mRNA_F-serratus_M_contig64.17309.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig64.17309.1 vs. uniprot
Match: D8LI31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI31_ECTSI) HSP 1 Score: 392 bits (1006), Expect = 2.280e-125 Identity = 284/588 (48.30%), Postives = 326/588 (55.44%), Query Frame = 1
Query: 4 WAASSADPLAHQVDHPFRNVAAWLRQVSPDLRSTDAKTISRGITVLSNSQRYVKSFDGIAYEVQGKLQEGATTSDIDAIRKEAELYESKASAKKAAKLVELLVEVESALNAAEAAEIASQFDGAVMARYMRDAGLRFLTVSPMPRQEDIENTDSDAFPEAVGVDR-------------EGITKTPHASGVSDGARAADRQGRKRGSKFARTPAGTARRSSRSKEGDHDDGDSSACDGXXXXXXXXRTKMSREPQPRGERAGTEDKGKKQGERDAGEENPLEVFINVVAAGCDVQCLVMVDDRNE-----RLVVAVGDALTGEALLGSLFEEPAVVRLASHGLMRETAYVNRAVFQCACDILERAGPAIKASIEAGGAFEGYRLHCTGHSFGGAVAACLAGLLEGAIDVEAAESRGNGLKRGRPRREGENDGEDGDESTPPRGKVDSDAKGPRKPGVSARGKKRDASESFSGREGHERGQEGEEEVVLKVDEAALWVGLCADKVTCVTLGCPPCLSPNLKLSFVTSFVLGDDMVPRTSRESLRRLKQRLLQASERARTGLLSQGVAFGTSLFTDVAGVAMQGARQVKVL 1713
W A +ADP Q +HPFRN+AAWLR+ SPD+RS + K ISRGITVLSNSQ YVKSFDG+AYE++GK++E +T+DI+ + +AELYES +S KKA KLV LL+EVE ALN+AEAAEIASQ D + A+YM+DAGLRFL P P G T+ XXXXXXXX GE PLE F+ V AGC+V+C +M+D+R RLVVAVGD+LTGEALL SLFEEPAVV+LASHGLMRETAYVNR FQCACDILE AGP IKAS+E GGAFEGYR+HC GHSFGGAVAACLAGLL+GAIDVE P +G ++VD A WVG+ D VTCVTLGCPPCLS NL+L FVTSFVLGDDMVPRTS ESLRRLK+RLLQ + + GLLSQGVAF TSLFTDVAGVAMQG RQ L
Sbjct: 21 WVALAADPSLQQAEHPFRNLAAWLREASPDMRSAEPKAISRGITVLSNSQSYVKSFDGMAYELKGKIKETGSTADIEKLTGQAELYESASSVKKANKLVRLLIEVERALNSAEAAEIASQSDPSRAAQYMKDAGLRFL---PDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGPTRVSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGE--PLEAFV-VNVAGCEVRCFLMLDERGGEEGEGRLVVAVGDSLTGEALLESLFEEPAVVQLASHGLMRETAYVNRVAFQCACDILEWAGPFIKASVEPGGAFEGYRVHCAGHSFGGAVAACLAGLLDGAIDVE-------------PSGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRVDGAEPWVGIRRDGVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQVMPKGK-GLLSQGVAFSTSLFTDVAGVAMQGVRQATTL 588
BLAST of mRNA_F-serratus_M_contig64.17309.1 vs. uniprot
Match: A0A835YUE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE7_9STRA) HSP 1 Score: 148 bits (374), Expect = 4.360e-35 Identity = 170/521 (32.63%), Postives = 230/521 (44.15%), Query Frame = 1
Query: 178 IAYEVQGKLQEGA-TTSDIDAIRKEAELYESKASAKKAAKLVELLVEVESALNAAEAAEIASQ--FDGAVMARYMRDAGLRFLTVSPMPRQEDIENTDSDAFPEAVGVDREGITKTPHASGVSDGARAADRQGRKRGSKFARTPAGTARRSSRSKEGDHDDGDSSACDGXXXXXXXXRTKMSREPQPRGERAGTEDKGKKQGERDAGEENPLEVFINVVAAGCD----------VQCLVMVDDRNERLVVAVGDALTGEALLGSLFEEPAVVRLASHGLMRETAYVNRAVFQCACDILERAGPAIKASIEAGGAFEGYRLHCTGHSFGGAVAACLAGLLEGAIDVEAAESRGNGLKRGRPRREGENDGEDGDESTPPRGKVDSDAKGPRKPGVSARGKKRDASESFSGREGHERGQEGEEEVVLKVDEAALWVGLCADKVTCVTLGCPPCLSPNLKLSFVTSFVLGDDMVPRTSRESLRRLKQRLLQASERARTGLLSQGVAFGTSLFTDVAGVAMQGARQ 1701
