mRNA_F-serratus_M_contig6445.17380.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6445.17380.1
Unique NamemRNA_F-serratus_M_contig6445.17380.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6445.17380.1 vs. uniprot
Match: D7G102_ECTSI (Fatty acid desaturase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G102_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.310e-21
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 3 
Query:   39 PSMSHMLYEEIAPIVRETCREFCIPYNAHPTLWSAYKSYLKHLVHCSDV 185
            PSMSHMLY EIAPIV++ C EF IPYNAHPTLWSAY SYLKHLV CS++
Sbjct:   14 PSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHLVVCSEM 62
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BLAST of mRNA_F-serratus_M_contig6445.17380.1 vs. uniprot
Match: A0A6H5KKY7_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.130e-18
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 3 
Query:   39 PSMSHMLYEEIAPIVRETCREFCIPYNAHPTLWSAYKSYLKHLVHCSDV 185
            PSMSHMLY EIAPIV++ C+EF IPYNAHPTLW+AY SYLKHLV CS++
Sbjct:  642 PSMSHMLYAEIAPIVKDACKEFNIPYNAHPTLWTAYASYLKHLVVCSEM 690
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BLAST of mRNA_F-serratus_M_contig6445.17380.1 vs. uniprot
Match: A0A835YNM2_9STRA (FA_desaturase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.370e-13
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 3 
Query:   39 PSMSHMLYEEIAPIVRETCREFCIPYNAHPTLWSAYKSYLKHL 167
            PSM HM Y  +AP+VR TC EF IPY+AH TLWSAY SYL+ L
Sbjct:   14 PSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 56
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BLAST of mRNA_F-serratus_M_contig6445.17380.1 vs. uniprot
Match: A0A1Y1HQT8_KLENI (Acyl-CoA dependent delta5-desaturase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HQT8_KLENI)

HSP 1 Score: 60.5 bits (145), Expect = 3.490e-9
Identity = 22/43 (51.16%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:   39 PSMSHMLYEEIAPIVRETCREFCIPYNAHPTLWSAYKSYLKHL 167
            P + H+ Y EIAPIV++TC+EF +PYN HP+LW+  +S+ +H+
Sbjct:  469 PGVCHVYYPEIAPIVQQTCKEFDVPYNCHPSLWAGLQSHFRHM 511
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BLAST of mRNA_F-serratus_M_contig6445.17380.1 vs. uniprot
Match: A0A1Y1I2T6_KLENI (Delta 5 fatty acid desaturase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I2T6_KLENI)

HSP 1 Score: 55.5 bits (132), Expect = 2.030e-7
Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 3 
Query:   39 PSMSHMLYEEIAPIVRETCREFCIPYNAHPTLWSAYKSYLKHL 167
            P   H  Y  IAPIVR+TC EF +PY+  PT W   KS+ KHL
Sbjct:  436 PGFCHFYYPAIAPIVRQTCTEFDVPYHCFPTFWEGLKSHFKHL 478
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BLAST of mRNA_F-serratus_M_contig6445.17380.1 vs. uniprot
Match: UPI001F0D6E27 (fatty acid desaturase n=1 Tax=Streptomyces sp. F001 TaxID=1510026 RepID=UPI001F0D6E27)

