mRNA_F-serratus_M_contig64.17301.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig64.17301.1
Unique NamemRNA_F-serratus_M_contig64.17301.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig64.17301.1 vs. uniprot
Match: D8LI36_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI36_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 3.520e-40
Identity = 68/84 (80.95%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    1 GGKKRGGELTFDLKGQQFSGQIIPSATVLVVGVGRTEAKIEGVFSEVCRLDYKRNVLEAMGGEVLKGEMDKSYIYEEEDVNVHG 252
            GGKK+G  LTFDLKGQQFSGQIIPSATV+VVG+G+TEAK+EG+FSEVCRLDYK NV +AMGGEVLKGEMD SY +EEEDVN  G
Sbjct:   99 GGKKKGRGLTFDLKGQQFSGQIIPSATVMVVGIGKTEAKVEGLFSEVCRLDYKGNVFDAMGGEVLKGEMDDSYKFEEEDVNARG 182
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig64.17301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI36_ECTSI3.520e-4080.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig64contigF-serratus_M_contig64:206288..208469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBIN4 component of topoisomerase VI
Ec32 orthologEc-04_003090.1
Exons3
Model size259
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig64.17301.1prot_F-serratus_M_contig64.17301.1Fucus serratus malepolypeptideF-serratus_M_contig64 206288..208469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931974.4401758-CDS-F-serratus_M_contig64:206287..2063301622931974.4401758-CDS-F-serratus_M_contig64:206287..206330Fucus serratus maleCDSF-serratus_M_contig64 206288..206330 +
1690964084.0296226-CDS-F-serratus_M_contig64:206287..2063301690964084.0296226-CDS-F-serratus_M_contig64:206287..206330Fucus serratus maleCDSF-serratus_M_contig64 206288..206330 +
1622931974.4858873-CDS-F-serratus_M_contig64:206902..2070581622931974.4858873-CDS-F-serratus_M_contig64:206902..207058Fucus serratus maleCDSF-serratus_M_contig64 206903..207058 +
1690964084.0440755-CDS-F-serratus_M_contig64:206902..2070581690964084.0440755-CDS-F-serratus_M_contig64:206902..207058Fucus serratus maleCDSF-serratus_M_contig64 206903..207058 +
1622931974.510976-CDS-F-serratus_M_contig64:208410..2084691622931974.510976-CDS-F-serratus_M_contig64:208410..208469Fucus serratus maleCDSF-serratus_M_contig64 208411..208469 +
1690964084.0603852-CDS-F-serratus_M_contig64:208410..2084691690964084.0603852-CDS-F-serratus_M_contig64:208410..208469Fucus serratus maleCDSF-serratus_M_contig64 208411..208469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig64.17301.1

>prot_F-serratus_M_contig64.17301.1 ID=prot_F-serratus_M_contig64.17301.1|Name=mRNA_F-serratus_M_contig64.17301.1|organism=Fucus serratus male|type=polypeptide|length=86bp
GGKKRGGELTFDLKGQQFSGQIIPSATVLVVGVGRTEAKIEGVFSEVCRL
DYKRNVLEAMGGEVLKGEMDKSYIYEEEDVNVHGRG
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mRNA from alignment at F-serratus_M_contig64:206288..208469+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig64.17301.1 ID=mRNA_F-serratus_M_contig64.17301.1|Name=mRNA_F-serratus_M_contig64.17301.1|organism=Fucus serratus male|type=mRNA|length=2182bp|location=Sequence derived from alignment at F-serratus_M_contig64:206288..208469+ (Fucus serratus male)
