mRNA_F-serratus_M_contig6440.17379.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6440.17379.1
Unique NamemRNA_F-serratus_M_contig6440.17379.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.280e-27
Identity = 52/89 (58.43%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    1 PLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLE-SKNMTGSLVVPLICDLRTGL 264
            PL V+QDVETRWWS+ +M+ERL+YL +A++LHES DN+ P+L   DW VL L++P+L PFM  QK LE +K +TGS+ VP I +LR GL
Sbjct:  224 PLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGL 312          
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.450e-24
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 1
Query:    1 PLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLE-SKNMTGSLVVPLICDLRTGL 264
            PL V+QDVETRWWST +MV RL+YL +A++LHES+D V PLL   DW VL L++P+L PFM  QK LE ++ +TGS+ +  + +LR GL
Sbjct:  188 PLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGL 276          
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.720e-19
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    7 RVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLE-SKNMTGSLVVPLICDLRTGL 264
            +V+QDVETRWWST + + RL+ LRR +  HE +D++ PLL   DW VL++++P+  PF+  QK  E SK++T SLV+P I DLR  L
Sbjct:  199 KVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDEL 285          
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 8.050e-19
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   10 VIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLE-SKNMTGSLVVPLICDLRTGL 264
            V+QDVETRWWST   + RL+ LRR +  HE +D+  PLL   DW VL+L++ +L PFM  QK LE SK +T  LV P I DL+ GL
Sbjct:  156 VVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGL 241          
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.580e-12
Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    7 RVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLE-SKNMTGSLVVPLICDLRTGL 264
            +V+QDVETRWWST                   +D++ PLL   DW VL+L++P+L PFM  QK LE SK +T SLV   I DLR  L
Sbjct:  143 KVVQDVETRWWSTP----------------REIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDEL 213          
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A224XKI7_9HEMI (Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XKI7_9HEMI)

HSP 1 Score: 55.5 bits (132), Expect = 6.440e-7
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 PLRVIQDVETRWWSTQSMVERLVYLRRAVELHESL-DNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLES-KNMTGSLVVPLICDLR 255
            PL++IQ+V+TRW ST  M+ER V L  A++   ++ D   P L   +W +L+ +  +L P+  V K +   K  T ++V+PL   LR
Sbjct:  327 PLKLIQEVQTRWNSTYYMLERFVSLEEAIKSTMAIIDKDLPKLNFEEWKILKEMCQILKPYENVTKAISGDKYCTAAIVIPLCNGLR 413          
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A498MJP0_LABRO (Zinc finger BED domain-containing 6-like isoform X2 n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498MJP0_LABRO)

HSP 1 Score: 55.1 bits (131), Expect = 6.450e-7
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 PLRVIQDVETRWWSTQSMVERLVYLRRAVELH-ESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLES-KNMTGSLVVPLI 243
            PL+++Q+V+TRW ST  M++RL+ LR  V     SL N    L S D++++     VLAPF +  ++L   K ++ S ++P+I
Sbjct:  116 PLKLLQEVDTRWNSTHDMLQRLIDLREPVGAALASLSNDIMPLSSADFDIISESLEVLAPFKYATEELSGEKRVSASKIIPII 198          
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A2S2R5W4_9HEMI (Zinc finger BED domain-containing protein 1 n=1 Tax=Sipha flava TaxID=143950 RepID=A0A2S2R5W4_9HEMI)

HSP 1 Score: 52.0 bits (123), Expect = 1.730e-6
Identity = 30/86 (34.88%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    4 LRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTP-LLGSVDWNVLELLKPVLAPFMFVQKKLESKNM-TGSLVVPLICDLR 255
            L+V QD+ TRW+ST +M+ERL+ ++  +    S  + TP  L + +W ++     +L PF  +  +L  +N  T SL++PLI  L+
Sbjct:   25 LKVKQDISTRWYSTFTMIERLIKIKIPLTASMSSFSRTPNCLNASEWEIITDCINILKPFKNITSELSGENYPTLSLIIPLIRGLQ 110          
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A6V7VT18_9BILA (Hypothetical protein n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7VT18_9BILA)

HSP 1 Score: 53.5 bits (127), Expect = 2.210e-6
Identity = 27/87 (31.03%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    4 LRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLESKNMTGSLVVPLICDLRTGL 264
            L + +D+E RW ST  M++RL+ +RR ++L    +N+ P   + DW  L  +K +L       K L+++ ++ S+++P+ C L+  L
Sbjct:   74 LSLQKDIEVRWNSTFEMIDRLIKIRRVIDLLCDRNNI-PSFSNTDWLSLGSIKKLLQSVYDATKLLQNQTVSISVIIPIYCALQHNL 159          
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A7D9LGR5_PARCT (Zinc finger BED domain-containing 4-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LGR5_PARCT)

