mRNA_F-serratus_M_contig6449.17383.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6449.17383.1
Unique NamemRNA_F-serratus_M_contig6449.17383.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6449.17383.1 vs. uniprot
Match: G4Z768_PHYSP (UBC core domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z768_PHYSP)

HSP 1 Score: 83.2 bits (204), Expect = 9.080e-20
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 ERYHEAFQPLQHLFVLFSQAAPLESNILEWHYVITGTKGSPYEGGFYHGKLKFPPE 168
            +R  + +  +Q   V + + APLE NILEWHYVITGTKG+PYEGGFYHGKLKFPPE
Sbjct:    4 KRLRKEYLAMQRKPVDYIRVAPLEKNILEWHYVITGTKGTPYEGGFYHGKLKFPPE 59
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BLAST of mRNA_F-serratus_M_contig6449.17383.1 vs. uniprot
Match: W2KBB3_PHYPR (UBC core domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2KBB3_PHYPR)

HSP 1 Score: 85.1 bits (209), Expect = 5.280e-19
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 ERYHEAFQPLQHLFVLFSQAAPLESNILEWHYVITGTKGSPYEGGFYHGKLKFPPE 168
            +R  + +  +Q   V + QA PLE+NILEWHYVITGTKG+PYEGGFYHGKLKFPPE
Sbjct:    8 KRLRKEYLAMQRKPVDYIQAVPLETNILEWHYVITGTKGTPYEGGFYHGKLKFPPE 63
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BLAST of mRNA_F-serratus_M_contig6449.17383.1 vs. uniprot
Match: A0A484E228_BRELC (UBC core domain-containing protein n=2 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E228_BRELC)

HSP 1 Score: 84.3 bits (207), Expect = 1.070e-18
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 ERYHEAFQPLQHLFVLFSQAAPLESNILEWHYVITGTKGSPYEGGFYHGKLKFPPE 168
            +R  + +  +Q   V + QA PLE+NILEWHYVITGT GSPYEGGFYHGKLKFPPE
Sbjct:    8 KRLRKEYLAMQRKPVEYIQAVPLETNILEWHYVITGTTGSPYEGGFYHGKLKFPPE 63
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BLAST of mRNA_F-serratus_M_contig6449.17383.1 vs. uniprot
Match: A0A0P1AWA5_PLAHL (Ubiquitin-conjugating enzyme e2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWA5_PLAHL)

HSP 1 Score: 84.0 bits (206), Expect = 1.370e-18
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 ERYHEAFQPLQHLFVLFSQAAPLESNILEWHYVITGTKGSPYEGGFYHGKLKFPPE 168
            +R  + +  +Q   V + QA PLE+NILEWHYVITGTKG+PYEGGFYHG+LKFPPE
Sbjct:    4 KRLRKEYLSMQRKPVDYIQAVPLETNILEWHYVITGTKGTPYEGGFYHGRLKFPPE 59
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BLAST of mRNA_F-serratus_M_contig6449.17383.1 vs. uniprot
Match: D0NAC0_PHYIT (Ubiquitin-conjugating enzyme E2 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NAC0_PHYIT)

HSP 1 Score: 82.0 bits (201), Expect = 3.130e-18
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 ERYHEAFQPLQHLFVLFSQAAPLESNILEWHYVITGTKGSPYEGGFYHGKLKFPPE 168
            +R  + +  LQ   V   +AAPLE+NILEWHYVITGT+G+PYEGGFYHGKLKFPPE
Sbjct:    4 KRLRKEYVALQRNPVENIRAAPLENNILEWHYVITGTEGTPYEGGFYHGKLKFPPE 59
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BLAST of mRNA_F-serratus_M_contig6449.17383.1 vs. uniprot
Match: A0A3F2RXI9_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXI9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.260e-18
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 ERYHEAFQPLQHLFVLFSQAAPLESNILEWHYVITGTKGSPYEGGFYHGKLKFPPE 168
            +R  + +  +Q   V + QA P+E+NILEWHYVITGTKG+PYEGG+YHGKLKFPPE
Sbjct:    8 KRLRKEYLAMQRKPVDYIQAVPVETNILEWHYVITGTKGTPYEGGYYHGKLKFPPE 63
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BLAST of mRNA_F-serratus_M_contig6449.17383.1 vs. uniprot
Match: H3GEL4_PHYRM (UBC core domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GEL4_PHYRM)

HSP 1 Score: 82.8 bits (203), Expect = 4.260e-18
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 ERYHEAFQPLQHLFVLFSQAAPLESNILEWHYVITGTKGSPYEGGFYHGKLKFPPE 168
            +R  + +  +Q   V + QA P+E+NILEWHYVITGTKG+PYEGG+YHGKLKFPPE
Sbjct:    8 KRLRKEYLSMQRKPVDYIQAVPVETNILEWHYVITGTKGTPYEGGYYHGKLKFPPE 63
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BLAST of mRNA_F-serratus_M_contig6449.17383.1 vs. uniprot
Match: W2FYI4_PHYPR (UBC core domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2FYI4_PHYPR)

