mRNA_F-serratus_M_contig645.17386.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig645.17386.1
Unique Name	mRNA_F-serratus_M_contig645.17386.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig645.17386.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig645.17386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig645	contig	F-serratus_M_contig645:264703..272682 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	367
Cds size	366
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931991.0500634-CDS-F-serratus_M_contig645:264702..264966	1622931991.0500634-CDS-F-serratus_M_contig645:264702..264966	Fucus serratus male	CDS	F-serratus_M_contig645 264703..264966 +
1690964092.0952601-CDS-F-serratus_M_contig645:264702..264966	1690964092.0952601-CDS-F-serratus_M_contig645:264702..264966	Fucus serratus male	CDS	F-serratus_M_contig645 264703..264966 +
1622931991.066504-CDS-F-serratus_M_contig645:272579..272681	1622931991.066504-CDS-F-serratus_M_contig645:272579..272681	Fucus serratus male	CDS	F-serratus_M_contig645 272580..272681 +
1690964092.1093822-CDS-F-serratus_M_contig645:272579..272681	1690964092.1093822-CDS-F-serratus_M_contig645:272579..272681	Fucus serratus male	CDS	F-serratus_M_contig645 272580..272681 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig645.17386.1	prot_F-serratus_M_contig645.17386.1	Fucus serratus male	polypeptide	F-serratus_M_contig645 264703..272681 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig645:264703..272682+
coding sequence from alignment at F-serratus_M_contig645:264703..272682+

protein sequence of mRNA_F-serratus_M_contig645.17386.1

>prot_F-serratus_M_contig645.17386.1 ID=prot_F-serratus_M_contig645.17386.1|Name=mRNA_F-serratus_M_contig645.17386.1|organism=Fucus serratus male|type=polypeptide|length=122bp
HGGGIVRADVDTTEAAEQGQASSMPPSPLELAHIITPLTTALARAEAPVD
CAWNGQEKGTSASGIPWQQALGERSPVTSASTKLERPKISFKLPPRASTF
DKGQPSQLALTRKRRRSWAAKT

mRNA from alignment at F-serratus_M_contig645:264703..272682+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig645.17386.1 ID=mRNA_F-serratus_M_contig645.17386.1|Name=mRNA_F-serratus_M_contig645.17386.1|organism=Fucus serratus male|type=mRNA|length=7980bp|location=Sequence derived from alignment at F-serratus_M_contig645:264703..272682+ (Fucus serratus male)