HSP 1 Score: 50.4 bits (119), Expect = 2.150e-6
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 MGGINYQIEHHLFPRCLTCSTRRSRPSSERPAASFASLTTR 123
            MGG+NYQIEHHLFP   T + RR++  +ER   S+AS TTR
Sbjct:    1 MGGLNYQIEHHLFPSMPTPALRRAQVITERYCPSWASRTTR 41
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BLAST of mRNA_F-serratus_M_contig6445.17380.1 vs. uniprot
Match: E0ZJ63_PICSI (Sphingolipid desaturase-like protein (Fragment) n=5 Tax=Picea sitchensis TaxID=3332 RepID=E0ZJ63_PICSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.510e-6
Identity = 19/43 (44.19%), Postives = 32/43 (74.42%), Query Frame = 3 
Query:   39 PSMSHMLYEEIAPIVRETCREFCIPYNAHPTLWSAYKSYLKHL 167
            PS+ H+ Y  I  IV+ETC++F +PY+++P+ W+A K++  HL
Sbjct:  108 PSVCHLYYPSIHSIVKETCKDFDVPYHSYPSFWTALKAHFLHL 150
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BLAST of mRNA_F-serratus_M_contig6445.17380.1 vs. uniprot
Match: A0A522T616_9BACT (Acyl-CoA desaturase n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A522T616_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 6.290e-6
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 3 
Query:   39 PSMSHMLYEEIAPIVRETCREFCIPYNAHPTLWSAYKSYLKHL 167
            P +SH+ Y  I+P+V+ETCREF +PY A+PT   A  S+L HL
Sbjct:  307 PRVSHVHYRAISPLVKETCREFNLPYVAYPTFAKAVASHLLHL 349
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BLAST of mRNA_F-serratus_M_contig6445.17380.1 vs. uniprot
Match: B8LR83_PICSI (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LR83_PICSI)

HSP 1 Score: 51.2 bits (121), Expect = 6.370e-6
Identity = 19/43 (44.19%), Postives = 32/43 (74.42%), Query Frame = 3 
Query:   39 PSMSHMLYEEIAPIVRETCREFCIPYNAHPTLWSAYKSYLKHL 167
            PS+ H+ Y  I  IV+ETC++F +PY+++P+ W+A K++  HL
Sbjct:  416 PSVCHLYYPSIHSIVKETCKDFDVPYHSYPSFWTALKAHFLHL 458
[Close]
BLAST of mRNA_F-serratus_M_contig6445.17380.1 vs. uniprot
Match: UPI0006964E57 (fatty acid desaturase n=1 Tax=Aureispira sp. CCB-QB1 TaxID=1313421 RepID=UPI0006964E57)

HSP 1 Score: 50.8 bits (120), Expect = 8.690e-6
Identity = 20/43 (46.51%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:   39 PSMSHMLYEEIAPIVRETCREFCIPYNAHPTLWSAYKSYLKHL 167
            P++S+    EIAPIV+ETC+EF +PY+ +PTL+S Y+++  ++
Sbjct:  390 PTISYSRLHEIAPIVKETCKEFDLPYHYYPTLFSVYRAHFSYI 432
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6445.17380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7G102_ECTSI2.310e-2179.59Fatty acid desaturase, partial n=1 Tax=Ectocarpus ... [more]
A0A6H5KKY7_9PHAE2.130e-1877.55Cytochrome b5 heme-binding domain-containing prote... [more]
A0A835YNM2_9STRA3.370e-1367.44FA_desaturase domain-containing protein (Fragment)... [more]
A0A1Y1HQT8_KLENI3.490e-951.16Acyl-CoA dependent delta5-desaturase n=1 Tax=Klebs... [more]
A0A1Y1I2T6_KLENI2.030e-753.49Delta 5 fatty acid desaturase n=1 Tax=Klebsormidiu... [more]
UPI001F0D6E272.150e-658.54fatty acid desaturase n=1 Tax=Streptomyces sp. F00... [more]
E0ZJ63_PICSI2.510e-644.19Sphingolipid desaturase-like protein (Fragment) n=... [more]
A0A522T616_9BACT6.290e-653.49Acyl-CoA desaturase n=1 Tax=Chitinophagaceae bacte... [more]
B8LR83_PICSI6.370e-644.19Cytochrome b5 heme-binding domain-containing prote... [more]
UPI0006964E578.690e-646.51fatty acid desaturase n=1 Tax=Aureispira sp. CCB-Q... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6445contigF-serratus_M_contig6445:28551..29106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size188
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931990.1286812-CDS-F-serratus_M_contig6445:28550..286681622931990.1286812-CDS-F-serratus_M_contig6445:28550..28668Fucus serratus maleCDSF-serratus_M_contig6445 28551..28668 +
1690964091.826921-CDS-F-serratus_M_contig6445:28550..286681690964091.826921-CDS-F-serratus_M_contig6445:28550..28668Fucus serratus maleCDSF-serratus_M_contig6445 28551..28668 +
1622931990.1539598-CDS-F-serratus_M_contig6445:29038..291061622931990.1539598-CDS-F-serratus_M_contig6445:29038..29106Fucus serratus maleCDSF-serratus_M_contig6445 29039..29106 +
1690964091.8382006-CDS-F-serratus_M_contig6445:29038..291061690964091.8382006-CDS-F-serratus_M_contig6445:29038..29106Fucus serratus maleCDSF-serratus_M_contig6445 29039..29106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6445.17380.1prot_F-serratus_M_contig6445.17380.1Fucus serratus malepolypeptideF-serratus_M_contig6445 28551..29106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6445.17380.1

