mRNA_F-serratus_M_contig64.17323.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig64.17323.1 vs. uniprot
Match: D8LI19_ECTSI (Circadian RNA-binding protein CHLAMY 1 subunit C1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI19_ECTSI) HSP 1 Score: 331 bits (848), Expect = 8.450e-97 Identity = 200/417 (47.96%), Postives = 264/417 (63.31%), Query Frame = 3
Query: 1305 MDHSDIKKWVMSVATRETVATLPEIRRYFNGRVEKVIIDACLVQLHNNFRDTVMACAEFMSIVVPPDVKANTGVKSNVKEERKEEKQPFEAGAAAFLLSPGKEKEEDDVLAAGYLKPGDSDYDFIEHPLEKRANKARETDCKDVKELQDILDEAKGQPGLARTRKLVSKMLKRVKAELEERKQLRQMTKLQEKSLATKEISQKLHPAYANNGPGYASFKPPSIPDGKQPDTTISVPQNVVGWVIGKAGIRIIQLQERTNAAMWIDQNFPNGHARKLHIYGKSSEVEAAVAEVEYLIKSAPINNAR------RVIPTSEGGAPSCLPPGHPDTPPNSSVSKTHAHKVILCPHSLVGLLIGKKGATIMKIKSDSNANVEVNQNFPEGVPREVDITGAPGSVNLAVTMVEEIIASGNRAD 2537
MDHS IK WV+ VA+R +AT EI+RYF+GRV++ +ID + N+ R TV+ CAEF++I VPP+ +E +E+ E A AF KE+ K GD Y EHPLE+RAN+A++ DCKD+ L IL EA G+ GL + +K++ KM+KR+ EE+KQLR + L+ K + SQKLHPAYA+ P ++SF P +IPD K PD + +P NVVGWVIGK G RI +Q +TNAAMW+DQNFP+G RKLHI+G +VEAA+ EVE+L+KSAP+N R + +P G LPPGHPD ++ K I CPH+LVG LIGKKGA I IKS SNANVE+ Q +P+G PR+V ITG V+LA T+V+E+IASG +D
Sbjct: 1 MDHSVIKNWVLEVASRRVLATSDEIKRYFHGRVDEDVIDFYNEEFSNS-RATVIQCAEFLNIEVPPE------------DEEEEDDINSELVAGAF---GAKER----------TKHGD--YSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKMIKRINETREEQKQLRTQSLLKPKREVS---SQKLHPAYASKKPTFSSFAPSTIPD-KVPDAMLDIPPNVVGWVIGKNGARINDIQSKTNAAMWMDQNFPDGVMRKLHIHGNKQQVEAAIDEVEFLMKSAPVNTPRPGKMGPKQLPHGGG-----LPPGHPDL--------NYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTADEVDLAATLVDEVIASGTASD 372
BLAST of mRNA_F-serratus_M_contig64.17323.1 vs. uniprot
Match: A0A6H5KMM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM6_9PHAE) HSP 1 Score: 328 bits (841), Expect = 1.070e-92 Identity = 202/429 (47.09%), Postives = 271/429 (63.17%), Query Frame = 3
Query: 1305 MDHSDIKKWVMSVATRETVATLPEIRRYFNGRVEKVIIDACLVQLHNNFRDTVMACAEFMSIVVPPDVKANTGVKSNVKEERKEEKQPFEAGAAAFLLSPGKEKEE---------DDVLAAGYL----KPGDSDYDFIEHPLEKRANKARETDCKDVKELQDILDEAKGQPGLARTRKLVSKMLKRVKAELEERKQLRQMTKLQEKSLATKEIS-QKLHPAYANNGPGYASFKPPSIPDGKQPDTTISVPQNVVGWVIGKAGIRIIQLQERTNAAMWIDQNFPNGHARKLHIYGKSSEVEAAVAEVEYLIKSAPINNAR--RVIPTS--EGGAPSCLPPGHPDTPPNSSVSKTHAHKVILCPHSLVGLLIGKKGATIMKIKSDSNANVEVNQNFPEGVPREVDITGAPGSVNLAVTMVEEIIASGNRAD 2537
MDHS IK+WV+ VA+R +AT EI+RYF+GRV++ +ID + +N R TV+ CAEF++I VPPD + + G ++K R+ E Q G + L AG + DY EHPLE+RAN+A++ DCKD+ L IL EA G+ GL + +K++ KM+KR+ EE+K+LR + ++ K +E+S QKLHPAYA+ P ++SF P +IPD K PD + +P NVVGWVIGK G RI +Q +TNAAMW+DQNFP+G RKLHI+G +VEAA+AEVE+L+KSAP+N R R+ P GG LPPGHPD ++ K I CPH+LVG LIGKKGA I IKS SNANVE+ Q +P+G PR+V ITG V+LA T+V+E+IASG +D