CATGGGGGTGGTATTGTTCGGGCGGATGTGGACACGACCGAAGCCGCAGA
GCAGGGACAAGCTTCATCGATGCCGCCCTCACCCCTGGAGCTAGCGCATA
TCATCACGCCTCTGACGACGGCCCTCGCGCGTGCCGAGGCGCCGGTAGAT
TGCGCCTGGAATGGCCAAGAGAAGGGTACAAGTGCATCTGGAATACCCTG
GCAACAGGCTCTCGGAGAGCGTTCGCCAGTAACGTCGGCATCCACGAAGC
TGGAGCGTCCCAAGGTGCGGAAACCGTTGTAATTTTCAGTATTTTTCTGG
CACACGCCAGAAGACGTATGGTCTCGTGGGAAAATATTTCGAGGCTCGCG
TTGCACCCACCTCGACGTCAGCCATCTCTGCAGTACTGTAGTACAGTAAA
AAAAAATTGTCGGGCATTTGGCTGATGAAAAATCGCCGGGCGTTATGGGG
AAAGGTGCGTACAGACAGTTGGAAGGCATTGTCCACGAGATGTTATGGGC
CGCGCTGGAGAGAACGATGAAACAAGGACAAGGAAGGGCTAATCGTTAAG
ACCACACCATTGTATGGTGGTCAGTATAACCGTTTCGTCGCCCATCAGCC
AATGACGCATGCCCGCTCCACAGCATTACAGTTAGTTCAGGATTGGTTGC
AGCATCATGCAGCCGCTATCGATCTTGGAACGCTCTCCGACATGACGCAC
AGCTGTAGTGAAAGACAATGAAATACATTATTGCGGTGTGTTGGTGGCGA
GAGCGTCCTTACGCCGTCTTTTTTTTATGTCGCGACGTGTCTTCCACGGC
GTACAGTACAGTTAGTGCAGTAGTCTGTCTACAGAGTTGCACACTGGAGT
GCATACGACTAGTATTATAGTAGGGGTATGTATGTCTTGCGACGGCCACC
ACGTCTCCGATTCTGTACCACCATAGTTGGCAGCTACCTGGTATGATTTA
CCATACCAGGTATCATATATTATCATAAACAGGACATAGAGTTATACCAG
GTAAGTATGTGAGTAACCATTATATTCAGCCTGAGTGTAGAGATGATGAG
CAGGCTGAGGCGAGACTGGACGGCTGAATCCCTCTCGCGAGACCAAATAA
TCCTCAGGCGCGAACGGGGACAGGGAAATTTTCATCTTCCCTGATCAGCT
GACCACGAGCAGGATTGGCAACTATACCTAGTTTATCTATTATCTGCTGA
AAGTGCCGACCATACATGTATGTATGGTTTGGTCATCACATATAGCAGAG
TACCAGGTATGGATCAACCGGGCAAGGTTGCCAATCCTTCTCTAATAGTA
ATAGTGGTCAGCTGATCGGGGAAAATGAAAATTCCTCCACTCTGTCCCCG
TACGCGCCTGGAAATTTGCAGTCTTGCGAGACGGCTTCAGCCCTCCCGTC
CCGCGTCAGCCTGCATGCAGGTATGTATAGTCATCGCAGATTGTCGTTGT
TGAATGAAAAATATGAACGTATCTATACCTTCTGAGCATCATCATCTCCC
AGTCAGGGGGGGAAAATGTCAAAACGTTTAGGTGAGATCATCTCACTCTC
GGCGTATTGGTTACCAACCCAAACCGAAAAACTACTTTACACGGTGGCCA
AACCGCTCGAGCCTCGTGGTCATAAGTCTGCTGAACTGGAAGAAAAAAAG
GCTGGCAACGCACCCCCTCCCTTAAACCGGTATGACTACTAGTTGTACCG
TACCCGCAGGTACCGATCTCGATCCGTGGTTAGATATATAGTCTATATTT
TTGTCCCGTCGCCGTTCGCGCCTGATAATGTATTTGGTCAGCAGCTGGCC
ACTCTGAAATGTAATATGCCAGGTATAAAACAAACAGCAGCAGGATAAAA
ACACTTCCTGATACTATTATAATTGAAGATCAATTAATACTGCCTGTACC
TGGTAGATACATAGACTACAGTATAGACTATACAAGCTGGGCTGGCCAAG
AAACTGACTTCTGTTCGTTCATGTCTCGCTCTGCCGTTTCTACGAGTTAA
AGCTTGAAATTTGGAGGCTGCTCCTATACGGCAAAAAGGGAAGCGCAGGC
GCCGGAATTTTTCGAATCCGAGTTGATTTTGGTAAACAATGACCAAATGG
CGGCGTAGTGGAGGATACTTCCTATACTAAAATCAGTATGAAAAAAAGTG
TCACGGATCAAGCTGAAATTTGGTGTACACGTACCCAGGAGCACCGCAAG
AGCGTGGGTGGTAGTTACAAGGCTCGCCTCGTTTTTTATCAAGAGTTGCG
