mRNA_F-serratus_M_contig643.17351.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig643.17351.1
Unique NamemRNA_F-serratus_M_contig643.17351.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig643.17351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig643contigF-serratus_M_contig643:227349..228124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig643.17351.1prot_F-serratus_M_contig643.17351.1Fucus serratus malepolypeptideF-serratus_M_contig643 227349..228092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931984.4050024-CDS-F-serratus_M_contig643:227348..2273991622931984.4050024-CDS-F-serratus_M_contig643:227348..227399Fucus serratus maleCDSF-serratus_M_contig643 227349..227399 -
1690964089.1333716-CDS-F-serratus_M_contig643:227348..2273991690964089.1333716-CDS-F-serratus_M_contig643:227348..227399Fucus serratus maleCDSF-serratus_M_contig643 227349..227399 -
1622931984.422694-CDS-F-serratus_M_contig643:227864..2280921622931984.422694-CDS-F-serratus_M_contig643:227864..228092Fucus serratus maleCDSF-serratus_M_contig643 227865..228092 -
1690964089.1432338-CDS-F-serratus_M_contig643:227864..2280921690964089.1432338-CDS-F-serratus_M_contig643:227864..228092Fucus serratus maleCDSF-serratus_M_contig643 227865..228092 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931984.44474-UTR-F-serratus_M_contig643:228092..2281241622931984.44474-UTR-F-serratus_M_contig643:228092..228124Fucus serratus maleUTRF-serratus_M_contig643 228093..228124 -
1690964089.1522994-UTR-F-serratus_M_contig643:228092..2281241690964089.1522994-UTR-F-serratus_M_contig643:228092..228124Fucus serratus maleUTRF-serratus_M_contig643 228093..228124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig643.17351.1

>prot_F-serratus_M_contig643.17351.1 ID=prot_F-serratus_M_contig643.17351.1|Name=mRNA_F-serratus_M_contig643.17351.1|organism=Fucus serratus male|type=polypeptide|length=93bp
MLNPISSAGGMSLEKKKCLDSTISQFKAGVVRLYLDDSSNHPAKTVAEPL
RRSAARRFEVRAERGGTNRHEAQAGKGLREPSSTFYLNIRTFA
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mRNA from alignment at F-serratus_M_contig643:227349..228124-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig643.17351.1 ID=mRNA_F-serratus_M_contig643.17351.1|Name=mRNA_F-serratus_M_contig643.17351.1|organism=Fucus serratus male|type=mRNA|length=776bp|location=Sequence derived from alignment at F-serratus_M_contig643:227349..228124- (Fucus serratus male)
GAAATTTTGTCCTTGAAAGATACCCGTGCTTCATGTTGAACCCTATCTCG
AGTGCGGGCGGCATGTCCCTTGAGAAGAAAAAGTGCCTCGACTCAACAAT
ATCGCAGTTCAAGGCAGGCGTGGTCCGACTTTATCTCGATGACTCCAGCA
ATCATCCCGCAAAAACGGTCGCCGAGCCGCTACGTAGGTCGGCTGCACGT
CGTTTCGAGGTCCGTGCAGAGCGTGGAGGCACAAATCGTCATGAAGCTCA
GGCGGGCAAGGTATGTTCCCACGCTCGGCGTGGCAGGGAGGAAGTTGGCA
ACATCTCCGTCTTGCGGACGGAAAATTTGGTGACACTGCGCGGATCTGTA
GAAGATTCCGCCGTGGGGGAGGCCAATTCGACCGTGTGCCGAGATGCGAC
GGTGCTGCTGGCCAACACCTGAGACTTCGACGGTCGATTGTTTACAACCG
TATGGTGGAAGCCCTTGTCGAGCGAGTGATGCCGCGATATGATTGTCCAC
TTGGGTAGGACGGCCTCCGCTGGAGTAAATCTTCGTCGGCCAGACATGTG
TGTGTATCTGTACTGCATGTAATATATTGTATGCGGTAGCCCTTTTGATC
CATAAGCCACTCGAGCCTCACAGGCGGGCGCAAAGCGATGATCGTGAGTA
CGCGACGAAATAACCCGTGGAAGCACCCTCACGCTTTCCTCTGGCTTCGC
TCACCCGTCAACTCACGCGATGCAGGGTCTGCGAGAGCCGTCCAGCACCT
TCTATCTCAACATCCGAACTTTTGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig643:227349..228124-

>mRNA_F-serratus_M_contig643.17351.1 ID=mRNA_F-serratus_M_contig643.17351.1|Name=mRNA_F-serratus_M_contig643.17351.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig643:227349..228124- (Fucus serratus male)
ATGTTGAACCCTATCTCGAGTGCGGGCGGCATGTCCCTTGAGAAGAAAAA
GTGCCTCGACTCAACAATATCGCAGTTCAAGGCAGGCGTGGTCCGACTTT
ATCTCGATGACTCCAGCAATCATCCCGCAAAAACGGTCGCCGAGCCGCTA
CGTAGGTCGGCTGCACGTCGTTTCGAGGTCCGTGCAGAGCGTGGAGGCAC
AAATCGTCATGAAGCTCAGGCGGGCAAGATGTTGAACCCTATCTCGAGTG
CGGGCGGCATGTCCCTTGAGAAGAAAAAGTGCCTCGACTCAACAATATCG
CAGTTCAAGGCAGGCGTGGTCCGACTTTATCTCGATGACTCCAGCAATCA
TCCCGCAAAAACGGTCGCCGAGCCGCTACGTAGGTCGGCTGCACGTCGTT
TCGAGGTCCGTGCAGAGCGTGGAGGCACAAATCGTCATGAAGCTCAGGCG
GGCAAGGGTCTGCGAGAGCCGTCCAGCACCTTCTATCTCAACATCCGAAC
TTTTGCCGGTCTGCGAGAGCCGTCCAGCACCTTCTATCTCAACATCCGAA
CTTTTGCC
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