mRNA_F-serratus_M_contig6456.17397.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6456.17397.1
Unique NamemRNA_F-serratus_M_contig6456.17397.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6456.17397.1 vs. uniprot
Match: D8LHI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 2.200e-63
Identity = 110/179 (61.45%), Postives = 130/179 (72.63%), Query Frame = 1 
Query:  352 ADWVINITARTPLAGLAEDGTAYNSNLTDLPEGWWGMLGFKRGAILVSLCWVAILVHIIDRKWWQAAVWALFSSILTSVGIIHVQVTGFDFFTKTAGILCSPVTEDDGIVASVTCWEHGNWLQYFIAYLMMGVVFTGIEALRRAAIGDLDASIECSEADDDFKGWLNKEENMVENIIEE 888
            ADWV NI AR PLAG+AEDGT YN+NL DL +GWWG+LG KRGAILVSLCWVA+LVHIIDRKWWQA+VWA+ S+  T+VGIIHV V GFD FT T G LC+PVT+D  +V + +CW+H +   Y  AYLMM VVF  IE +RRA +G+LD  I   EAD  FK W   E       +EE
Sbjct:  401 ADWVTNIAARGPLAGVAEDGTDYNTNLPDLTDGWWGILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISACFTAVGIIHVPVAGFDDFTSTVGDLCTPVTDDLEVVTTASCWDHADQWHYMTAYLMMAVVFVAIEGVRRAGVGNLDEPILTEEADA-FKDWYGDEPPTTGPKVEE 578
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BLAST of mRNA_F-serratus_M_contig6456.17397.1 vs. uniprot
Match: A0A7S2UIB7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIB7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.490e-24
Identity = 64/173 (36.99%), Postives = 88/173 (50.87%), Query Frame = 1 
Query:  355 DWVINITARTPLAGLAEDGTAYNSNLTDLPEGWWGMLGFKRGAILVSLCWVAILVHIIDRKWWQAAVWALFSSILTSVGIIHVQVTGFDFFTKTAGILCSPVTEDDGIVASVTCWEHGNWLQYFIAYLMMGVVFTGIEALRRAAIGDLDASIECSEADDDFKGWLNKEENMVE 873
            DWV N+T   P+      G   N NLT LP+ W+G+L +KRGA+LVS  WVA+LV +IDRKW +AAVW+   ++    GIIHV   GF  F        +PV E   + +   CW+      +F+AYLM+   F  IE  R   + D        E    F  W    + ++E
Sbjct:   28 DWVTNVTNTGPIQDFESGG---NINLTGLPQ-WFGLLAWKRGALLVSFVWVAMLVSVIDRKWKKAAVWSTMGALFALFGIIHVPEAGFANFA-------TPVWEQC-VSSPGNCWDFAEQYMFFVAYLMLTGTFALIEVARSMGLDDTLLPAIVDEEGVSFGDWYANADKIIE 188
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BLAST of mRNA_F-serratus_M_contig6456.17397.1 vs. uniprot
Match: A0A1Z5K0X1_FISSO (Putative MFS transporter, AGZA family, xanthine/uracil permease n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0X1_FISSO)

HSP 1 Score: 118 bits (296), Expect = 6.900e-24
Identity = 63/176 (35.80%), Postives = 94/176 (53.41%), Query Frame = 1 
Query:  355 DWVINITARTPLAGLAEDGTAYNSNLTDLPEGWWGMLGFKRGAILVSLCWVAILVHIIDRKWWQAAVWALFSSILTSVGIIHVQVTGFDFFTKTAGILCSPVTEDDGIVASVTCWEHGNWLQYFIAYLMMGVVFTGIEALRRAAIGD-LDASIECSEADDDFKGWLNKEENMVENI 879
