mRNA_F-serratus_M_contig645.17390.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig645.17390.1 vs. uniprot
Match: D8LDK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK1_ECTSI) HSP 1 Score: 132 bits (333), Expect = 1.330e-28 Identity = 185/613 (30.18%), Postives = 243/613 (39.64%), Query Frame = 1
Query: 28 ATDDPVAAAKELFGRGEAAEGRVRAALDGEALALRTLTPPVDLCLNPSPIVSRLAALVRDDGNG------------FRFLRRHYRILETLAVPGEEEGPDDEEFFLGYGVKRLGKDVTKRKLIDSQAELSAAFRGCTADQVLECAEASKRARTERRRLAAASLATGNRQAXXXXXXXXSPSGAPTVRTHIS-PSTASRNKPPALGASKGVTAGAGARG----SNSGGSSTGASGVAG---------------------------RDVPSGG-------------------GVSSAVHGTLASADGG-KGA-AAKAGGGALSPKKEPQRVQAAPTT------------GRSAGKEEHGQARKEEAREGSG----MDSDGQKT-VSKKRKEPY-----EGWKLELDAGALTGD------------------------------IGATKPPASEAQVAFDMIHRILLVPVTHVSSANGDRPHPSEKFAKFARVAQDKARVIERKNRKILGQELARAGDGAVDASSIAAQQAGRLTMDAAERQLRNEIEANRLAREQLLQQQQQHRQHRGKVALQVGDSAFAADAKAIITNPDAMMAVRSTNGTPQTDNGKMDLPQP 1515
A P AAA+ +FGRG A + AL EAL L+ L P ++CL PS VSRLA +VR +G FRF R HYR+LETLA+PG E+ PD+E+FFLG G KRLGK TKR +A S A G R P+G H S P+ R P AS G G G S S ++TG G + V GG GV SA +++ G KG AA ++V PT+ G+ E +A+K++A+EG G M +DG +S K E +G + A D + + K E VAF +HR LL PVTH+S ANG RPH F KFA+ A +KA+ I+R N L QELAR D A A++ + Q GRLT+ A E +LR ++ LA EQ + +L G DAKAI T+PDAM+ +R + +P D LP+P
Sbjct: 613 AESSPAAAAQAIFGRGPATD----VALGAEALILQALVPSTEICLEPSVDVSRLATMVRGEGTARADGEGGGGNLTFRFERHHYRLLETLALPGVEDAPDEEQFFLGLGAKRLGKS-TKRSATGDRAAKSPG-------------------------------AGGGRSGVTNYPDETHPNG------HTSNPNGMMRMNTPEASASSGDGGWGGGLGLADRSQSSIAATGGVGATSTAVVGSXXXXXXRRMKGXXSVLLGAPRQQVSQGGLEXXXXXXXXXXXXXXARSGVRSAAEMAVSAVLGWEKGLNAAXXXXXXXXXXXXXKKVVPLPTSKALNNSVGTDKSGKERSDEAKRRAKKQQAKEGPGHPKRMIADGSAAALSTKAAEALINDGMKGLAVHPTPQAPREDXXXXXXXXXXXXXXXXXXXXXXXXXXRKTSVKSKKRLEEERAVAFRTVHRTLLSPVTHLSPANGGRPHDPAVFTKFAKPAVEKAKAIDRNNWNTLAQELARGSDDAA-AAAHDSNQTGRLTVAATEERLRRGLQPAHLAGEQXXXXXXXXXXXXQQDSLVAGREVHDGDAKAIKTSPDAMITLRVSTASPSNDQ----LPRP 1178
BLAST of mRNA_F-serratus_M_contig645.17390.1 vs. uniprot
Match: A0A6H5KXS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS5_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 1.020e-17 Identity = 71/172 (41.28%), Postives = 93/172 (54.07%), Query Frame = 1
Query: 1000 IGATKPPASEAQVAFDMIHRILLVPVTHVSSANGDRPHPSEKFAKFARVAQDKARVIERKNRKILGQELARAGDGAVDASSIAAQQAGRLTMDAAERQLRNEIEANRLAREQLLQQQQQHRQHRGKVALQVGDSAFAADAKAIITNPDAMMAVRSTNGTPQTDNGKMDLPQP 1515
+ + K E VAF +HR LL PVTH+S ANG RPH F KFA+ A +KA+ I+R N L QELAR D A A++ +Q GRLT+ A E +LR ++ LA EQ Q + L G DAKAI T+PDAM+ +R + +P D LP+P
Sbjct: 1215 VKSKKRLEEERAVAFRTVHRTLLSPVTHLSPANGGRPHDPAVFTKFAKPAVEKAKAIDRNNWNTLAQELARGSDDAA-AAAHDGKQTGRLTVAATEERLRRGLQPAYLAGEQQQQXXXXXXXXXQQDPLVTGREVHDGDAKAIKTSPDAMITLRVSTASPSNDQ----LPRP 1381 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig645.17390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig645.17390.1 >prot_F-serratus_M_contig645.17390.1 ID=prot_F-serratus_M_contig645.17390.1|Name=mRNA_F-serratus_M_contig645.17390.1|organism=Fucus serratus male|type=polypeptide|length=594bp KREGAERRRATDDPVAAAKELFGRGEAAEGRVRAALDGEALALRTLTPPVback to top mRNA from alignment at F-serratus_M_contig645:283611..289598+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig645.17390.1 ID=mRNA_F-serratus_M_contig645.17390.1|Name=mRNA_F-serratus_M_contig645.17390.1|organism=Fucus serratus male|type=mRNA|length=5988bp|location=Sequence derived from alignment at F-serratus_M_contig645:283611..289598+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig645:283611..289598+ >mRNA_F-serratus_M_contig645.17390.1 ID=mRNA_F-serratus_M_contig645.17390.1|Name=mRNA_F-serratus_M_contig645.17390.1|organism=Fucus serratus male|type=CDS|length=3564bp|location=Sequence derived from alignment at F-serratus_M_contig645:283611..289598+ (Fucus serratus male)back to top |