+AYEV G++ + + TT+D+ A+R+EA S + A KL+ELLVE+E AL+AAE E A+ + A Y AG ++ + +P + V A SD A+AA +QG K AG A SK G D++A +++ P P+ V AG D V C ++ + + +R+V A+ D L G ALL +L P + LA+ GL+ ET + AV+ A +L PA+ + + A G + GHSF GAVAA AGLL+GA+ VE RR GKV S A+ K G S R K G G +G + +VG +V CVT GCPPC+S L VTSFVLGDDMVPR S +SL +LK+RL Q R +G Q +A GT+LFTDVAGVA QG RQ
Sbjct: 1 MAYEVGGRMSKSSLTTADVHAVREEALATGSASVESDALKLMELLVEIEKALSAAEIVECAAADLANPDTAADYAAQAG--YVPLPAVPXXXXXXXXXXXXXXQTV------------ADASSDAAQAAMQQGDK-------DNAGDATAGPDSKGGAFTAADAAA--------------LAQLP-------------------------PVPPVTIPVPAGGDTGSSSSSSGAVHCRLLYNAQGKRVVAALADDLGGGALLRALSAAPIALPLAARGLLHETLHTAPAVWAAAHALLAAIAPAVLNFLRSP-AGAGATVLFVGHSFAGAVAAVAAGLLDGALAVEGGGGSXXXXXXXSGRRS--------------EGKVGS-AEARCKGGSSRRAK------------GVAEGGDGGMXXXXXXXXSGGYVGAARGRVKCVTFGCPPCVSGAAALPCVTSFVLGDDMVPRVSAQSLEQLKRRLRQVLPRG-SGFFGQSLAMGTTLFTDVAGVAAQGLRQ 432
BLAST of mRNA_F-serratus_M_contig64.17309.1 vs. uniprot
Match: K8ZAB7_NANGC (Fructose-bisphosphate aldolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZAB7_NANGC) HSP 1 Score: 89.7 bits (221), Expect = 5.510e-15 Identity = 92/316 (29.11%), Postives = 136/316 (43.04%), Query Frame = 1
Query: 805 EVFINVVAAGCDVQCLVMVDDRNERLVVAVGDALTGEALLGSLFEEPAVVRLASHGLMRETAYVNRAVFQCACDILERAGPAIKASIEAGGAFEGYRLHCTGHSFGGAVAACLAGLLEGAIDVEAA----ESRGNGLKRGRPRREGENDGEDGDESTPPRGKVDSDAKGPRKPGVSARGKKRDASESFSGREGHERGQEGEEEVVLK-------VDEAALW-------VGLCADKVTCVTLGCPPCLSPNLK--LSFVTSFVLGDDMVPRTSRESLRRLKQRLLQ-ASERARTGLLSQGVAFGTSLFTDVAGVAMQ 1689
E F++V G + L++VD + RL ++VGD+LT L L V L GL+R + VN ++ A ++ER + ++ GY LH G S GG+V A +AG+L+G+I VE A +R + +RGR R G + P EG GQ+G +E + + W GL D VT PC+S N++ F TSF+LGDDM+PR + S++RL++RLL SE TG+ + S V G +Q
Sbjct: 208 EDFLSV--EGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPSLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRE--TCPGYALHVVGFSLGGSVGALVAGVLDGSIFVEGAVPAPPTRRSHTRRGRGARAGV--------AVPD--------------------------------EGEAEGQDGAKEASISPAXXXXPTSPTSSWPQALRGATGLAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFD---YARSWMKGVVGATLQ 476
BLAST of mRNA_F-serratus_M_contig64.17309.1 vs. uniprot
Match: A0A4D9DDN3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDN3_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 5.870e-13 Identity = 91/310 (29.35%), Postives = 134/310 (43.23%), Query Frame = 1
Query: 793 ENPLEV----FINVVAAGCDVQCLVMVDDRNERLVVAVGDALTGEALLGSLFEEPAVVRLASHGLMRETAYVNRAVFQCACDILERAGPAIKASIEAGGAFEGYRLHCTGHSFGGAVAACLAGLLEGAIDVEAA----ESRGNGLKRGRPRREGENDGEDGDESTPPRGKVDSDAKGPRKPGVSARGKKRDASESFSGREGHERGQEGEEEVVLKVDEAALWVGLCADKVTCVTLGCPPCLSPNLK--LSFVTSFVLGDDMVPRTSRESLRRLKQRLLQ-ASERARTGLLSQGVAFGTSLFTDVAGVAMQ 1689
++P EV F++V G + L++VD + RL ++VGD+LT L L P V L GL+R + VN ++ A ++ER + + E Y LH G S GG+V A +AG+L+G I VE A +R + +RGR R G E+G+ S+ A + GL D VT PC+S N++ F TSF+LGDDM+PR + S++RL++RLL SE TG+ + S V G +Q