            DWV+N++ R+PL   A+  T +        +GW+G+L +KRGA+LVS  WVAILV +IDR+W +A  W+L ++  +  GIIH+   G +  ++     C          A  +CWEHG    YF+AYLM   +F  IE  RR+ + + L   +E     D+FK W    E     +
Sbjct:  511 DWVVNVSNRSPLGNDADGNTNFPGG-----DGWFGILAWKRGALLVSFVWVAILVSVIDRQWNKATFWSLLAAGFSLFGIIHMPEAGLEKLSEPFWEQCP---------AGGSCWEHGEQWMYFVAYLMFAGIFVLIELARRSGLDEQLLPGLE-DPTSDEFKDWFRDAEKTTHTV 671
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6456.17397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHI4_ECTSI2.200e-6361.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UIB7_9STRA2.490e-2436.99Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1Z5K0X1_FISSO6.900e-2435.80Putative MFS transporter, AGZA family, xanthine/ur... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6456contigF-serratus_M_contig6456:5045..8788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue2.4e-40
Seed eggNOG ortholog2880.D8LHI4
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.purine nucleobase transmembrane transporter activity
EggNOG OGs2QRYA@2759,COG2252@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2255
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6456.17397.1prot_F-serratus_M_contig6456.17397.1Fucus serratus malepolypeptideF-serratus_M_contig6456 6394..8047 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931993.0223045-UTR-F-serratus_M_contig6456:5044..63931622931993.0223045-UTR-F-serratus_M_contig6456:5044..6393Fucus serratus maleUTRF-serratus_M_contig6456 5045..6393 -
1690964092.8747916-UTR-F-serratus_M_contig6456:5044..63931690964092.8747916-UTR-F-serratus_M_contig6456:5044..6393Fucus serratus maleUTRF-serratus_M_contig6456 5045..6393 -
1622931993.1268706-UTR-F-serratus_M_contig6456:8047..80511622931993.1268706-UTR-F-serratus_M_contig6456:8047..8051Fucus serratus maleUTRF-serratus_M_contig6456 8048..8051 -
1690964092.9324613-UTR-F-serratus_M_contig6456:8047..80511690964092.9324613-UTR-F-serratus_M_contig6456:8047..8051Fucus serratus maleUTRF-serratus_M_contig6456 8048..8051 -
1622931993.1427846-UTR-F-serratus_M_contig6456:8333..87881622931993.1427846-UTR-F-serratus_M_contig6456:8333..8788Fucus serratus maleUTRF-serratus_M_contig6456 8334..8788 -
1690964092.9404497-UTR-F-serratus_M_contig6456:8333..87881690964092.9404497-UTR-F-serratus_M_contig6456:8333..8788Fucus serratus maleUTRF-serratus_M_contig6456 8334..8788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931993.0445619-CDS-F-serratus_M_contig6456:6393..64541622931993.0445619-CDS-F-serratus_M_contig6456:6393..6454Fucus serratus maleCDSF-serratus_M_contig6456 6394..6454 -