>prot_F-serratus_M_contig6445.17380.1 ID=prot_F-serratus_M_contig6445.17380.1|Name=mRNA_F-serratus_M_contig6445.17380.1|organism=Fucus serratus male|type=polypeptide|length=62bp
MGGINYQIEHHLFPRCLTCSTRRSRPSSERPAASFASLTTRIQRFGRPTS
RTSSTWCTAATW
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mRNA from alignment at F-serratus_M_contig6445:28551..29106+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6445.17380.1 ID=mRNA_F-serratus_M_contig6445.17380.1|Name=mRNA_F-serratus_M_contig6445.17380.1|organism=Fucus serratus male|type=mRNA|length=556bp|location=Sequence derived from alignment at F-serratus_M_contig6445:28551..29106+ (Fucus serratus male)
ATGGGAGGCATCAACTACCAGATAGAGCACCATCTGTTCCCTCGATGTCT
CACATGCTCTACGAGGAGATCGCGCCCATCGTCAGAGAGACCTGCCGCGA
GTTTTGCATCCCTTACAAGTGAGTCAGGACATACTTCTTGTTTTTACGTA
CTTAGGCAACTAAATGTAACGATAAACGCCGGTGGTATGGGAGCAGCGAG
TGTCATACGCCCGAAACATCTGCTGCTGAGTCCGAACATAATTGCGAGCC
ATCATGAGTTTCATAGCTCCCCCCCGAGTCCTGTAGGAGGCTTATGTGAG
ACGCAAAGACCGACAATATCCCCGCCCCCGTCCCCTCAATCGCCAACTTC
CGCGTGTTTCGCCGCTCTTGTGACCCGCTCGGCTATCGCCACTGCCCTTC
CCTGTCCTTGCGCAATGTGCCGTTGCGCCCCGCGTGTCTCCTGTCCCTCG
CTCTCCCGCCCGAATCTTGTTCGGCTTGGGACTGTTAGCGCGCATCCAAC
GCTTTGGTCGGCCTACAAGTCGTACCTCAAGCACCTGGTGCACTGCAGCG
ACGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6445:28551..29106+

>mRNA_F-serratus_M_contig6445.17380.1 ID=mRNA_F-serratus_M_contig6445.17380.1|Name=mRNA_F-serratus_M_contig6445.17380.1|organism=Fucus serratus male|type=CDS|length=372bp|location=Sequence derived from alignment at F-serratus_M_contig6445:28551..29106+ (Fucus serratus male)
ATGGGAGGCATCAACTACCAGATAGAGCACCATCTGTTCCCTCGATGTCT
CACATGCTCTACGAGGAGATCGCGCCCATCGTCAGAGAGACCTGCCGCGA
GTTTTGCATCCCTTACAAATGGGAGGCATCAACTACCAGATAGAGCACCA
TCTGTTCCCTCGATGTCTCACATGCTCTACGAGGAGATCGCGCCCATCGT
CAGAGAGACCTGCCGCGAGTTTTGCATCCCTTACAACGCGCATCCAACGC
TTTGGTCGGCCTACAAGTCGTACCTCAAGCACCTGGTGCACTGCAGCGAC
GTGGCGCGCATCCAACGCTTTGGTCGGCCTACAAGTCGTACCTCAAGCAC
CTGGTGCACTGCAGCGACGTGG
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