mRNA_F-serratus_M_contig6447.17381.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6447.17381.1
Unique NamemRNA_F-serratus_M_contig6447.17381.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6447.17381.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 8.690e-23
Identity = 53/102 (51.96%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:   31 ERILPTMRHFHAEVEVTLTCTRCAYSRRRRELYRDFSLDVPHHS-------------------------EGGAEKEMGLSELLDGFFKPSVLKLRCELCDND 261
            ER++PT RHFHAEVE TLTCT+C+YSRRRRELYRDFSLDVP  +                         +GG     GL +LLD FF+PS L LRCE C +D
Sbjct:  638 ERLMPTTRHFHAEVEATLTCTKCSYSRRRRELYRDFSLDVPEPARRXXXXXXXXXXXXXXXXXXXXXXXDGGVS---GLGDLLDSFFQPSELSLRCERCGHD 736
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BLAST of mRNA_F-serratus_M_contig6447.17381.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.200e-22
Identity = 52/100 (52.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:   31 ERILPTMRHFHAEVEVTLTCTRCAYSRRRRELYRDFSLDVPHHS-----------------------EGGAEKEMGLSELLDGFFKPSVLKLRCELCDND 261
            ER++PT RHFHAEVE TLTCT+C+YSRRRRELYRDFSLDVP  +                       +GG  +   L +LLD FF+PS L LRCE C +D
Sbjct:  738 ERLMPTTRHFHAEVEATLTCTKCSYSRRRRELYRDFSLDVPEPARRXXXXXXXXXXXXXXXXXXXXXDGGVSE---LGDLLDNFFQPSELSLRCERCGHD 834
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BLAST of mRNA_F-serratus_M_contig6447.17381.1 vs. uniprot
Match: A0A7S0K999_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0K999_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.350e-10
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:   37 ILPTMRHFHAEVEVTLTCTRCAYSRRRRELYRDFSLDVPHHSEGGAEKEMGLSELLDGFFKPSVLKLRCELC 252
            + PT R+F  EVEV+LTC  C Y+R R+ELYR  SLDV  +S   +  E G+      FF P  L L+CE C
Sbjct:  373 LFPTQRNFATEVEVSLTCCSCMYTRTRKELYRHLSLDVVGNSSSPSVIEDGIRR----FFSPQKLCLKCEKC 440
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BLAST of mRNA_F-serratus_M_contig6447.17381.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.030e-9
Identity = 37/85 (43.53%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:   37 ILPTMRHFHAEVEVTLTCTRCAYSRRRRELYRDFSLDVPHHSEGGAEK-----------EMGLSELLDGFFKPSVLKLRCELCDN 258
            +LP+ R FHAEV+++L C  C Y+RRR E Y DFSLDV     GG+              + LS LL  FF    L+L CE CD+
Sbjct:  618 LLPSARAFHAEVDMSLRCRGCGYTRRRPEPYMDFSLDVV--GGGGSXXXXXXXXXXXXXSVPLSRLLARFFARRKLELSCERCDD 700
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BLAST of mRNA_F-serratus_M_contig6447.17381.1 vs. uniprot
Match: A0A139AWQ4_GONPJ (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AWQ4_GONPJ)

HSP 1 Score: 56.2 bits (134), Expect = 3.140e-7
Identity = 27/75 (36.00%), Postives = 40/75 (53.33%), Query Frame = 1 
Query:   43 PTMRHFHAEVEVTLTCTRCAYSRRRRELYRDFSLDVPHHSEGGAEKEMGLS--ELLDGFFKPSVLKLRCELCDND 261
            P + +F  E E  L+C  C   RR++E++RD SLD+P          +G+S   LL  FFK   L  +CE C ++
Sbjct:  519 PVVENFEWEAETVLSCAECGLERRKKEVFRDISLDLPQFKFTRTRNGIGISIRHLLHLFFKVETLYYKCETCPSE 593
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BLAST of mRNA_F-serratus_M_contig6447.17381.1 vs. uniprot
Match: W2NL18_PHYPR (Ubiquitin carboxyl-terminal hydrolase n=7 Tax=Phytophthora TaxID=4783 RepID=W2NL18_PHYPR)