1690964092.8842509-CDS-F-serratus_M_contig6456:6393..64541690964092.8842509-CDS-F-serratus_M_contig6456:6393..6454Fucus serratus maleCDSF-serratus_M_contig6456 6394..6454 -
1622931993.0603387-CDS-F-serratus_M_contig6456:6762..68741622931993.0603387-CDS-F-serratus_M_contig6456:6762..6874Fucus serratus maleCDSF-serratus_M_contig6456 6763..6874 -
1690964092.8921251-CDS-F-serratus_M_contig6456:6762..68741690964092.8921251-CDS-F-serratus_M_contig6456:6762..6874Fucus serratus maleCDSF-serratus_M_contig6456 6763..6874 -
1622931993.07344-CDS-F-serratus_M_contig6456:7278..73511622931993.07344-CDS-F-serratus_M_contig6456:7278..7351Fucus serratus maleCDSF-serratus_M_contig6456 7279..7351 -
1690964092.9006362-CDS-F-serratus_M_contig6456:7278..73511690964092.9006362-CDS-F-serratus_M_contig6456:7278..7351Fucus serratus maleCDSF-serratus_M_contig6456 7279..7351 -
1622931993.091433-CDS-F-serratus_M_contig6456:7647..77011622931993.091433-CDS-F-serratus_M_contig6456:7647..7701Fucus serratus maleCDSF-serratus_M_contig6456 7648..7701 -
1690964092.912144-CDS-F-serratus_M_contig6456:7647..77011690964092.912144-CDS-F-serratus_M_contig6456:7647..7701Fucus serratus maleCDSF-serratus_M_contig6456 7648..7701 -
1622931993.1096241-CDS-F-serratus_M_contig6456:7900..80471622931993.1096241-CDS-F-serratus_M_contig6456:7900..8047Fucus serratus maleCDSF-serratus_M_contig6456 7901..8047 -
1690964092.9239936-CDS-F-serratus_M_contig6456:7900..80471690964092.9239936-CDS-F-serratus_M_contig6456:7900..8047Fucus serratus maleCDSF-serratus_M_contig6456 7901..8047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6456.17397.1

>prot_F-serratus_M_contig6456.17397.1 ID=prot_F-serratus_M_contig6456.17397.1|Name=mRNA_F-serratus_M_contig6456.17397.1|organism=Fucus serratus male|type=polypeptide|length=149bp
MLGFKRGAILVSLCWVAILVHIIDRKWWQAAVWALFSSILTSVGIIHVQV
TGFDFFTKTAGILCSPVTEDDGIVASVTCWEHGNWLQYFIAYLMMGVVFT
GIEALRRAAIGDLDASIECSEADDDFKGWLNKEENMVENIIEEKPKHE*
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mRNA from alignment at F-serratus_M_contig6456:5045..8788-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6456.17397.1 ID=mRNA_F-serratus_M_contig6456.17397.1|Name=mRNA_F-serratus_M_contig6456.17397.1|organism=Fucus serratus male|type=mRNA|length=3744bp|location=Sequence derived from alignment at F-serratus_M_contig6456:5045..8788- (Fucus serratus male)
CTTGAGCTCGCTTGATGTCAAAACTTGTGATGTACGTCATTGTGCGATCC
GGAAAAAGTGTTGCCAAAAGTACTTGGCACACCACTACAGTACAAACGCT
