus maleCDSF-serratus_M_contig6456 9632..9668 -
1690964092.9872236-CDS-F-serratus_M_contig6456:9631..96681690964092.9872236-CDS-F-serratus_M_contig6456:9631..9668Fucus serratus maleCDSF-serratus_M_contig6456 9632..9668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6456.17398.1

>prot_F-serratus_M_contig6456.17398.1 ID=prot_F-serratus_M_contig6456.17398.1|Name=mRNA_F-serratus_M_contig6456.17398.1|organism=Fucus serratus male|type=polypeptide|length=58bp
MSLTALDSAKTAGNVYPTKGTLLVGGIGTMVCSLFGSPFSTMFVEYPVHK
MSGGETG*
back to top

mRNA from alignment at F-serratus_M_contig6456:8941..9714-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6456.17398.1 ID=mRNA_F-serratus_M_contig6456.17398.1|Name=mRNA_F-serratus_M_contig6456.17398.1|organism=Fucus serratus male|type=mRNA|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig6456:8941..9714- (Fucus serratus male)
ACATACCCTAGGGATCATCTTCCCCGTCGCTATCTTCACCGTGGGCATGT CACTCACGGCCCTCGACAGCGCCAAGACCGCAGGTACCGCCCGATTTATT CACCGCGTGGCCTTTAGTATATTCCTCCGCTGTCGCTGCCTTCCGCTCGC CCACTCCTTGTCACCTGTTGGTCGCAGACCAAATAGAAACCACTTATTAT TTCCAGCGGGAATTTACCTCCCACACTTTCTCAATGTAAAATTCCAGGCA ATGTATACCCCACGAAGGGGACCTTGCTTGTAGGCGGTATCGGAACAATG GTCTGCTCGTTGTTCGGGTCACCCTTCAGCACCATGTTTGTTGAGTACCC TGTCCACAAGATGTCGGGCGGCGAGACCGGATAATGGTGCGGCCCCAAGT AGGCCATACTGTACTCCAATACCTCTCCGACCTCAAGCATCAACTCTTTT CTTCTTCTATAGCGTTGCTGTGTAGACTTGTTTGCCCCTCTCGTGGCACC GTTCAACAGAATTCAATACTTGAAAGCGGGCTTTACGGTTGCGTGTCATG GCACTTGATGGCGTGCGCAACGCGCTGCATATGAGAAACAACATTGGAAG TGACAACTCCTGCCCACTCTCCGCCCGGCCCCGCCTTCGGTCACATTTCC TCCAAAACACGTCGTCCGCCGCGGCGATGGACGTGATGCCTACAGCTTCA TCAACGGCATCGCGTACGTGCTCCTGTCGTCGTGCTTTGGCCTCGTGGCA CCCATCCGCTCCGTCGTCAACAAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6456:8941..9714-

>mRNA_F-serratus_M_contig6456.17398.1 ID=mRNA_F-serratus_M_contig6456.17398.1|Name=mRNA_F-serratus_M_contig6456.17398.1|organism=Fucus serratus male|type=CDS|length=348bp|location=Sequence derived from alignment at F-serratus_M_contig6456:8941..9714- (Fucus serratus male)
ATGTCACTCACGGCCCTCGACAGCGCCAAGACCGCAGATGTCACTCACGG
CCCTCGACAGCGCCAAGACCGCAGGCAATGTATACCCCACGAAGGGGACC
TTGCTTGTAGGCGGTATCGGAACAATGGTCTGCTCGTTGTTCGGGTCACC
CTTCAGCACCATGTTTGTTGAGTACCCTGTCCACAAGATGTCGGGCGGCG
AGACCGGATAAGCAATGTATACCCCACGAAGGGGACCTTGCTTGTAGGCG
GTATCGGAACAATGGTCTGCTCGTTGTTCGGGTCACCCTTCAGCACCATG
TTTGTTGAGTACCCTGTCCACAAGATGTCGGGCGGCGAGACCGGATAA
back to top