HSP 1 Score: 54.3 bits (129), Expect = 1.500e-6
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   13 SRKASLERI--LPTMRHFHAEVEVTLTCTRCAYSRRRRELYRDFSLDVPHHS----EGGAEKE 183
            S  A LE I  LP  + F AE+  TLTC +C YSR++ E + DFSLD+P+HS    E  AE+E
Sbjct:  547 SSNAELELICRLPPAKCFRAELNRTLTCRKCGYSRKKAETFYDFSLDLPYHSIPAPEPTAEQE 609
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BLAST of mRNA_F-serratus_M_contig6447.17381.1 vs. uniprot
Match: A0A329SZM9_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SZM9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.800e-6
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   13 SRKASLERI--LPTMRHFHAEVEVTLTCTRCAYSRRRRELYRDFSLDVPHHS----EGGAEKE 183
            S  A LE I  LP  + F AE+  TLTC +C YSR++ E + DFSLD+P+HS    E  AE+E
Sbjct:  546 SSDAELELICRLPPAKCFRAELNRTLTCRKCGYSRKQAETFYDFSLDLPYHSIPEPEPTAEQE 608
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BLAST of mRNA_F-serratus_M_contig6447.17381.1 vs. uniprot
Match: D0N312_PHYIT (Ubiquitin-specific protease, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N312_PHYIT)

HSP 1 Score: 49.7 bits (117), Expect = 6.360e-5
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   40 LPTMRHFHAEVEVTLTCTRCAYSRRRRELYRDFSLDVPHHS----EGGAEKE 183
            LP  + F AE+  TLTC RC YSR++ E + DFSLD+P+++    E  AE+E
Sbjct:  556 LPPAKCFRAELNRTLTCRRCGYSRKQAETFYDFSLDLPYYATPEPEPTAEQE 607
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BLAST of mRNA_F-serratus_M_contig6447.17381.1 vs. uniprot
Match: A0A3M6VLP5_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VLP5_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 8.810e-5
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    4 DSLSRKASLERI--LPTMRHFHAEVEVTLTCTRCAYSRRRRELYRDFSLDVPHH----SEGGAEKE 183
            ++ S +A +E I  LP  + F AE+  TLTC  C YSR++ E + DFSLD+P++     E  AE+E
Sbjct:  545 ENKSAEAEMELICRLPPAKCFRAELNRTLTCRHCGYSRKQAETFYDFSLDLPYYPFPDQEPTAEQE 610
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6447.17381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G2P5_ECTSI8.690e-2351.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUE2_9PHAE2.200e-2252.00USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S0K999_9STRA2.350e-1047.22Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lept... [more]
A0A835YKZ9_9STRA4.030e-943.53USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A139AWQ4_GONPJ3.140e-736.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Gona... [more]
W2NL18_PHYPR1.500e-649.21Ubiquitin carboxyl-terminal hydrolase n=7 Tax=Phyt... [more]
A0A329SZM9_9STRA2.800e-649.21Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phyt... [more]
D0N312_PHYIT6.360e-548.08Ubiquitin-specific protease, putative n=2 Tax=Phyt... [more]
A0A3M6VLP5_9STRA8.810e-542.42Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6447contigF-serratus_M_contig6447:28932..30049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog2880.D7G2P5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2EX8U@1,2SYYR@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size262
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6447.17381.1prot_F-serratus_M_contig6447.17381.1Fucus serratus malepolypeptideF-serratus_M_contig6447 28932..30049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931990.2052755-CDS-F-serratus_M_contig6447:28931..290061622931990.2052755-CDS-F-serratus_M_contig6447:28931..29006Fucus serratus maleCDSF-serratus_M_contig6447 28932..29006 +
1690964091.8493245-CDS-F-serratus_M_contig6447:28931..290061690964091.8493245-CDS-F-serratus_M_contig6447:28931..29006Fucus serratus maleCDSF-serratus_M_contig6447 28932..29006 +
1622931990.2239952-CDS-F-serratus_M_contig6447:29244..293941622931990.2239952-CDS-F-serratus_M_contig6447:29244..29394Fucus serratus maleCDSF-serratus_M_contig6447 29245..29394 +
1690964091.8625321-CDS-F-serratus_M_contig6447:29244..293941690964091.8625321-CDS-F-serratus_M_contig6447:29244..29394Fucus serratus maleCDSF-serratus_M_contig6447 29245..29394 +
1622931990.2420497-CDS-F-serratus_M_contig6447:30013..300491622931990.2420497-CDS-F-serratus_M_contig6447:30013..30049Fucus serratus maleCDSF-serratus_M_contig6447 30014..30049 +
1690964091.8725858-CDS-F-serratus_M_contig6447:30013..300491690964091.8725858-CDS-F-serratus_M_contig6447:30013..30049Fucus serratus maleCDSF-serratus_M_contig6447 30014..30049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6447.17381.1