Sbjct: 400 MDHSVIKEWVLEVASRRVLATPDEIKRYFHGRVDEDVIDFYNEEF-SNCRATVIQCAEFLNIEVPPDDQISRG---DLK--REPEDQGARGGGVXXXXXXXXXXXXXXXXXXXXINSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKMVKRINETREEQKKLRTQSVVKPK----REVSAQKLHPAYASKEPTFSSFAPSTIPD-KVPDAMLDIPPNVVGWVIGKNGARINDIQSKTNAAMWMDQNFPDGVMRKLHIHGNKQQVEAAIAEVEFLMKSAPVNTPRPARMGPKQLPHGGG---LPPGHPDL--------NYSKKTIKCPHALVGYLIGKKGAMIKHIKSMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIASGTASD 806
BLAST of mRNA_F-serratus_M_contig64.17323.1 vs. uniprot
Match: A0A7S2TVW3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TVW3_9EUKA) HSP 1 Score: 107 bits (267), Expect = 1.100e-20 Identity = 67/192 (34.90%), Postives = 102/192 (53.12%), Query Frame = 3
Query: 1998 TISVPQNVVGWVIGKAGIRIIQLQERTNAAMWIDQNFPNGHARKLHIYGKSSEVEAAVAEVEYLIKSAPINNARRVIPTSEGGAPSCLPPGHPDTPPNSSVSKTHAHKV----------------ILCPHSLVGLLIGKKGATIMKIKSDSNANVEVNQNFPEGVPREVDITGAPGSVNLAVTMVEEIIASG 2525
T+ P +VG VIG+AG I L+++T + IDQNFP G+ RK+ I G S++EAAV V + + P ++A P + G L G PP+ S A K + CP LVG +IG+ G TI +++ S ++++NQNFP GVPR++ + GA V V MV++++ +G
Sbjct: 106 TLDCPPTLVGRVIGRAGATIRWLEQKTRCRLQIDQNFPPGYPRKIQIMGNPSDMEAAVKLVTETMHNGPPSDA----PGAGVGMAQDLQSG---LPPSVSTRMNQAFKAAPATEVKGTGPEISETLDCPQHLVGRVIGRGGETIRDLQNRSGCSIQINQNFPPGVPRKITVAGAQSLVVAGVKMVQDVMQNG 290
BLAST of mRNA_F-serratus_M_contig64.17323.1 vs. uniprot
Match: I0ZA07_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0ZA07_COCSC) HSP 1 Score: 94.0 bits (232), Expect = 8.760e-16 Identity = 68/186 (36.56%), Postives = 97/186 (52.15%), Query Frame = 3
Query: 1998 TISVPQNVVGWVIGKAGIRIIQLQERTNAAMWIDQNFPNGHARKLHIYGKSSE-VEAAVAEVEYLIKSAPINNARRVIPTSEGGAPSCLPPGHPDTPPNSSVSKTHAHKVILCPHSLVGLLIGKKGATIMKIKSDSNANVEVNQNFPEGVPREVDITGAPGSVNLAVTMVEEIIASGNRADASTVV 2552
TI +P +VG +IGK G I QLQ TN + ID P G A+K+ I G S E V+AA +VE ++ + + GGA + SV CP +VG +IG+ G TI ++ S A++ V+QN+PEG PR V+I+G P +V AV MV E+I SG A +++
Sbjct: 250 TIDIPAPMVGKLIGKGGETIKQLQYNTNTRVQIDHQTP-GEAKKVSIQGDSHEAVQAAKQQVEQIVS---------MDDSGAGGA-------------SQSVE---------CPQGIVGRIIGRGGETIRALQQASQAHIVVDQNYPEGEPRRVNISGRPDAVERAVKMVSELI-SGEPGSAQSII 402
BLAST of mRNA_F-serratus_M_contig64.17323.1 vs. uniprot
Match: A0A250X1Z5_9CHLO (WW domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X1Z5_9CHLO) HSP 1 Score: 92.4 bits (228), Expect = 1.760e-15 Identity = 64/191 (33.51%), Postives = 92/191 (48.17%), Query Frame = 3
Query: 1980 GKQPDTTISVPQNVVGWVIGKAGIRIIQLQERTNAAMWIDQNFPNGHARKLHIYGKSSEVEAAVAEVEYLIKSAPINNARRVIPTSEGGAPSCLPPGHPDTPPNSSVSKTHAHKVILCPHSLVGLLIGKKGATIMKIKSDSNANVEVNQNFPEGVPREVDITGAPGSVNLAVTMVEEIIASGNRADASTVV 2552
G +P T+ VP VG +IGK G+ I + R + ID P G + + I G ++ ++ I S A +GG G P T S K + CP +VG +IG+ G TI +++ S A++ +NQ+FPEG PREV I+G P +VN A MV E+I S A TV+