GCTACGTAGTACGACTTGCTTGATGTCCCCTTGAAAACCACCCCAGGTTT
GGAATTCATCCGCCAAAAGCTTAGGTAAAAGAAATGAAGGTAAATAGCTT
CAATGCACTTGTGGCATGTCGTTGCGTGCAAGATTTCGTATTTTGAAGGC
TGGCTGCTAGCTGTGGAAACCTCCACTTGCTCCTGCTTTGCGGGGGCATC
TTAGTGCTATCCAATGCCGACAAGTCTTATATTTCGGCCGGATCGGTTTG
TGCAGACTGGGTGATCAACATCACCGCGCGCACACCATTGGCTGGCCTCG
CGGAAGACGGAACTGCCTACAACTCCAACCTGACTGATCTCCCCGAAGGG
TGGTGGTGAGTCGATGGGGAAACCAACGTCGTACGAAATGTGAGGGTGGT
TGCTGTAGTAGTGAAAATGTTGTTCCCCTTCGCGTTTTTCGCTCTGTGTA
CCATAATACTATAAGCCATGTTGTCGAAGTGCACGGGCCCGTACACCCTT
TGCGTCGAGGCTGGGGCTCGCCGACCAGTCCGAGGCATGCGTCATGGTAT
CATCGCTTGCATATAATATATCCCGGATCCAAGTACTTAAGCGGCGAGTG
ACCAAATGACCCATTTTTTGCGATTTTCTCCGTAAAGGGGCATGCTCGGC
TTCAAGCGCGGGGCCATTCTCGTGTCTCTCTGCTGGGTTGCCATTCTGGT
GCACATCATCGACCGCAAGTGGTGGCAGGCGGCCGTTTGGGCTCTCTTCT
CGTCCATCCTTACCTCGGTTGGCATTATCCACGTGCAGGTGAGGCAGGCG
TCTTCTCACGCTTAGACACCGCTGCAAATCGTGCCGCTGAAACCTCGGTT
TTCTCTCGCCTAGATTCCAACGAACGCTTACTACTTGGTGCGATGCCGCT
TCGCTTTGTCATTTTGGGAAAGGCAGCAGACAGACTACTATTAGTACCCT
CAAGCCTATCGCCCTGCCTTGCAACGCAACTGTATAGGTGACTGGGTTCG
ACTTCTTCACTAAAACCGCAGGGATCCTTTGCTCGCCTGTGGTGAGTCAA
TTTAGACTAACACCAATACTGCACGTTTGTACTGCATGGCTAGAGTGGTG
TTGCATCTATGAAGCAGCGGTATCGTGTTCATAGGCCGTCGCGTGTACTA
TTATTGTGCCTACGTACCGCGCCATTTTATATTGCCTACGCGGTCATGAT
TGCTGCTGGCGCCGGTCGTGTACTATAGTGGAGATATATTGGACAGCGTA
TCTGGTTAACGTCGCGTACATTAGTACGAGTGCCGAGCCAGTATGGATTT
CCTATTTATGTGACGCCGCGTGTCCACTTTGCTTCAGACGGAGGATGATG
GCATCGTAGCCAGCGTGACCTGCTGGGAACACGGCAACTGGTTGCAGTAC
TTTATCGCATGTGAGTCGACTGCCGGTTGTTAAAGCGTGATGGCATCATC
CTTCTAATGAGTTGTACGGGTGACATCAGACGCTGGTGTTGCCCTGCGAC
TAGAGTCGGTTTTCAGGTCGACCAAGTCCTAGGACTACTACATACAGTCG
AGTTGGCACACGAGGATTAACATACGGTACAAAATATCTCAAAAACTGTT
ATTCTTCACGCTCCGGAGTATAATACTTTCGGTTTGTTGTGAATGACTTT
ATGGCTGCTCCAGAACGTTTTAATGGAATCTGAAACTCGTCGTGACTACC
ACCCGTCGATCAACCAAACCACCCCAAGCCCTCAAAAATGCGTCGCACTC
GTTTCCTCATCAAACACATCGCCCGAATCACAACCCCTGGCGCGCCAACA
ATCCGCACATCCAGACCTGATGATGGGAGTAGTTTTCACCGGGATCGAGG
CCCTCAGGCGTGCGGCTATCGGTGACCTTGATGCATCGATCGAGTGTTCT
GAGGCAGATGACGATTTCAAGGGCTGGTGAGTGAAACTATATAACACTAC
AGACACTGAATGAGTCGGAACAGGTCTGACGAGAAGCAGACTCAAGTAAG
TACAGTCAACATCGTACCGGTAGTAAAGTAGATGCCCATGATGCTCTGGG
TGCCCTGGTCGGAGAGAACGGCAGAGGACGTTTTCCGAGCTCTTTTTCAT
TTTGGGAGGTAAGGCCCAGTGGCTATCACAAGAAAATATATTTCCGCGAC
TGTGTAGAGTAACGCCTCTGGGCAACGTGCTGACTTCCCACCCTCCCTGG
AAATCGTACTCCGTCGTCATGTGTTACTTGACAGGCTTAACAAGGAGGAA
AATATGGTCGAGAATATTATTGAAGAGAAGCCCAAACATGAGTAATCTGA
GATCGAAGCCATCACGAACACCATCCTATGATATTTGGCTCTGATTGTAA
CCAACCTTTCAATGCCAGAAAACGATTCCGACTGAAGACACCCAGTAGCT
ACCTTCTCTGGGTATCCGCCAGAAGAGGCTCTAAATGACGGCGGCCACGA
