mRNA_F-serratus_M_contig6440.17379.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 112 bits (281), Expect = 3.280e-27 Identity = 52/89 (58.43%), Postives = 69/89 (77.53%), Query Frame = 1
Query: 1 PLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLE-SKNMTGSLVVPLICDLRTGL 264
PL V+QDVETRWWS+ +M+ERL+YL +A++LHES DN+ P+L DW VL L++P+L PFM QK LE +K +TGS+ VP I +LR GL
Sbjct: 224 PLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELRNGL 312
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 105 bits (262), Expect = 1.450e-24 Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 1
Query: 1 PLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLE-SKNMTGSLVVPLICDLRTGL 264
PL V+QDVETRWWST +MV RL+YL +A++LHES+D V PLL DW VL L++P+L PFM QK LE ++ +TGS+ + + +LR GL
Sbjct: 188 PLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLEGAQYVTGSMTIGKMAELREGL 276
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 2.720e-19 Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 1
Query: 7 RVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLE-SKNMTGSLVVPLICDLRTGL 264
+V+QDVETRWWST + + RL+ LRR + HE +D++ PLL DW VL++++P+ PF+ QK E SK++T SLV+P I DLR L
Sbjct: 199 KVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLRDEL 285
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 8.050e-19 Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 10 VIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLE-SKNMTGSLVVPLICDLRTGL 264
V+QDVETRWWST + RL+ LRR + HE +D+ PLL DW VL+L++ +L PFM QK LE SK +T LV P I DL+ GL
Sbjct: 156 VVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSPYIADLQDGL 241
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 1.580e-12 Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 7 RVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLE-SKNMTGSLVVPLICDLRTGL 264
+V+QDVETRWWST +D++ PLL DW VL+L++P+L PFM QK LE SK +T SLV I DLR L
Sbjct: 143 KVVQDVETRWWSTP----------------REIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLRDEL 213
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A224XKI7_9HEMI (Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XKI7_9HEMI) HSP 1 Score: 55.5 bits (132), Expect = 6.440e-7 Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 1 PLRVIQDVETRWWSTQSMVERLVYLRRAVELHESL-DNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLES-KNMTGSLVVPLICDLR 255
PL++IQ+V+TRW ST M+ER V L A++ ++ D P L +W +L+ + +L P+ V K + K T ++V+PL LR
Sbjct: 327 PLKLIQEVQTRWNSTYYMLERFVSLEEAIKSTMAIIDKDLPKLNFEEWKILKEMCQILKPYENVTKAISGDKYCTAAIVIPLCNGLR 413
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A498MJP0_LABRO (Zinc finger BED domain-containing 6-like isoform X2 n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498MJP0_LABRO) HSP 1 Score: 55.1 bits (131), Expect = 6.450e-7 Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = 1
Query: 1 PLRVIQDVETRWWSTQSMVERLVYLRRAVELH-ESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLES-KNMTGSLVVPLI 243
PL+++Q+V+TRW ST M++RL+ LR V SL N L S D++++ VLAPF + ++L K ++ S ++P+I
Sbjct: 116 PLKLLQEVDTRWNSTHDMLQRLIDLREPVGAALASLSNDIMPLSSADFDIISESLEVLAPFKYATEELSGEKRVSASKIIPII 198
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A2S2R5W4_9HEMI (Zinc finger BED domain-containing protein 1 n=1 Tax=Sipha flava TaxID=143950 RepID=A0A2S2R5W4_9HEMI) HSP 1 Score: 52.0 bits (123), Expect = 1.730e-6 Identity = 30/86 (34.88%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 4 LRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTP-LLGSVDWNVLELLKPVLAPFMFVQKKLESKNM-TGSLVVPLICDLR 255
L+V QD+ TRW+ST +M+ERL+ ++ + S + TP L + +W ++ +L PF + +L +N T SL++PLI L+
Sbjct: 25 LKVKQDISTRWYSTFTMIERLIKIKIPLTASMSSFSRTPNCLNASEWEIITDCINILKPFKNITSELSGENYPTLSLIIPLIRGLQ 110
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A6V7VT18_9BILA (Hypothetical protein n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7VT18_9BILA) HSP 1 Score: 53.5 bits (127), Expect = 2.210e-6 Identity = 27/87 (31.03%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 4 LRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLESKNMTGSLVVPLICDLRTGL 264
L + +D+E RW ST M++RL+ +RR ++L +N+ P + DW L +K +L K L+++ ++ S+++P+ C L+ L
Sbjct: 74 LSLQKDIEVRWNSTFEMIDRLIKIRRVIDLLCDRNNI-PSFSNTDWLSLGSIKKLLQSVYDATKLLQNQTVSISVIIPIYCALQHNL 159
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Match: A0A7D9LGR5_PARCT (Zinc finger BED domain-containing 4-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LGR5_PARCT) HSP 1 Score: 53.9 bits (128), Expect = 2.220e-6 Identity = 29/84 (34.52%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 1 PLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLELLKPVLAPFMFVQKKLESKNMTGSLVVPLICDL 252
PL ++QDV TRW S+ MVER+V L+R ++L+ + P + + +W + E +L PF + K++ + S V+P I L
Sbjct: 224 PLLLVQDVPTRWNSSYLMVERVVKLKRPIQLYLYDHDNLPTITANEWQISERFLHILKPFFDLTKEMSGEYSILSDVIPNIATL 307 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6440.17379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6440.17379.1 >prot_F-serratus_M_contig6440.17379.1 ID=prot_F-serratus_M_contig6440.17379.1|Name=mRNA_F-serratus_M_contig6440.17379.1|organism=Fucus serratus male|type=polypeptide|length=90bp PLRVIQDVETRWWSTQSMVERLVYLRRAVELHESLDNVTPLLGSVDWNVLback to top mRNA from alignment at F-serratus_M_contig6440:13279..13548+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6440.17379.1 ID=mRNA_F-serratus_M_contig6440.17379.1|Name=mRNA_F-serratus_M_contig6440.17379.1|organism=Fucus serratus male|type=mRNA|length=270bp|location=Sequence derived from alignment at F-serratus_M_contig6440:13279..13548+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6440:13279..13548+ >mRNA_F-serratus_M_contig6440.17379.1 ID=mRNA_F-serratus_M_contig6440.17379.1|Name=mRNA_F-serratus_M_contig6440.17379.1|organism=Fucus serratus male|type=CDS|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig6440:13279..13548+ (Fucus serratus male)back to top |