GGGGGGAAGAAGAGGGGCGGGGAACTGACGTTCGACCTCAAAGGTACAGT
ACCATCGCTTGACATGATCAACTACTGTACATATTATAAATAATAAAGTA
CCTAATATAGTACGTTTGTAATGTGGTACTTGCGTCTTTCCACGTTTTAT
TTGTACTGTTAAATGAGTACAGCTGTGTTGAAACTTATTACGATAGAGCT
CTACAGCAGTAATAACGTAATATACTGTAATATAATATTAGTAATACGTA
ATGTAATATTAGTAATACGGTATTAGTAATATACGGTATGATATTTTCTT
ACCCCGCCGTCTGATTGATTTGCTTCGTGTAAAGAACGATCACTGTTCAG
CTGACCACGAGCAGGACTGGCAACCTTACCCGATTGATCCCTACCCTGCT
AATAAGTCATAACCATAGAGCATACTGGACATACTGTATGCTATTAATAT
TAATAATGTATGCCCCGACAAGGCCCCGTTGGATTCTGACCACCATTCTC
GAGAAGCCAATGGACCTGCCCGTTAGAAAGCTATTAAATATTAATAAAGC
ATTTCTGAACCCGTCCCCGTCCCCCCCCCAAAAAAAACGACAACTGGATG
CTCGTCTCGAACCAGGGCAACAATTCAGTGGCCAGATCATCCCTAGCGCG
ACGGTGTTGGTTGTCGGTGTCGGGCGCACCGAGGCCAAGATAGAGGGGGT
TTTTAGCGAGGTCTGCCGCCTCGACTACAAACGCAATGTCCTGGAAGCCA
TGGGTGGAGAGGTTCTCAAAGGTGAGCGTGTAGTCTCTATATAGAGCGAA
GGAGAAGGGATTGTGGAGAAACGTCAAGGTCGTGACTCTGCGGCTGCTGC
AACTAAGCGATACCCTGGGTATAAGACGGGTTTGCTCCAACCACACTGCA
GCGTGCGGGCTGCGTGCGAGCGCGCTCGGCTGCGGTGACGCAGAGGACCA
CTGTGCCCCTTGACTCGGCTCCGTCCTTTCTGCCTCACGTCGCGACGACT
GAGCCAAGCGCGGCATTTTTTTATGCTTGTGCTTGTACAAAAACCGAACG
AACCGCTGTGATGTGCATATAAGATCATCCATCACCTTCAGCAGACTGGG
CGTCAACCGGGATGGTTGCCAGTGCTTCTTGTGGTCAGCTGAGCCGGGAA
AATGAATTTTCCCCGTCCCCGTTCACGCCTGAAAAAATGATCTCGTGAGA
CGGGTTCGGCCGTCCCGTCCCGCGTCAGCATGGTCGTTCTCCACACCCAG
GCTGAATATGATGCTTGCTCACGGGCTCCTCTCCTTTTTCTCGCTTTCCG
CGACTAAGGCGTCTATCTATAACGCCAACCACCAAATGACCAAATGGGTC
GGTCCCGAGTTTATCGGTTCACGCAAATGCGCACCGATGGCGTTCACCGC
CGAGAGTCCACCTGCACAGGGCCAGCAGTCCTCGCGATAGCTCAAATAAC
GGGTGCGCCCATTTAGGAAACCCCTTGGAATAATTTTTGCCGCCCCTCAG
TTCCCACATCCACTATACTATACTGTATCGGAGGCGGTTGTGGAGAGGGA
TGCTGCCTCGGGGCACAGTGTCCAACAACCACTTGGGTGGGGCTCCCACT
CTTCCGAGCCTTTCTGGGCCATTTGCCGCCCCACCCTGGCCTCGGCGTGG
AGGACCGTTTGTAAAATGAGCACGCTTTGACTCCGCTCACCCGCTCTGCT
GAACTCGCATGGCGATCTTTACAAAAAAATGCACGCGAGGGAAACGGGGA
GAGATGGGGAAGAAGACCCCCTTGGTGGCCAATAAAAGGCAAAAAGGCTG
GATGGTAAAGCTGCTGTATTAGTATTTAGCGTTCAATATTTAATACCTCG
ACAGGTATTAATAAGTATAATAGTACAGTAGTATTGACCAAGTGGGGAAT
AAAGCGAGGTAACCGTTTAGCTCTAATCGGCAGAAAATAATACCAGTATA
CAAAACAACCCCCTCCCCCCCCCCCCCCCCCCGAAAAAAATAAAAATAAA
TATATATATATATATTTATCATATAAGTACTTGTACTGTACTGGTTTTAA
TAAGCTGCCCATGGCACCGGTGTGTGAAATCGCCTGACGCATCCATTTCT
CAACGGCTGTGCCCCCTTGACAGGAGAAATGGACAAATCCTACATATATG
AGGAAGAAGATGTCAATGTGCATGGGCGAGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig64:206288..208469+

>mRNA_F-serratus_M_contig64.17301.1 ID=mRNA_F-serratus_M_contig64.17301.1|Name=mRNA_F-serratus_M_contig64.17301.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig64:206288..208469+ (Fucus serratus male)
GGGGGGAAGAAGAGGGGCGGGGAACTGACGTTCGACCTCAAAGGGGGGGA
AGAAGAGGGGCGGGGAACTGACGTTCGACCTCAAAGGGCAACAATTCAGT
GGCCAGATCATCCCTAGCGCGACGGTGTTGGTTGTCGGTGTCGGGCGCAC
CGAGGCCAAGATAGAGGGGGTTTTTAGCGAGGTCTGCCGCCTCGACTACA
AACGCAATGTCCTGGAAGCCATGGGTGGAGAGGTTCTCAAAGGGCAACAA
TTCAGTGGCCAGATCATCCCTAGCGCGACGGTGTTGGTTGTCGGTGTCGG
GCGCACCGAGGCCAAGATAGAGGGGGTTTTTAGCGAGGTCTGCCGCCTCG
ACTACAAACGCAATGTCCTGGAAGCCATGGGTGGAGAGGTTCTCAAAGGA
GAAATGGACAAATCCTACATATATGAGGAAGAAGATGTCAATGTGCATGG
GCGAGGAGAGAAATGGACAAATCCTACATATATGAGGAAGAAGATGTCAA
TGTGCATGGGCGAGGA
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