Sbjct: 113 GGEPSDTMQVPSGKVGKIIGKGGVTIKDISARGGGKIKIDHETP-GETKTVTISGTQEQIRMTKQLIQDAIDSTEFPGAGNAF-GGQGGY------GAPGTGGGSETRK------VSCPAHIVGRIIGRGGETIRSLQTASTAHIVINQDFPEGHPREVLISGTPDAVNRAHEMVNELINSEGAASTQTVI 289
BLAST of mRNA_F-serratus_M_contig64.17323.1 vs. uniprot
Match: A0A2Z5X880_9CHLO (C1, subunit of the circadian RNA-binding protein CHLAMY1 n=1 Tax=Yamagishiella unicocca TaxID=51707 RepID=A0A2Z5X880_9CHLO) HSP 1 Score: 90.1 bits (222), Expect = 9.250e-15 Identity = 64/192 (33.33%), Postives = 94/192 (48.96%), Query Frame = 3
Query: 1977 DGKQPDTTISVPQNVVGWVIGKAGIRIIQLQERTNAAMWIDQNFPNGHARKLHIYGKSSEVEAAVAEVEYLIKSAPINNARRVIPTSEGGAPSCLPPGHPDTPPNSSVSKTHAHKVILCPHSLVGLLIGKKGATIMKIKSDSNANVEVNQNFPEGVPREVDITGAPGSVNLAVTMVEEIIASGNRADASTVV 2552
DG TI P + VG VIG+AG I L+ T+ + +D P + + I GK +VE A V LI G DT P + K++ CP +VG +IG+ G TI ++ S A++ VNQ+FP+G+PR++ ITG SV+ A+ MV E+I SG+ A+ V+
Sbjct: 138 DGATATETIMCPSDKVGRVIGRAGATIRDLEASTSTRIQVDHKAPG--EKPVTISGKRDDVERAKRTVLDLIS------------------------GTGDTVPVTG----EVQKMLECPQGIVGRVIGRGGETIRTLQQASGAHILVNQDFPDGIPRQITITGTQDSVDRAINMVSELI-SGDHANTQAVI 298
BLAST of mRNA_F-serratus_M_contig64.17323.1 vs. uniprot
Match: A0A5J4XQC8_9CHLO (WW domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XQC8_9CHLO) HSP 1 Score: 90.1 bits (222), Expect = 9.840e-15 Identity = 58/177 (32.77%), Postives = 89/177 (50.28%), Query Frame = 3
Query: 1998 TISVPQNVVGWVIGKAGIRIIQLQERTNAAMWIDQNFPNGHARKLHIYGKSSEVEAAVAEVEYLIKSAPINNARRVIPTSEGGAPSCLPPGHPDTPPNSSVSKTHAHKVILCPHSLVGLLIGKKGATIMKIKSDSNANVEVNQNFPEGVPREVDITGAPGSVNLAVTMVEEIIASGN 2528
++ P +VG +IG+ G I LQ+ + A + +DQNFP GH RK++I G++ VE A V LI+ P +A +I G L CP +VG +IGK G TI ++ + AN++++Q +P ++ I+G P SV A +V EI+A GN
Sbjct: 216 SVECPPGIVGRIIGRGGETIRALQQASQAYIVVDQNFPEGHPRKVNISGRADAVERASRMVTELIQGEP-GSATAIIQKYGAGVTRNLD----------------------CPKEMVGRVIGKGGETIKAMQREFQANIQIDQT---SLPMKITISGQPASVERAYGVVAEIVAGGN 366
BLAST of mRNA_F-serratus_M_contig64.17323.1 vs. uniprot
Match: A0A836BSU0_9CHLO (WW domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BSU0_9CHLO) HSP 1 Score: 89.7 bits (221), Expect = 1.240e-14 Identity = 70/212 (33.02%), Postives = 98/212 (46.23%), Query Frame = 3
Query: 1926 YANNGPGYASFKPPSIPDGKQPDTTISV---PQNVVGWVIGKAGIRIIQLQERTNAAMWIDQNFPNGHARKLHIYGKSSEVEAAVAEVEYLIKSAPINNARRVIPTSEGGAPSCLPPGHPDTPPNSSVSKTHAHKVILCPHSLVGLLIGKKGATIMKIKSDSNANVEVNQNFPEGVPREVDITGAPGSVNLAVTMVEEIIASGNRADASTVV 2552
Y + G S P++ G + + V P + VG VIG+AG I L+ + + +D + + I GK +V+ V+ LI N PD PP + A K I CPHS+VG +IG+ G TI ++ S A++ VNQ FPEG PR + ITG SV+ A MVEE+I G+ A TVV
Sbjct: 101 YPSGGSEVPSMLSPALLGGLDLPSAVEVVMCPPDRVGRVIGRAGATIRDLEGSSGCRIQVDHKAMGD--KPVTISGKREDVDRVKRTVQDLIAGRSAN---------------------PDAPPAAG----EAQKQIECPHSVVGRVIGRGGETIRTLQQASGAHIHVNQEFPEGTPRMITITGNQDSVDRAAAMVEELI-RGDHASTQTVV 284