GCCTCGTAAAGATTCCGATACAAAACACAAGTGAACTGAGGAAATGTGGG
GGTATCGCGATTTGCCACGCGGGTTTTACGATTTTTCACCTGAACTTTCG
ACACGTGATTTAGACCGCTCTTGCGGAGAGGACCACCCCTGCACATTTTT
ATTTATTTGAATTCTTCCCATAATTTCGTCGCGAAACAAATATTCCCACA
TCTACTTATATCCGGCTATCATACCATAACTTACGAAAAAAAACTAAAAC
CAAAATGTGCAGGGGTGGTCCTCTCCGCAAGAGCGGTCTAAATCACGTGT
CAAAATTTCTGGTGAAAAATCGTAAAAACCGCGTGGCAAATCCCATTCCG
CCATGTGTACAGCGTCTTGGCCAGCCCAGCCTGTAGAGCTATTTATATTT
GAATTTTATTCCTATTTATTCTAGACGTGAAGTTCGTTGGATGTACAAGC
CGGGGTCACACTGGAGGAGGGTCACACAGGATTCCTCATCCACCTTCCTT
CTGCGGTGCATGCCTTTTTTTTCCCTCGCGAGAAGGATTCAGCCTTTTTT
TTCCCTCGTCGGCCGTGAAGTCGAATTTTCGTGGACTAACGATAAAGACT
AATCGTTCTCCACTCGTTGGGCATTTTTATTTTTTAGTGAGGAAAAATCC
CAGTTAACCGGGATTCGAACTCACGTCCCAAGGTGTCAGAAGTTAATAGA
AGGTTACGCCAGGTTACCAACTGAGCTATCATATTATACAGGGGCGACCG
GCAATATTCATATGAGGCACCCTCGTGCCCTCTCTCCCTCCGAAGCCTGG
TTTCGGGGTATGAGTGTGGGAGGGTCTTTCCGGCGGGTGTAGGGCCGGAC
TCACCCTCAAGAGGTGCAGCCAACTGGCTGCCTTCGCGATTCAGCCTGTA
GGTTGGGACGCGGCGGCGGTATGGTTGGCTGAAGATGATGGTGTTCCCAG
GTGTGCGCCTCTTCCGAGCCTCAATTTGGTGGCTTTCGGGAGGGTGGCGG
CACGCGAGAGGCAGGAGCACTGTCGCGGAGAGCCTGGTAGTGCTCTACCG
AGTGGGTACGCACCAGATTTGGCGAAGGCGGAGGGCAGCTCGATCGTTGA
CGAGCCAGGGGAGGGCCGAACCCCTGTGCGCGAGAATCACAGGCGCGAAC
CGGGAGGTTTCTCAGGAAAAGCTGACATCTGACCACACGGTTATTTGTCT
TCCTACGAGGGCCATAAGGAGCGGCGAACGGGCAAGATTCGTGGGACTTT
TCCAGGGATGCACAGGGCTTCGGACGGCTGGATACTGGCTCGCGCGCCGG
CCTCACCAGCTCAAGGCCTCCACCACCATGGACCTCGGTGATTCAATTTT
TCTTATTTCTGTAGATTGAGTGGCCTTGAGAAACTTGGAATTTTGTTGAT
CAAAACTGGTTGGAGCGTAATTCTTCCGGTTTTTGCTGAGAACGCTGGTC
GTGGGTAGGCGATAACAATCCGAGTCGATCGAGATTGCTCTCGATATGGA
GTAAGGATGTTTGATGAACCGTTTTGTTTGGTCGGTGCCATTACTTGTAG
AGTCGCATAACTTTTTGTCGCGATTTGGATCCCTATTGGTCTGAGTAGCG
GGTTGTTACCATGATGTGCCCCGTTGACCTTTGTACCTCTTTGTGACCAC
GTACCGGATTGGCAACCGCGTACATTACTAGGTATGGTTGAGGCCCGATC
GGTTAATGTGAAGAATACTACTACTACTACTACTACTACCAGTACAAAAG
TACAGCAACAGGTACAGCTGTAGTATGATATGCCTGGTACATTATAAATA
GTTTATACAGATAGTCTAATCGGGGAGCTTTACGCCATTCTTGTACCGTA
GTCTAAACTTTTACAGCCGTAAATAGACCATTTCCCTCAGACGAAGCAGA
AAGTCCATCCCTTGCTGTGACATCCTGTGCTAACTATTAATATTAATAAC
GGTACAACCTTACTCACTCTATCTGTATTACGGTGTACCGACTGTATGCA
AATTAAATAAGCGTCATACTTGTACGGTACACTCAGCACAGGACAGTAAT
TTTACCGCAACCCACTTTCGAAAAAATAAAATATCGAGAGGGGTGCCACA
TACTATGCATAGCTGTTGTACCGATCATATTTTTACGCTAAGGCCATCTT
TACACGTATCGTATTTGGATCTGGAATATTATTGTATTTGGTGCTTATCG
TATTTGGAATATTTGCGGAGCTCAAATCCAACAGGTCTATTTACACGTAC