>prot_F-serratus_M_contig6447.17381.1 ID=prot_F-serratus_M_contig6447.17381.1|Name=mRNA_F-serratus_M_contig6447.17381.1|organism=Fucus serratus male|type=polypeptide|length=87bp
ADSLSRKASLERILPTMRHFHAEVEVTLTCTRCAYSRRRRELYRDFSLDV
PHHSEGGAEKEMGLSELLDGFFKPSVLKLRCELCDND
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mRNA from alignment at F-serratus_M_contig6447:28932..30049+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6447.17381.1 ID=mRNA_F-serratus_M_contig6447.17381.1|Name=mRNA_F-serratus_M_contig6447.17381.1|organism=Fucus serratus male|type=mRNA|length=1118bp|location=Sequence derived from alignment at F-serratus_M_contig6447:28932..30049+ (Fucus serratus male)
GCTGATTCCTTGAGCAGGAAGGCGTCATTGGAGCGGATTTTGCCGACGAT
GAGGCACTTTCACGCTGAGGTAGAGGTAAGAGACACATACTCCCACGCTA
TACTGAGGAGGTATGGAGGGGGAGGGAGGGGTTGATAAAGTTTTGTGTGA
GGGTGGGCGCGAGCAAAACAAAATCCAGTAAAGCAAGGTCTTTTTTTTGC
CCTTCTGTATTCTAGGGTTGACGCAGCACTCCGCTGCGCGTTCAGTTATT
ATCTGCCCGTGGATACTCACCGGCATCCCGGCGTTCTTTTTCTGGCGACG
CGCTTTGTCACAGGTGACCCTCACCTGCACGCGATGCGCTTACTCCAGGC
GGCGTCGGGAGCTGTACCGCGATTTTTCCCTCGACGTCCCACACCATTCG
GAGGGGGGAGCGGAGAAAGAGATGGGGCTTAGCGAGCTCCTTGACGGCTT
CTTCAAGCCTTCAGTATGTGGCGAATTGGAGTTTTTTCGTGTGGTTGTTA
CAGAACTGTATTTAAGTATAGTAGCGCTCCCCCGAGCCATGGCGATTAGG
CTCGGCGCCACCTGAACCGAACAAAAGCGTTCAGCGCTTAACACTAATAT
TTTTCATCGGTTTGATGGTTCTAAATACCCCTTTCCTATGCAAACGAAAA
TAGAAACTTGTTCCCCTGCTACTTCTCTTCTACCTATGTCATTCTCCTCC
TACGCTCATACGTAACGGGAGATAAGACACCACGGTAGGGTGGGCTTGCT
TTATTGGCGAAGCTTCACTCCCATCTAGAGTTAGCGTCTGACGCCAACTA
TGGCATGTTTCCTTTTGAAAATATTTGCGTTTCGTCCCCTAAACCCCGTC
AACAGTAAGAAAAACATTTTGAAGAAGCACGCATTTTTTTACTTGAACTC
TTTCCGTAGCCTTGAAACGAAAGCACTCTCCAAACTAGTATACGCGTGCT
TTGTGAAGTCAGACCTTATTCTCATTACTTCCCCCTTTCGCAATTGTCGG
AAACGCGTGTAACCACGACTTTTACTGTTTGTATATCTCTAACAAACTCT
TGGTGATAAAATCTTTGTAATTGTTTTTGCAGGTGCTGAAACTTCGCTGC
GAGCTGTGCGACAACGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6447:28932..30049+

>mRNA_F-serratus_M_contig6447.17381.1 ID=mRNA_F-serratus_M_contig6447.17381.1|Name=mRNA_F-serratus_M_contig6447.17381.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig6447:28932..30049+ (Fucus serratus male)
GCTGATTCCTTGAGCAGGAAGGCGTCATTGGAGCGGATTTTGCCGACGAT
GAGGCACTTTCACGCTGAGGTAGAGGCTGATTCCTTGAGCAGGAAGGCGT
CATTGGAGCGGATTTTGCCGACGATGAGGCACTTTCACGCTGAGGTAGAG
GTGACCCTCACCTGCACGCGATGCGCTTACTCCAGGCGGCGTCGGGAGCT
GTACCGCGATTTTTCCCTCGACGTCCCACACCATTCGGAGGGGGGAGCGG
AGAAAGAGATGGGGCTTAGCGAGCTCCTTGACGGCTTCTTCAAGCCTTCA
GTGACCCTCACCTGCACGCGATGCGCTTACTCCAGGCGGCGTCGGGAGCT
GTACCGCGATTTTTCCCTCGACGTCCCACACCATTCGGAGGGGGGAGCGG
AGAAAGAGATGGGGCTTAGCGAGCTCCTTGACGGCTTCTTCAAGCCTTCA
GTGCTGAAACTTCGCTGCGAGCTGTGCGACAACGACGTGCTGAAACTTCG
CTGCGAGCTGTGCGACAACGAC
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