BLAST of mRNA_F-serratus_M_contig64.17323.1 vs. uniprot
Match: A0A835SK22_9CHLO (WW domain-containing protein n=2 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SK22_9CHLO) HSP 1 Score: 89.7 bits (221), Expect = 1.420e-14 Identity = 58/173 (33.53%), Postives = 91/173 (52.60%), Query Frame = 3
Query: 1998 TISVPQNVVGWVIGKAGIRIIQLQERTNAAMWIDQNFPNGHARKLHIYGKSSEVEAAVAEVEYLIKSAPINNARRVIPTSEGGAPSCLPPGHPDTPPNSSVSKTHAHKVILCPHSLVGLLIGKKGATIMKIKSDSNANVEVNQNFPEGVPREVDITGAPGSVNLAVTMVEEII 2516
T+ P + VG VIG+AG I L+ T + +D P + + I G++ EVE A +V LI + GG P+S+ + A K + CP +VG +IG+ G TI ++ S A++ VNQ+FP+GVPR++ ITG+ +V+ A +MV+E+I
Sbjct: 125 TVMCPPDKVGRVIGRAGATIRDLEASTGTRIQVDHKAPGD--KPVTISGRADEVERAKRQVLDLI-------------SGHGGXXXXX-----XXXPDSAPAPGEAQKSLECPQGIVGRVIGRGGETIRTLQQASGAHILVNQDFPDGVPRQITITGSQDAVDRAASMVQELI 277
BLAST of mRNA_F-serratus_M_contig64.17323.1 vs. uniprot
Match: A0A8J9SGT6_9CHLO (Probable far upstream element-binding protein 1 at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SGT6_9CHLO) HSP 1 Score: 90.1 bits (222), Expect = 1.550e-14 Identity = 67/185 (36.22%), Postives = 95/185 (51.35%), Query Frame = 3
Query: 2001 ISVPQNVVGWVIGKAGIRIIQLQERTNAAMWIDQNFPNGHARKLHIYGKSSE-VEAAVAEVEYLIKSAPINNARRVIPTSEGGAPSCLPPGHPDTPPNSSVSKTHAHKVILCPHSLVGLLIGKKGATIMKIKSDSNANVEVNQNFPEGVPREVDITGAPGSVNLAVTMVEEIIASGNRADASTVV 2552
I +P +VG +IGK G I QLQ T + ID P G A+K+ I G S E VEAA +VE ++ + + GGA + SV CP +VG +IG+ G TI ++ S A++ V+QN+PEG PR V+I+G P +V AV MV E+I SG A +++
Sbjct: 309 IDIPAPMVGKLIGKGGETIKQLQYSTGTRVQIDHQTP-GEAKKVSITGDSQEAVEAAKKQVEQIVT---------LDESGTGGA-------------SQSVE---------CPQGIVGRIIGRGGETIRALQQASQAHIVVDQNYPEGEPRRVNISGRPDAVERAVKMVSELI-SGEPGSAQSII 460 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig64.17323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig64.17323.1 >prot_F-serratus_M_contig64.17323.1 ID=prot_F-serratus_M_contig64.17323.1|Name=mRNA_F-serratus_M_contig64.17323.1|organism=Fucus serratus male|type=polypeptide|length=770bp MDHSDIKKWVMSVATRETVATLPEIRRYFNGRVEKVIIDACLVQLHNNFRback to top mRNA from alignment at F-serratus_M_contig64:823453..880530+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig64.17323.1 ID=mRNA_F-serratus_M_contig64.17323.1|Name=mRNA_F-serratus_M_contig64.17323.1|organism=Fucus serratus male|type=mRNA|length=57078bp|location=Sequence derived from alignment at F-serratus_M_contig64:823453..880530+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig64:823453..880530+ >mRNA_F-serratus_M_contig64.17323.1 ID=mRNA_F-serratus_M_contig64.17323.1|Name=mRNA_F-serratus_M_contig64.17323.1|organism=Fucus serratus male|type=CDS|length=4620bp|location=Sequence derived from alignment at F-serratus_M_contig64:823453..880530+ (Fucus serratus male)back to top |