ATAGAGGTTTGCAACGATTTGAAATGCGTGTGTGCATTTTCTGGCCGTCT
GCTTTCAAAATATATAAATGCATCGCACGCGCCTCGCCAACAGGTAGCAG
CACGGCAACTTGAGAGTGGACCATTATAAAATAGGGGGACCATCGCCATC
GTGGCCGAGTCTCTGTTTTTCGCGAAGGACGAGAGGTTACAACAACACAA
CACTCGAGTATTTCTTGTACCATTTCCGCTTTCTCTTTGTATGGAGAGTA
CGTCGTACGTTCTTTCCTTCCGAATGGTGTTTTCTACCTCGTGACCACGG
GCTGGGTTTTTTGACATCAGCTTATGTGAGAATTCAATCAATCAATCAAT
CAACACTCGTCCTTCAGCTTGAAATCAAATACACGTGTTGTACTGGACTG
TCTGCACAGGCGAGTATAGACTATCTATATTACAGCATGTACAGTCTACT
GTATTACAGTACTGGTATAGTACAGTCTACTGTATTACAGTATAGTACAG
TCTACTGTATGTAGTACAGTACGGTCTTCTGTCTGTACTGGAGTCATCTC
GAACCCAAAGATACACATCGCATTTTTAGCAGAAATGTGGCAACAACTTT
CCCTGTCCTTCAGCACTACAGGTAGACACTGCCTCCATGACACGTCCCTC
GGACTCGCCGAGTACGCTTGACTCGGGGAATCATCACCATCCTCGCTCTA
TTTTTCCTACGACGTCTCCATGTCCTCTAGCCCGTCCAAAATCACAGCCT
ACACGGCCAAGGTTCTGGCTCGTCGCCGTTTCTCGTAGGTTAAGAACACA
GCCAAAGCTACAGCGAGCGCTCCCCAGAGGCGTTCATCGCGGTCGTCCGA
CGCGATCAGAGCAACCGACGCGTTGTGTAGATGCTCAAAGTGCTGTGTGC
CGAGGACAGACCTCTCTGCCTCGATGGGAGCTCAACGTGTGCTGGGTTTA
CAGCTATGCTAGATGGTAAATTCGTACTTTCAAATGCACACGCCTACACG
TCAAGTCGAACCCCGCAAATACGATCGTCCTCGGCTCCATCGTATTTGGG
TCCCAAATACGATGGAGCCGAGGGAAAAAAACGAATATCGTATTTGAGAT
TATCGTATTTGGCCAAATACGATGCGTGTAAATAGGCATATTGGATTTGA
GGTCCCCAAATTCCCAGATCCAATTCCTATATTCCCCAAATACGATACGT
GTAAAGATGGCCTAACAAAACCCGTTTAATTGCCATGAAGAGGTTTTGTA
TTTGCAGCCTTTGATCCCACCTAAACGTTTTGACATTTTTTCTTCTGACT
GGAGGATGCTCAGAAGGTATAGGCGCGTTCTGGTTTTTCTTTAAACAATA
ATTACCAGGGAATGATGAAGAAGGCACGAGATACACAGCAGTGCAGTCGC
CTCGGTAGCTCAGAGGTAACCTCGTAACCTTCTGACACGTTGGGACTTGA
GTTCGATCCCGGCGAACGGGATTTTTCTCACTCACTAAAAAACTAAACTA
AAAATGTCCAACGAGTGGAGAACGATTAAATCGTTTGTACACAAAATTCA
AAATTCGACTTCACGGTCGACGAGGGAAAGAAAAGAAATGGCTGAATCCT
TCTCGCGATAAAAGTGAAGGTACGCACCGTAGAAGGGAGATGAAATGGTA
ACCCCTATTTGCAGTTTAACACTGCAAATAGCGGCGTGCAGTTTAACTAC
CGCCTCCAGAACCACACACCTTCAGAAACCCTTTTTGAAACACATGCTAT
CGCTATCGCTAACTTTAACCCAGACCCCCTAcCCTAGCTGACTGCGAGGT
CCCAATTCAACACACATGCTATCGCTAACCCTAACCCAGACCCCCCTACC
CCAGCTGACTGCGAGGTcCCAATTCATGGCTGGGTCCACTCATGTCCCGT
CTGCGAAAAATGAAAAATTCTAACGCTATCGCTAACCCTAACCCAGACCA
AGGATAAAGAAATTACTCGACGCTGGGGCTAGAACAGCGAGACTTCTTAT
GCATCGATAGCAATTACCGACTATTCTACTACGCTGTGACCAGAAAACTC
TCGTATTGTTTTGTTTCTAAATTATAAAATAATACCAAAAAGGGGACGCT
GCCGGCGAATATTCCGGGGTTCTCACTGGAGGCGGTAGTTAAACTGCACG
CCGCTAAACTGCAAATAGGGGCTACCGAGATGAGATGGAAGAGAGATCCC
GTGTGACCCCGGCTGGTGTGTCCAACGAACTTGATGTCCAGAATGAATGA
