mRNA_F-serratus_M_contig645.17394.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig645.17394.1
Unique NamemRNA_F-serratus_M_contig645.17394.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig645.17394.1 vs. uniprot
Match: D8LDL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL3_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 3.710e-45
Identity = 71/104 (68.27%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 YRALLLGYGSGGDADKVLQCIEEAHILRGHFSDHVGDGTPKLSWETYCVALEAIAKCCSVDRHRGTRPRWGIMPGQDRLIMDIGPLQVPEEDADRIKEMQMAGM 312
            YRALLL Y +GGDADKVLQCIEE H+L GH +D++GDGTP+L W+ YC +L+AIA+C SV RHRGT  RWGI+PGQD L+MDI  L+VPEED  R++EMQMA M
Sbjct:  475 YRALLLAYSNGGDADKVLQCIEEVHVLEGHTADNLGDGTPRLPWQAYCDSLDAIARCTSVGRHRGTPARWGILPGQDSLVMDITSLEVPEEDFSRVREMQMAAM 578
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BLAST of mRNA_F-serratus_M_contig645.17394.1 vs. uniprot
Match: A0A6H5L4T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T9_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 6.420e-42
Identity = 68/104 (65.38%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:    1 YRALLLGYGSGGDADKVLQCIEEAHILRGHFSDHVGDGTPKLSWETYCVALEAIAKCCSVDRHRGTRPRWGIMPGQDRLIMDIGPLQVPEEDADRIKEMQMAGM 312
            YRALLL Y +GGDADKVLQCIEE H+L GH +D++G+GT KL W+ YC +L+AIA+C SV RHRG   RWGI+PGQD L+MDI  L+VPEED  R++ MQMA M
Sbjct:  515 YRALLLAYSNGGDADKVLQCIEELHVLEGHTADNLGNGTAKLPWQAYCDSLDAIARCTSVGRHRGIPARWGILPGQDSLVMDITSLEVPEEDFSRVRGMQMAAM 618
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig645.17394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDL3_ECTSI3.710e-4568.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4T9_9PHAE6.420e-4265.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig645contigF-serratus_M_contig645:417715..419772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue6e-38
Seed eggNOG ortholog2880.D8LDL3
KEGG koko:K08737,ko:K17710
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03016,ko03029,ko03400
Exons3
Model size315
Cds size312
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig645.17394.1prot_F-serratus_M_contig645.17394.1Fucus serratus malepolypeptideF-serratus_M_contig645 417717..419772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931992.4192343-CDS-F-serratus_M_contig645:417716..4178221622931992.4192343-CDS-F-serratus_M_contig645:417716..417822Fucus serratus maleCDSF-serratus_M_contig645 417717..417822 -
1690964092.5888176-CDS-F-serratus_M_contig645:417716..4178221690964092.5888176-CDS-F-serratus_M_contig645:417716..417822Fucus serratus maleCDSF-serratus_M_contig645 417717..417822 -
1622931992.4351015-CDS-F-serratus_M_contig645:419072..4192491622931992.4351015-CDS-F-serratus_M_contig645:419072..419249Fucus serratus maleCDSF-serratus_M_contig645 419073..419249 -
1690964092.6078594-CDS-F-serratus_M_contig645:419072..4192491690964092.6078594-CDS-F-serratus_M_contig645:419072..419249Fucus serratus maleCDSF-serratus_M_contig645 419073..419249 -
1622931992.4493408-CDS-F-serratus_M_contig645:419743..4197721622931992.4493408-CDS-F-serratus_M_contig645:419743..419772Fucus serratus maleCDSF-serratus_M_contig645 419744..419772 -
1690964092.6171365-CDS-F-serratus_M_contig645:419743..4197721690964092.6171365-CDS-F-serratus_M_contig645:419743..419772Fucus serratus maleCDSF-serratus_M_contig645 419744..419772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig645.17394.1

>prot_F-serratus_M_contig645.17394.1 ID=prot_F-serratus_M_contig645.17394.1|Name=mRNA_F-serratus_M_contig645.17394.1|organism=Fucus serratus male|type=polypeptide|length=104bp
