mRNA_F-serratus_M_contig6431.17363.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6431.17363.1
Unique NamemRNA_F-serratus_M_contig6431.17363.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6431.17363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6431contigF-serratus_M_contig6431:25336..25573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size138
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6431.17363.1prot_F-serratus_M_contig6431.17363.1Fucus serratus malepolypeptideF-serratus_M_contig6431 25336..25546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931987.8041122-CDS-F-serratus_M_contig6431:25335..254221622931987.8041122-CDS-F-serratus_M_contig6431:25335..25422Fucus serratus maleCDSF-serratus_M_contig6431 25336..25422 +
1690964090.7268553-CDS-F-serratus_M_contig6431:25335..254221690964090.7268553-CDS-F-serratus_M_contig6431:25335..25422Fucus serratus maleCDSF-serratus_M_contig6431 25336..25422 +
1622931987.826614-CDS-F-serratus_M_contig6431:25495..255461622931987.826614-CDS-F-serratus_M_contig6431:25495..25546Fucus serratus maleCDSF-serratus_M_contig6431 25496..25546 +
1690964090.7362878-CDS-F-serratus_M_contig6431:25495..255461690964090.7362878-CDS-F-serratus_M_contig6431:25495..25546Fucus serratus maleCDSF-serratus_M_contig6431 25496..25546 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931987.8416839-UTR-F-serratus_M_contig6431:25546..255731622931987.8416839-UTR-F-serratus_M_contig6431:25546..25573Fucus serratus maleUTRF-serratus_M_contig6431 25547..25573 +
1690964090.747978-UTR-F-serratus_M_contig6431:25546..255731690964090.747978-UTR-F-serratus_M_contig6431:25546..25573Fucus serratus maleUTRF-serratus_M_contig6431 25547..25573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6431.17363.1

>prot_F-serratus_M_contig6431.17363.1 ID=prot_F-serratus_M_contig6431.17363.1|Name=mRNA_F-serratus_M_contig6431.17363.1|organism=Fucus serratus male|type=polypeptide|length=46bp
LPTLVSRNRHASGNAYCCSCVLRDVCWNPFSPNSRSPPLCPRFVK*
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mRNA from alignment at F-serratus_M_contig6431:25336..25573+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6431.17363.1 ID=mRNA_F-serratus_M_contig6431.17363.1|Name=mRNA_F-serratus_M_contig6431.17363.1|organism=Fucus serratus male|type=mRNA|length=238bp|location=Sequence derived from alignment at F-serratus_M_contig6431:25336..25573+ (Fucus serratus male)
TTGCCGACGCTGGTCAGTCGCAACCGCCACGCGAGTGGCAACGCGTACTG
CTGTAGTTGCGTCTTGCGTGATGTTTGCTGGAACCCAGTTTTCCCCCGAA
TTTTTGGTCTTCTCGCTCTCCGCAGCAACTCGTATTGCTGTGGTATCCGC
TTGTACCCAGTTTTCCCCGAATTCTCGCTCTCCGCCGTTGTGTCCTCGTT
TTGTAAAATAAAATTTTCCCCCTCATCCATGCATGAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6431:25336..25573+

>mRNA_F-serratus_M_contig6431.17363.1 ID=mRNA_F-serratus_M_contig6431.17363.1|Name=mRNA_F-serratus_M_contig6431.17363.1|organism=Fucus serratus male|type=CDS|length=276bp|location=Sequence derived from alignment at F-serratus_M_contig6431:25336..25573+ (Fucus serratus male)
TTGCCGACGCTGGTCAGTCGCAACCGCCACGCGAGTGGCAACGCGTACTG
CTGTAGTTGCGTCTTGCGTGATGTTTGCTGGAACCCATTGCCGACGCTGG
TCAGTCGCAACCGCCACGCGAGTGGCAACGCGTACTGCTGTAGTTGCGTC
TTGCGTGATGTTTGCTGGAACCCATTTTCCCCGAATTCTCGCTCTCCGCC
GTTGTGTCCTCGTTTTGTAAAATAATTTTCCCCGAATTCTCGCTCTCCGC
CGTTGTGTCCTCGTTTTGTAAAATAA
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