GAAGAAAATACACACACACACACACATTGCGCGGTTATGTGCAATTTAAT
ACATACACACACACCCCACTCCCCCCTCGGGAGGATCAATGCGAGTATTA
ATATTAATAGCATAAAATGACTATTAATAGGATGACAGGGCCGGATTGCG
CGGTTATGTGCCATTTAATAATTTCACACACACACACACACACTGTAGAA
AAGAAAGGGTCGGTCCAGTAGCTGCCAACTCAAATGTTGTAGAGAGTAAC
AAGGAAGCAGGGGGGGGAGCACAAGGAACTCTGAGCTTAAGTAAGAATTG
TACAAGTAGAGAGAGCGTGTCCCCTTTGTCGCGTCTGATCAGAGGTTTTC
GTAATAAGTATCATTGATCCCCCCTCGGGAGGATCAATAGTGGCATAGAA
TGGCTAGGATGAAAGGGCCGGATTGCGTGGTTATGTGCAATTTAATAAAT
ATACACACACACACACACACACACACACACACACACACACACACACACAC
TTTCGTAATAAGTATCATTGATCCCCCTCGGGAGGATCAATGCGAGTGGC
ATAGAATGGCTAGGATGAAAGGGCCGGATTGCGTGGTTATGTGCAATTTA
ATAAATACACACACACACACACACACACACACTTTCGTAATAAGTATCAT
TGATCCCCCCTCGGGAGGATCAATGCGAGTGGCATAGAATGACTAGGATA
ACAGGGCCGGATTGCGTGGTTATGTGCAATTTAATAAATATACACACACA
CACACACACACATTGTAGCATACACAGCTGTATTGATAGTACGATACACA
CGAGAAACCTGTACAGACTAGGAGTAGGGGTCTGTTGCCTTATTCATGGA
AGCCTGGGGAGCGACCGCATGCTGTTAAGCAACGCCCTTGGTGTCTGTCT
CCCTCACGATGCTGCCCCCAGTAACGGTTAAGATTAAGAGGATTGAAAAC
ATCGCTCTCCTACCAAGAAAAAGCTGTATAGGCAGCAATGCGGTTACGTT
GCCCGCACCGCTCTCCCACTAACCTCCAAAGAGCTAACCCTAGCCCTCTC
ATCCCCTTGCTCAACCATCATACCCCCCCGTTTCCCCGCAATGTGCACTT
TCCAAATGCCGCGACTGGTGGAAAAAGATATCCTTCAAGCTTCCGCCTCG
AGCTTCAACCTTCGACAAGGGTCAGCCATCCCAGCTAGCGCTGACCCGCA
AGCGTCGCAGGAGCTGGGCGGCGAAAACGC

Coding sequence (CDS) from alignment at F-serratus_M_contig645:264703..272682+

>mRNA_F-serratus_M_contig645.17386.1 ID=mRNA_F-serratus_M_contig645.17386.1|Name=mRNA_F-serratus_M_contig645.17386.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig645:264703..272682+ (Fucus serratus male)
CATGGGGGTGGTATTGTTCGGGCGGATGTGGACACGACCGAAGCCGCAGA
GCAGGGACAAGCTTCATCGATGCCGCCCTCACCCCTGGAGCTAGCGCATA
TCATCACGCCTCTGACGACGGCCCTCGCGCGTGCCGAGGCGCCGGTAGAT
TGCGCCTGGAATGGCCAAGAGAAGGGTACAAGTGCATCTGGAATACCCTG
GCAACAGGCTCTCGGAGAGCGTTCGCCAGTAACGTCGGCATCCACGAAGC
TGGAGCGTCCCAAGCATGGGGGTGGTATTGTTCGGGCGGATGTGGACACG
ACCGAAGCCGCAGAGCAGGGACAAGCTTCATCGATGCCGCCCTCACCCCT
GGAGCTAGCGCATATCATCACGCCTCTGACGACGGCCCTCGCGCGTGCCG
AGGCGCCGGTAGATTGCGCCTGGAATGGCCAAGAGAAGGGTACAAGTGCA
TCTGGAATACCCTGGCAACAGGCTCTCGGAGAGCGTTCGCCAGTAACGTC
GGCATCCACGAAGCTGGAGCGTCCCAAGATATCCTTCAAGCTTCCGCCTC
GAGCTTCAACCTTCGACAAGGGTCAGCCATCCCAGCTAGCGCTGACCCGC
AAGCGTCGCAGGAGCTGGGCGGCGAAAACGATATCCTTCAAGCTTCCGCC
TCGAGCTTCAACCTTCGACAAGGGTCAGCCATCCCAGCTAGCGCTGACCC
GCAAGCGTCGCAGGAGCTGGGCGGCGAAAACG