Sbjct: 229 QSPQEVLAEDFLSV--EGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPPLTVPLRPRGLLRRSMMVNPRLWAAAATVIERVRAVLTTARET---CPNYALHVVGFSLGGSVGALVAGVLDGTIFVEGAVPAPPTRRSHTRRGRAARAGVAVPEEGEXXXXXXXXXXXXXXXXXXXXXSSTSSWAHALRGAT--------------------------GLAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFD---YARSWMKGVVGATLQ 504
BLAST of mRNA_F-serratus_M_contig64.17309.1 vs. uniprot
Match: A0A7S2ESR1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ESR1_TRICV) HSP 1 Score: 64.3 bits (155), Expect = 9.560e-9 Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 1438 GLCADKVTCVTLGCPPCLSPNLKLSFVTSFVLGDDMVPRTSRESLRRLKQRLLQASERARTGLLSQGV-AFGTSLFTDVAGVAMQGAR 1698
GL + + V LG PP LSPN++ S+VTS + GDD+VPR+SR SL RL+ R+ ++ + G+L + V A G D A +A +G R
Sbjct: 23 GLALGRSSAVALGPPPILSPNVRASYVTSILHGDDVVPRSSRRSLDRLRSRV---NKTLKAGVLGKAVSAAGIGWIGDAASLAAEGLR 107
BLAST of mRNA_F-serratus_M_contig64.17309.1 vs. uniprot
Match: B8C205_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C205_THAPS) HSP 1 Score: 59.7 bits (143), Expect = 1.100e-5 Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 1417 DEAA--LWVGLCADKVTCVTLGCPPCLSPNLKLSFVTSFVLGDDMVPRTSRESLRRLKQRLLQASERARTGLLSQGVAFGTSLFTDVAGVAMQGAR 1698
DE+A W G D+V+ + LG PPC+S NLK SFV S + GDD+V R ++ +L RL ERAR G + TDV + + G +
Sbjct: 412 DESASRTWSGCARDRVSAICLGPPPCISSNLKPSFVKSIIHGDDIVSRATQATLDRLY-------ERARRGCSGGVLGRSVGWMTDVVSLTVSGMK 500
BLAST of mRNA_F-serratus_M_contig64.17309.1 vs. uniprot
Match: A0A7S2S0W5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S0W5_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.470e-5 Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 1438 GLCADKVTCVTLGCPPCLSPNLKLSFVTSFVLGDDMVPRTSRESLRRLKQRLLQASERARTGLLSQGVAFGTSLFTDVAGVAMQGAR 1698
G + + V LG PPCLSPN+K S+VTS V GDD+V RT+ +S+ RL +R ++A + L+Q A+ TD + M R
Sbjct: 4 GFGKGRTSAVVLGPPPCLSPNVKASYVTSLVHGDDIVCRTTPQSMDRLYRRTVRAYNK-NNNPLTQSFAW----MTDTLSLTMSNIR 85 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig64.17309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig64.17309.1 >prot_F-serratus_M_contig64.17309.1 ID=prot_F-serratus_M_contig64.17309.1|Name=mRNA_F-serratus_M_contig64.17309.1|organism=Fucus serratus male|type=polypeptide|length=572bp FWAASSADPLAHQVDHPFRNVAAWLRQVSPDLRSTDAKTISRGITVLSNSback to top mRNA from alignment at F-serratus_M_contig64:318102..324048+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig64.17309.1 ID=mRNA_F-serratus_M_contig64.17309.1|Name=mRNA_F-serratus_M_contig64.17309.1|organism=Fucus serratus male|type=mRNA|length=5947bp|location=Sequence derived from alignment at F-serratus_M_contig64:318102..324048+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig64:318102..324048+ >mRNA_F-serratus_M_contig64.17309.1 ID=mRNA_F-serratus_M_contig64.17309.1|Name=mRNA_F-serratus_M_contig64.17309.1|organism=Fucus serratus male|type=CDS|length=3432bp|location=Sequence derived from alignment at F-serratus_M_contig64:318102..324048+ (Fucus serratus male)back to top |