mRNA_F-serratus_M_contig6440.17377.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6440.17377.1
Unique NamemRNA_F-serratus_M_contig6440.17377.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6440.17377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6440contigF-serratus_M_contig6440:1735..2002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size157
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931989.9456282-CDS-F-serratus_M_contig6440:1734..18131622931989.9456282-CDS-F-serratus_M_contig6440:1734..1813Fucus serratus maleCDSF-serratus_M_contig6440 1735..1813 +
1690964091.76263-CDS-F-serratus_M_contig6440:1734..18131690964091.76263-CDS-F-serratus_M_contig6440:1734..1813Fucus serratus maleCDSF-serratus_M_contig6440 1735..1813 +
1622931989.9645634-CDS-F-serratus_M_contig6440:1924..20011622931989.9645634-CDS-F-serratus_M_contig6440:1924..2001Fucus serratus maleCDSF-serratus_M_contig6440 1925..2001 +
1690964091.7749567-CDS-F-serratus_M_contig6440:1924..20011690964091.7749567-CDS-F-serratus_M_contig6440:1924..2001Fucus serratus maleCDSF-serratus_M_contig6440 1925..2001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6440.17377.1prot_F-serratus_M_contig6440.17377.1Fucus serratus malepolypeptideF-serratus_M_contig6440 1735..2001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6440.17377.1

>prot_F-serratus_M_contig6440.17377.1 ID=prot_F-serratus_M_contig6440.17377.1|Name=mRNA_F-serratus_M_contig6440.17377.1|organism=Fucus serratus male|type=polypeptide|length=52bp
AVERLRVHLKTGCTSDSPAISLYFEKGLGNDLLLELIYRWNLDRSISNRS
LN
back to top

mRNA from alignment at F-serratus_M_contig6440:1735..2002+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6440.17377.1 ID=mRNA_F-serratus_M_contig6440.17377.1|Name=mRNA_F-serratus_M_contig6440.17377.1|organism=Fucus serratus male|type=mRNA|length=268bp|location=Sequence derived from alignment at F-serratus_M_contig6440:1735..2002+ (Fucus serratus male)
GCTGTTGAGCGACTGCGGGTCCACCTCAAAACAGGATGCACCAGCGACAG
CCCTGCAATTTCGCTCTACTTCGAAAAAGGCAAGGGTCAGCTTACGGGTG
TAACGCTCTACCGATGTGCGCGCGGCACCAATGATCTCGAGGGCTTTCAC
AAGCACATGCGTAGCCTGATCGAGTGATGCGTCGGGGCAGGTTTGGGGAA
CGATCTTCTTCTGGAGTTGATCTACCGCTGGAACCTGGACCGGAGCATCA
GCAACAGAAGTCTCAATG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6440:1735..2002+

>mRNA_F-serratus_M_contig6440.17377.1 ID=mRNA_F-serratus_M_contig6440.17377.1|Name=mRNA_F-serratus_M_contig6440.17377.1|organism=Fucus serratus male|type=CDS|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig6440:1735..2002+ (Fucus serratus male)
GCTGTTGAGCGACTGCGGGTCCACCTCAAAACAGGATGCACCAGCGACAG
CCCTGCAATTTCGCTCTACTTCGAAAAAGGCTGTTGAGCGACTGCGGGTC
CACCTCAAAACAGGATGCACCAGCGACAGCCCTGCAATTTCGCTCTACTT
CGAAAAAGGTTTGGGGAACGATCTTCTTCTGGAGTTGATCTACCGCTGGA
ACCTGGACCGGAGCATCAGCAACAGAAGTCTCAATGTTTGGGGAACGATC
TTCTTCTGGAGTTGATCTACCGCTGGAACCTGGACCGGAGCATCAGCAAC
AGAAGTCTCAAT
back to top