YRALLLGYGSGGDADKVLQCIEEAHILRGHFSDHVGDGTPKLSWETYCVA
LEAIAKCCSVDRHRGTRPRWGIMPGQDRLIMDIGPLQVPEEDADRIKEMQ
MAGM
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mRNA from alignment at F-serratus_M_contig645:417715..419772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig645.17394.1 ID=mRNA_F-serratus_M_contig645.17394.1|Name=mRNA_F-serratus_M_contig645.17394.1|organism=Fucus serratus male|type=mRNA|length=2058bp|location=Sequence derived from alignment at F-serratus_M_contig645:417715..419772- (Fucus serratus male)
TACCGTGCACTTCTCCTGGGCTACGGCAGGCGAGTGAACTAGCTCAACGC
ACCAGAAAACCTGCGGCATCATGTTGAAGCACGCAATGTCAACATATCGA
CCTGTTACCAGTATGTACCTTGGGCTACTGTTCACGCGGTAGATGATGAA
ATATGCCGGTGCGCAGGAACGGTCCACACCTTGACCCGAGCATACGTAGC
GTAATATGTAATATTCTGCCGCCCGGGGGCACAAAGCATATTTAGAGCAC
TATCGCCACCCGACGTCTGCATACCCTCACTTTTACGCTACATTTACTGT
TTTTATGTACACGACTCCATCACCTGCCTCCCTCCTCCCTATTATTGTAA
TAGATTCTTCTATGAAATAGTATAGTCTCGAGTTTTATTTCCTAGGCTTA
TCAATATAGAGTGTAGTTATTTTTTTTTAAGGACCCACTTGTCTCCCTCG
TGAGTACCCACGACCATGTCTTCGCACGGTGCTGTTTGGTTTTGTTCACT
ATGTAATCGTCGCAATACTCCAGTGGAGGGGATGCCGACAAGGTTTTGCA
GTGTATAGAGGAGGCGCACATCCTCCGGGGGCATTTCTCGGACCACGTGG
GAGACGGCACGCCGAAGCTGTCGTGGGAGACCTACTGCGTGGCGCTTGAA
GCGATCGCCAAGTGCTGCAGCGTCGACAGACACAGGGGCACTCGACCAAG
GTCAGGGAGGCTTACTCGTTAGAGGGGGAAACAAAACGGAGCTAGGTGTT
GGCGCAAGCGTTACGTCCGTCGAAGGGGAAGATGCCTTCGACGCGGGTAG
TTGATCTGCTTGCGGGAGGACAACGAGATGGTCTTGGTTTTGCGTGCCGT
TTTATTGTATTATTGTTGTTGCTTCGTTCTAGGCGTTTCTGGTGTGAGGT
GGCGTTGTTTTTCCGGGGCGGGCTATTTTTTCAGGATTCAACGCAACTGA
GTTAGTTAATTAGCGTTATGGACTAAGGAATATTAATTGCTACACAGGTG
TTCTATGTCTTTCACACCCCCTCGTTCGTGGGTATCATTACAATAAAACA
TATACCGCACTGACTGTAATACGACACTACAGTAGTAGAGTACATGTTTG
TGTTGATACACTTGCGCGGCTGATCAGCCTGGTATCACTATGTGTTTCTC
ACCCGTCACCGTCACCACCGATTCCCTTGAGACGTTCGCTTATCCCGGTG
ACCACCCTGCAAGATGTCAGTTTGCTATCAAGAATTTGGCGGAATCACGC
GGTCATGTGTTGTAAACAGGCGCAAAAGCTTAACTTTTAAGCCTCAAAAG
GATACCGCTTCGCGCGCGGGCATCGGGAGCATAGGACGCACCATTTCACA
GCTAGCAGTTGCTCGCTACGCACGTCGAAGCAAAGGACACGATCCACCTG
AGAGTGTGCCTATAGCCAAAACCGAAAGACTTTCACCAACTGTAGAATTG
TGATAAACGCATACTCTCTGGAGACAAGATCTTCACTACTACTTCGGAAT
GTGAAGTAATATATAACACGTTACACCATAACTATTAAATACCAAAACAA
TCCGGACAATCAATCCATCTGGGAGACCGAAATCTTCTCCCTTTTTTACC
ACCTCCGCTATATCACGACAAGTCTATTGTTTATGAGTACACAAAATACG
CCGGTTGTGATTCAAAACGCTGGGATTTTTCATTTAAAAAATCTACTCGG
GGTCAGCCTTTTCCTATAACCTGGCCTGATACACGGTGCGTTATTGTGTT
GCAACCCCATTTCTTGGGGCCTAGTCTACAGGGGACGTTGGTCTACTGTC
CCCGGTGGTGTGGTGAATTTAGGTACAGTATATACAAATAATCTTCCACA
GAAGTATTATTAATAGTAGTACTCCGTATTACGTAACCTTTGTTCGATGA
GCGTATACATGCGTTTTTTTTTTACGTGCAACGCTGTTAACGCTCTTCAG
GTGGGGCATCATGCCCGGTCAAGACCGCCTGATAATGGACATCGGACCGT
TGCAAGTGCCGGAGGAAGACGCCGACCGTATCAAGGAGATGCAGATGGCG
GGAATGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig645:417715..419772-

>mRNA_F-serratus_M_contig645.17394.1 ID=mRNA_F-serratus_M_contig645.17394.1|Name=mRNA_F-serratus_M_contig645.17394.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig645:417715..419772- (Fucus serratus male)
TACCGTGCACTTCTCCTGGGCTACGGCAGTACCGTGCACTTCTCCTGGGC
TACGGCAGTGGAGGGGATGCCGACAAGGTTTTGCAGTGTATAGAGGAGGC
GCACATCCTCCGGGGGCATTTCTCGGACCACGTGGGAGACGGCACGCCGA
AGCTGTCGTGGGAGACCTACTGCGTGGCGCTTGAAGCGATCGCCAAGTGC
TGCAGCGTCGACAGACACAGGGGCACTCGACCAAGTGGAGGGGATGCCGA
CAAGGTTTTGCAGTGTATAGAGGAGGCGCACATCCTCCGGGGGCATTTCT
CGGACCACGTGGGAGACGGCACGCCGAAGCTGTCGTGGGAGACCTACTGC
GTGGCGCTTGAAGCGATCGCCAAGTGCTGCAGCGTCGACAGACACAGGGG
CACTCGACCAAGGTGGGGCATCATGCCCGGTCAAGACCGCCTGATAATGG
ACATCGGACCGTTGCAAGTGCCGGAGGAAGACGCCGACCGTATCAAGGAG
ATGCAGATGGCGGGAATGGTGGGGCATCATGCCCGGTCAAGACCGCCTGA
TAATGGACATCGGACCGTTGCAAGTGCCGGAGGAAGACGCCGACCGTATC
AAGGAGATGCAGATGGCGGGAATG
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