mRNA_F-serratus_M_contig644.17375.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig644.17375.1
Unique NamemRNA_F-serratus_M_contig644.17375.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig644.17375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig644contigF-serratus_M_contig644:402018..402691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size675
Cds size672
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931988.353842-CDS-F-serratus_M_contig644:402017..4026891622931988.353842-CDS-F-serratus_M_contig644:402017..402689Fucus serratus maleCDSF-serratus_M_contig644 402018..402689 +
1690964090.9357553-CDS-F-serratus_M_contig644:402017..4026891690964090.9357553-CDS-F-serratus_M_contig644:402017..402689Fucus serratus maleCDSF-serratus_M_contig644 402018..402689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig644.17375.1prot_F-serratus_M_contig644.17375.1Fucus serratus malepolypeptideF-serratus_M_contig644 402018..402689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig644.17375.1

>prot_F-serratus_M_contig644.17375.1 ID=prot_F-serratus_M_contig644.17375.1|Name=mRNA_F-serratus_M_contig644.17375.1|organism=Fucus serratus male|type=polypeptide|length=224bp
RRKRERAKAKVRKNKNASAAATTTAAAAAAATAEAVAAKGSTPSEDGTKG
ERTPTSESGRDRASRMPAASEKSINGSVGVAIARQGIATAVARVTTSPLP
NGTAVGAGEGSRTASRSRDSVGEENSLKADRFPTTHGWRAAGRSTPVEDE
DDFVRSGKPKARRSATTQNWRAWSRGAGNLDNGTSGSGSNRSRLRGGGGS
FNLHGGRGVEGMRDHAARDSKPRE
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mRNA from alignment at F-serratus_M_contig644:402018..402691+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig644.17375.1 ID=mRNA_F-serratus_M_contig644.17375.1|Name=mRNA_F-serratus_M_contig644.17375.1|organism=Fucus serratus male|type=mRNA|length=674bp|location=Sequence derived from alignment at F-serratus_M_contig644:402018..402691+ (Fucus serratus male)
AGACGAAAAAGAGAGCGCGCCAAGGCAAAGGTGCGGAAAAACAAGAACGC
CTCCGCAGCAGCAACGACAACAGCAGCAGCAGCTGCGGCGGCGACGGCGG
AAGCAGTTGCGGCGAAGGGCTCAACTCCCTCCGAAGACGGAACGAAGGGA
GAAAGAACCCCAACTTCCGAGTCTGGGCGAGACCGCGCGTCAAGGATGCC
GGCGGCCAGTGAAAAGTCGATCAACGGAAGCGTCGGCGTGGCTATTGCAC
GCCAGGGTATCGCTACCGCTGTCGCGCGCGTTACCACTTCACCACTGCCG
AACGGTACCGCGGTCGGCGCTGGGGAAGGGTCGCGGACGGCGTCCCGGAG
TCGCGACAGCGTTGGCGAGGAAAACTCGTTGAAGGCCGATCGTTTCCCCA
CCACGCATGGCTGGCGGGCGGCAGGGAGATCGACCCCGGTTGAAGATGAG
GACGATTTCGTTAGGAGTGGAAAGCCTAAGGCAAGGCGATCCGCGACGAC
TCAAAACTGGCGAGCGTGGTCTCGGGGTGCCGGTAACTTGGACAACGGCA
CCAGCGGCAGTGGCAGCAACAGAAGCCGCTTGCGGGGTGGTGGTGGTAGC
TTCAATCTCCACGGTGGGCGAGGAGTGGAGGGGATGAGGGACCACGCAGC
GCGTGATTCGAAACCACGTGAGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig644:402018..402691+

>mRNA_F-serratus_M_contig644.17375.1 ID=mRNA_F-serratus_M_contig644.17375.1|Name=mRNA_F-serratus_M_contig644.17375.1|organism=Fucus serratus male|type=CDS|length=1344bp|location=Sequence derived from alignment at F-serratus_M_contig644:402018..402691+ (Fucus serratus male)
AGACGAAAAAGAGAGCGCGCCAAGGCAAAGGTGCGGAAAAACAAGAACGC
CTCCGCAGCAGCAACGACAACAGCAGCAGCAGCTGCGGCGGCGACGGCGG
AAGCAGTTGCGGCGAAGGGCTCAACTCCCTCCGAAGACGGAACGAAGGGA
GAAAGAACCCCAACTTCCGAGTCTGGGCGAGACCGCGCGTCAAGGATGCC
GGCGGCCAGTGAAAAGTCGATCAACGGAAGCGTCGGCGTGGCTATTGCAC
GCCAGGGTATCGCTACCGCTGTCGCGCGCGTTACCACTTCACCACTGCCG
AACGGTACCGCGGTCGGCGCTGGGGAAGGGTCGCGGACGGCGTCCCGGAG
TCGCGACAGCGTTGGCGAGGAAAACTCGTTGAAGGCCGATCGTTTCCCCA
CCACGCATGGCTGGCGGGCGGCAGGGAGATCGACCCCGGTTGAAGATGAG
GACGATTTCGTTAGGAGTGGAAAGCCTAAGGCAAGGCGATCCGCGACGAC
TCAAAACTGGCGAGCGTGGTCTCGGGGTGCCGGTAACTTGGACAACGGCA
CCAGCGGCAGTGGCAGCAACAGAAGCCGCTTGCGGGGTGGTGGTGGTAGC
TTCAATCTCCACGGTGGGCGAGGAGTGGAGGGGATGAGGGACCACGCAGC
GCGTGATTCGAAACCACGTGAGAGACGAAAAAGAGAGCGCGCCAAGGCAA
AGGTGCGGAAAAACAAGAACGCCTCCGCAGCAGCAACGACAACAGCAGCA
GCAGCTGCGGCGGCGACGGCGGAAGCAGTTGCGGCGAAGGGCTCAACTCC
CTCCGAAGACGGAACGAAGGGAGAAAGAACCCCAACTTCCGAGTCTGGGC
GAGACCGCGCGTCAAGGATGCCGGCGGCCAGTGAAAAGTCGATCAACGGA
AGCGTCGGCGTGGCTATTGCACGCCAGGGTATCGCTACCGCTGTCGCGCG
CGTTACCACTTCACCACTGCCGAACGGTACCGCGGTCGGCGCTGGGGAAG
GGTCGCGGACGGCGTCCCGGAGTCGCGACAGCGTTGGCGAGGAAAACTCG
TTGAAGGCCGATCGTTTCCCCACCACGCATGGCTGGCGGGCGGCAGGGAG
ATCGACCCCGGTTGAAGATGAGGACGATTTCGTTAGGAGTGGAAAGCCTA
AGGCAAGGCGATCCGCGACGACTCAAAACTGGCGAGCGTGGTCTCGGGGT
GCCGGTAACTTGGACAACGGCACCAGCGGCAGTGGCAGCAACAGAAGCCG
CTTGCGGGGTGGTGGTGGTAGCTTCAATCTCCACGGTGGGCGAGGAGTGG
AGGGGATGAGGGACCACGCAGCGCGTGATTCGAAACCACGTGAG
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