HSP 1 Score: 81.6 bits (200), Expect = 4.520e-18
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 ERYHEAFQPLQHLFVLFSQAAPLESNILEWHYVITGTKGSPYEGGFYHGKLKFPPE 168
            +R  + +  LQ   V   +AAPLE NILEWHYVITGT+G+PYEGGFYHGKLKFPPE
Sbjct:    8 KRLRKEYLALQRNPVENIRAAPLEKNILEWHYVITGTEGTPYEGGFYHGKLKFPPE 63
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BLAST of mRNA_F-serratus_M_contig6449.17383.1 vs. uniprot
Match: A0A3R7J076_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J076_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.510e-18
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 ERYHEAFQPLQHLFVLFSQAAPLESNILEWHYVITGTKGSPYEGGFYHGKLKFPPE 168
            +R  + +  LQ   V   +AAPLE NILEWHYVITGT+G+PYEGGFYHGKLKFPPE
Sbjct:    8 KRLRKEYLALQRNPVENIRAAPLEKNILEWHYVITGTEGTPYEGGFYHGKLKFPPE 63
[Close]
BLAST of mRNA_F-serratus_M_contig6449.17383.1 vs. uniprot
Match: A0A662YEQ8_9STRA (UBC core domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEQ8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.280e-17
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   58 AAPLESNILEWHYVITGTKGSPYEGGFYHGKLKFPPE 168
            AAPLE NILEWHYVI+GT+G+PYEGGFYHGKLKFPPE
Sbjct:   27 AAPLEKNILEWHYVISGTEGTPYEGGFYHGKLKFPPE 63
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6449.17383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G4Z768_PHYSP9.080e-2066.07UBC core domain-containing protein n=1 Tax=Phytoph... [more]
W2KBB3_PHYPR5.280e-1967.86UBC core domain-containing protein n=12 Tax=Phytop... [more]
A0A484E228_BRELC1.070e-1867.86UBC core domain-containing protein n=2 Tax=Bremia ... [more]
A0A0P1AWA5_PLAHL1.370e-1866.07Ubiquitin-conjugating enzyme e2 n=1 Tax=Plasmopara... [more]
D0NAC0_PHYIT3.130e-1867.86Ubiquitin-conjugating enzyme E2 n=2 Tax=Phytophtho... [more]
A0A3F2RXI9_9STRA4.260e-1864.29UBC core domain-containing protein n=3 Tax=Phytoph... [more]
H3GEL4_PHYRM4.260e-1864.29UBC core domain-containing protein n=6 Tax=Phytoph... [more]
W2FYI4_PHYPR4.520e-1867.86UBC core domain-containing protein n=10 Tax=Phytop... [more]
A0A3R7J076_9STRA7.510e-1867.86UBC core domain-containing protein n=3 Tax=Phytoph... [more]
A0A662YEQ8_9STRA1.280e-1789.19UBC core domain-containing protein n=1 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6449contigF-serratus_M_contig6449:12388..12555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.5e-14
Seed eggNOG ortholog4787.PITG_08328T0
KEGG koko:K04554
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Ubiquitin-conjugating enzyme E2, catalytic domain homologues
EggNOG OGs3Q81I@4776,KOG0894@1,KOG0894@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931990.9148552-CDS-F-serratus_M_contig6449:12387..125551622931990.9148552-CDS-F-serratus_M_contig6449:12387..12555Fucus serratus maleCDSF-serratus_M_contig6449 12388..12555 -
1690964092.0318706-CDS-F-serratus_M_contig6449:12387..125551690964092.0318706-CDS-F-serratus_M_contig6449:12387..12555Fucus serratus maleCDSF-serratus_M_contig6449 12388..12555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6449.17383.1prot_F-serratus_M_contig6449.17383.1Fucus serratus malepolypeptideF-serratus_M_contig6449 12388..12555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6449.17383.1

>prot_F-serratus_M_contig6449.17383.1 ID=prot_F-serratus_M_contig6449.17383.1|Name=mRNA_F-serratus_M_contig6449.17383.1|organism=Fucus serratus male|type=polypeptide|length=56bp
ERYHEAFQPLQHLFVLFSQAAPLESNILEWHYVITGTKGSPYEGGFYHGK
LKFPPE
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mRNA from alignment at F-serratus_M_contig6449:12388..12555-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6449.17383.1 ID=mRNA_F-serratus_M_contig6449.17383.1|Name=mRNA_F-serratus_M_contig6449.17383.1|organism=Fucus serratus male|type=mRNA|length=168bp|location=Sequence derived from alignment at F-serratus_M_contig6449:12388..12555- (Fucus serratus male)
GAGAGATACCACGAAGCGTTTCAGCCGTTACAGCATTTATTTGTCCTTTT
TTCACAGGCGGCCCCCCTCGAGTCGAACATCTTGGAGTGGCATTACGTCA
TCACAGGCACGAAGGGTTCACCCTATGAAGGAGGGTTCTACCACGGAAAG
CTTAAGTTCCCCCCTGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6449:12388..12555-

>mRNA_F-serratus_M_contig6449.17383.1 ID=mRNA_F-serratus_M_contig6449.17383.1|Name=mRNA_F-serratus_M_contig6449.17383.1|organism=Fucus serratus male|type=CDS|length=336bp|location=Sequence derived from alignment at F-serratus_M_contig6449:12388..12555- (Fucus serratus male)
GAGAGATACCACGAAGCGTTTCAGCCGTTACAGCATTTATTTGTCCTTTT
TTCACAGGCGGCCCCCCTCGAGTCGAACATCTTGGAGTGGCATTACGTCA
TCACAGGCACGAAGGGTTCACCCTATGAAGGAGGGTTCTACCACGGAAAG
CTTAAGTTCCCCCCTGAGGAGAGATACCACGAAGCGTTTCAGCCGTTACA
GCATTTATTTGTCCTTTTTTCACAGGCGGCCCCCCTCGAGTCGAACATCT
TGGAGTGGCATTACGTCATCACAGGCACGAAGGGTTCACCCTATGAAGGA
GGGTTCTACCACGGAAAGCTTAAGTTCCCCCCTGAG
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