CAGTTTTACAGTGGTACTCTACGTCTGATCCGGAAAAATGTACTCTACTA
GGCATGAGGCTTCAAACGCCAAGAAGACTATACCCTTCATCTGAATTATA
ATGGCCCGTCTTAATTAAGTAGATAAATGCGTCACGTATTTGAGCCTCAT
CTACGAGCGTACTATAATGTAGTGTACTCGACTTTTAATATCTGAAGTGG
GAGGTCATACTTGAGGGTGTGATTACTAGTAGAGCAAGATCTCTGAGGTA
CTGTTGGCACTACCATTCCCACTTTCTCATTCTGTATTAATGTTGCTGTT
GATGCCATTTTCTTGAATATACGTAAGGTCGGACAGGGTGAAAATATCCC
ACAAAATCAACGTAGTTAAAACTAACTTAATTAGAAACCTGTTCGAGTAT
ACTGATGAAGACTGACCAACGTATGTACGTATGTATGGTAGTCTCTACAG
AGGAATTATCTTTCTTAGAAATCCATCATGTAGACGCTGCCTTAAATTTC
CACCTGGTTCTGCCGTCAGCCGCGCCAGGCATGTCGTATCTATCTACAGT
CGGTTCTCGAGTCAGTGTCTTCGCATATTGCCATACTATACTTAAAATTA
GCCATGTGCAGCTGGTGCTCTATTTAGCACTGCTTACTGGAGATCTGCTT
TGTTGAAATCGATAAGGGGGTGCTTAATACATGAAGCTGAGGAGCCTGTT
TCTACTAAACCCCGGGTTGGATAAGGCTTTGCTGAACGAAGTAATGAAGT
GTGCACAACGTCGGCAAAAACGTATTGGAATCACCATGGAATCGAGAAGA
CCGCGAATTCTTTCTGGATACTTTTCAAAGCATGTGCATGCCTTTTTGTT
CAGGGGGACTTCATAAACTAGGAGGCCCGGGGTATGCTGCTGGAGTACTC
GGGGTAAAACCGAACGTTGTAAATATATTATGTACAGCGAAGCGTAAGCA
CGATTATTCCTGTCTACCATGATTTCTGAATGGAGCAAGTGTTTGACGGG
AGGTCTTGAAGTCCCAGAATGCTCGATTGCTTATTGAAAATATGCGTCCG
TGCTGGAGTTGGGTGTCTGTTTTACGCCGAGAGGACACTATTTCTAACTT
CAGTGCACTAGCGGTGTTCTCCTTTCTTCACTCTATGTCCTCTGTAGGAG
CTCGGAGTTCAGTGCAAGAGAAGCCTGCCAAATAGGCAAGGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6456:5045..8788-

>mRNA_F-serratus_M_contig6456.17397.1 ID=mRNA_F-serratus_M_contig6456.17397.1|Name=mRNA_F-serratus_M_contig6456.17397.1|organism=Fucus serratus male|type=CDS|length=894bp|location=Sequence derived from alignment at F-serratus_M_contig6456:5045..8788- (Fucus serratus male)
ATGCTCGGCTTCAAGCGCGGGGCCATTCTCGTGTCTCTCTGCTGGGTTGC
CATTCTGGTGCACATCATCGACCGCAAGTGGTGGCAGGCGGCCGTTTGGG
CTCTCTTCTCGTCCATCCTTACCTCGGTTGGCATTATCCACGTGCAGATG
CTCGGCTTCAAGCGCGGGGCCATTCTCGTGTCTCTCTGCTGGGTTGCCAT
TCTGGTGCACATCATCGACCGCAAGTGGTGGCAGGCGGCCGTTTGGGCTC
TCTTCTCGTCCATCCTTACCTCGGTTGGCATTATCCACGTGCAGGTGACT
GGGTTCGACTTCTTCACTAAAACCGCAGGGATCCTTTGCTCGCCTGTGGT
GACTGGGTTCGACTTCTTCACTAAAACCGCAGGGATCCTTTGCTCGCCTG
TGACGGAGGATGATGGCATCGTAGCCAGCGTGACCTGCTGGGAACACGGC
AACTGGTTGCAGTACTTTATCGCATACGGAGGATGATGGCATCGTAGCCA
GCGTGACCTGCTGGGAACACGGCAACTGGTTGCAGTACTTTATCGCATAC
CTGATGATGGGAGTAGTTTTCACCGGGATCGAGGCCCTCAGGCGTGCGGC
TATCGGTGACCTTGATGCATCGATCGAGTGTTCTGAGGCAGATGACGATT
TCAAGGGCTGACCTGATGATGGGAGTAGTTTTCACCGGGATCGAGGCCCT
CAGGCGTGCGGCTATCGGTGACCTTGATGCATCGATCGAGTGTTCTGAGG
CAGATGACGATTTCAAGGGCTGGCTTAACAAGGAGGAAAATATGGTCGAG
AATATTATTGAAGAGAAGCCCAAACATGAGTAAGCTTAACAAGGAGGAAA
ATATGGTCGAGAATATTATTGAAGAGAAGCCCAAACATGAGTAA
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