HSP 1 Score: 53.9 bits (128), Expect = 2.220e-6
Identity = 29/84 (34.52%), Postives = 48/84 (57.14%), Query Frame = 1
Query:    1 PLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLESKNMTGSLVVPLICDL 252
            PL ++QDV TRW S+  MVER+V L+R ++L+    +  P + + +W + E    +L PF  + K++  +    S V+P I  L
Sbjct:  224 PLLLVQDVPTRWNSSYLMVERVVKLKRPIQLYLYDHDNLPTITANEWQISERFLHILKPFFDLTKEMSGEYSILSDVIPNIATL 307          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KUY5_9PHAE3.280e-2758.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI1.450e-2456.18Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JJV8_9PHAE2.720e-1950.57Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE8.050e-1953.49Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE1.580e-1245.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A224XKI7_9HEMI6.440e-736.78Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylu... [more]
A0A498MJP0_LABRO6.450e-737.35Zinc finger BED domain-containing 6-like isoform X... [more]
A0A2S2R5W4_9HEMI1.730e-634.88Zinc finger BED domain-containing protein 1 n=1 Ta... [more]
A0A6V7VT18_9BILA2.210e-631.03Hypothetical protein n=1 Tax=Meloidogyne enterolob... [more]
A0A7D9LGR5_PARCT2.220e-634.52Zinc finger BED domain-containing 4-like n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6440contigF-serratus_M_contig6440:13279..13548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue5.8e-21
Seed eggNOG ortholog2880.D7G5Z0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931990.0826108-CDS-F-serratus_M_contig6440:13278..135481622931990.0826108-CDS-F-serratus_M_contig6440:13278..13548Fucus serratus maleCDSF-serratus_M_contig6440 13279..13548 +
1690964091.81367-CDS-F-serratus_M_contig6440:13278..135481690964091.81367-CDS-F-serratus_M_contig6440:13278..13548Fucus serratus maleCDSF-serratus_M_contig6440 13279..13548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6440.17379.1prot_F-serratus_M_contig6440.17379.1Fucus serratus malepolypeptideF-serratus_M_contig6440 13279..13548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6440.17379.1

>prot_F-serratus_M_contig6440.17379.1 ID=prot_F-serratus_M_contig6440.17379.1|Name=mRNA_F-serratus_M_contig6440.17379.1|organism=Fucus serratus male|type=polypeptide|length=90bp
PLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVL
ELLKPVLAPFMFVQKKLESKNMTGSLVVPLICDLRTGLG*
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mRNA from alignment at F-serratus_M_contig6440:13279..13548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6440.17379.1 ID=mRNA_F-serratus_M_contig6440.17379.1|Name=mRNA_F-serratus_M_contig6440.17379.1|organism=Fucus serratus male|type=mRNA|length=270bp|location=Sequence derived from alignment at F-serratus_M_contig6440:13279..13548+ (Fucus serratus male)
CCTTTGAGGGTAATTCAGGACGTAGAGACGCGGTGGTGGTCGACGCAGTC GATGGTCGAGCGCCTGGTTTACCTTCGACGTGCTGTTGAGCTGCATGAGT CCCTGGACAACGTCACCCCCCTGCTAGGGTCGGTGGACTGGAACGTCCTG GAGCTGCTCAAGCCTGTACTTGCGCCGTTCATGTTTGTCCAGAAGAAGCT CGAGTCCAAAAACATGACGGGAAGCTTGGTCGTGCCGCTCATCTGTGACC TCCGTACCGGGTTGGGTTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6440:13279..13548+

>mRNA_F-serratus_M_contig6440.17379.1 ID=mRNA_F-serratus_M_contig6440.17379.1|Name=mRNA_F-serratus_M_contig6440.17379.1|organism=Fucus serratus male|type=CDS|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig6440:13279..13548+ (Fucus serratus male)
CCTTTGAGGGTAATTCAGGACGTAGAGACGCGGTGGTGGTCGACGCAGTC
GATGGTCGAGCGCCTGGTTTACCTTCGACGTGCTGTTGAGCTGCATGAGT
CCCTGGACAACGTCACCCCCCTGCTAGGGTCGGTGGACTGGAACGTCCTG
GAGCTGCTCAAGCCTGTACTTGCGCCGTTCATGTTTGTCCAGAAGAAGCT
CGAGTCCAAAAACATGACGGGAAGCTTGGTCGTGCCGCTCATCTGTGACC
TCCGTACCGGGTTGGGTTAGCCTTTGAGGGTAATTCAGGACGTAGAGACG
CGGTGGTGGTCGACGCAGTCGATGGTCGAGCGCCTGGTTTACCTTCGACG
TGCTGTTGAGCTGCATGAGTCCCTGGACAACGTCACCCCCCTGCTAGGGT
CGGTGGACTGGAACGTCCTGGAGCTGCTCAAGCCTGTACTTGCGCCGTTC
ATGTTTGTCCAGAAGAAGCTCGAGTCCAAAAACATGACGGGAAGCTTGGT
CGTGCCGCTCATCTGTGACCTCCGTACCGGGTTGGGTTAG
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