mRNA_F-serratus_M_contig64.17299.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig64.17299.1
Unique NamemRNA_F-serratus_M_contig64.17299.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig64.17299.1 vs. uniprot
Match: D7G5D7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D7_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 3.100e-39
Identity = 103/245 (42.04%), Postives = 139/245 (56.73%), Query Frame = 1 
Query:  478 DIDPLDAGPDIVGSLLEDEDEGIEDQEDGGVYGGETIAAAPSIRKRLGVKASAVVLEEDDXXXXXXXXXXXXXXXXXXXXXXXXXTRK------RGDPFMPKGAPGPLDWREFASLKEGVRGHLVVFHTGFPKDQAVADSLIRQVKERFGDVVHVHEEFDDDEDTTEQERQESNAFEVWLEGPEVIVYHARGECNVDLTEEQMGKILDDLETRVGDESILQIPCTKAPRFLIPGLTPLELQSRSY 1194
            D+DPL+AGPD    LL+ E E +  Q++   Y  E  AA  +          A + E   XXXXXXXXX                 RK      R DP MP+G   P +W + A L EGVRG LVV HTG PKD+  A  ++  VKER+G V+H HE +DDDE+ T+ +R+++  FEVWLEGP ++ YH R +  +DL +EQ+ KILDDLE RV DE+IL     +  +F +PG T  E + + +
Sbjct:    6 DMDPLEAGPDPDEILLQGEPELLRQQQEEEDYEVELAAAEAATVAAGKAPTKAELAEXXXXXXXXXXXXREGGGADEAAMAALGPKRKKRVEKARIDPLMPRGGVAPNEWLDMADLAEGVRGILVVCHTGLPKDKKRAAEIMNAVKERYGHVIHTHEWWDDDEELTDDDREDAGTFEVWLEGPTIVHYHERADGKLDLDDEQLDKILDDLEERVMDEAILGQYINEDFQFRLPGFTVPEQRFKQF 250
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BLAST of mRNA_F-serratus_M_contig64.17299.1 vs. uniprot
Match: A0A6H5JXG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG7_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.480e-37
Identity = 110/297 (37.04%), Postives = 149/297 (50.17%), Query Frame = 1 
Query:  325 ASSPWAGSNRSRTALVARRQRIGLRTAPFPGLT-LGAGMADDDDVDPLEAELDIDPLDAGPDIVGSLLEDEDEGIEDQEDGGVYGGETIAA-APSIRKRLG-----VKASAVVLEEDDXXXXXXXXXXXXXXXXXXXXXXXXXTRKRGDPFMPKGAPGPLDWREFASLKEGVRGHLVVFHTGFPKDQAVADSLIRQVKERFGDVVHVHEEFDDDEDTTEQERQESNAFEVWLEGPEVIVYHARGECNVDLTEEQMGKILDDLETRVGDESILQIPCTKAPRFLIPGLTPLELQSRSY 1194
            ASS  AG  R RT    R +    R      L  LG G  D+ D        DIDPL+ GPD    LL+ E E +  Q+       E  AA A ++    G     +  +AV                                + R DP MP+G   P +W + A+L EGVRG LVV HTG PKD+  A  ++  VKER+G V+H HE +DDDE+ T+ +R+++  FEVWLEGP V+ YH R +  +DL +EQ+ KILDDLE RV DE+IL     +  +F +PG T  E + + +
Sbjct:   79 ASSTLAGHQRRRTPSGGREEVSLPRPRRCRSLQPLGLGGMDEMD--------DIDPLEGGPDPDEILLQGEPELLRQQQXXXXXEAELAAAEAATVAAGKGPTKAELAEAAVXXXMASKTAGEGVGADEVAMAALGPKRKKRAEKVRVDPLMPRGGVAPNEWLDMANLAEGVRGILVVCHTGLPKDKKRATEVMNAVKERYGHVIHTHEWWDDDEELTDDDREDAGTFEVWLEGPTVVHYHERADGKLDLDDEQLDKILDDLEERVMDEAILGQYINEDFQFRLPGFTVPEQRFKQF 367
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig64.17299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5D7_ECTSI3.100e-3942.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXG7_9PHAE1.480e-3737.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig64contigF-serratus_M_contig64:198996..202299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_008690.1
Exons4
Model size1688
Cds size1014
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig64.17299.1prot_F-serratus_M_contig64.17299.1Fucus serratus malepolypeptideF-serratus_M_contig64 199478..202107 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931974.2578616-UTR-F-serratus_M_contig64:198995..1994771622931974.2578616-UTR-F-serratus_M_contig64:198995..199477Fucus serratus maleUTRF-serratus_M_contig64 198996..199477 -
1690964083.969064-UTR-F-serratus_M_contig64:198995..1994771690964083.969064-UTR-F-serratus_M_contig64:198995..199477Fucus serratus maleUTRF-serratus_M_contig64 198996..199477 -
1622931974.3930602-UTR-F-serratus_M_contig64:202107..2022991622931974.3930602-UTR-F-serratus_M_contig64:202107..202299Fucus serratus maleUTRF-serratus_M_contig64 202108..202299 -
1690964084.0194952-UTR-F-serratus_M_contig64:202107..2022991690964084.0194952-UTR-F-serratus_M_contig64:202107..202299Fucus serratus maleUTRF-serratus_M_contig64 202108..202299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931974.308044-CDS-F-serratus_M_contig64:199477..1997621622931974.308044-CDS-F-serratus_M_contig64:199477..199762Fucus serratus maleCDSF-serratus_M_contig64 199478..199762 -
1690964083.981306-CDS-F-serratus_M_contig64:199477..1997621690964083.981306-CDS-F-serratus_M_contig64:199477..199762Fucus serratus maleCDSF-serratus_M_contig64 199478..199762 -
1622931974.3297482-CDS-F-serratus_M_contig64:200330..2004201622931974.3297482-CDS-F-serratus_M_contig64:200330..200420Fucus serratus maleCDSF-serratus_M_contig64 200331..200420 -
1690964083.9899428-CDS-F-serratus_M_contig64:200330..2004201690964083.9899428-CDS-F-serratus_M_contig64:200330..200420Fucus serratus maleCDSF-serratus_M_contig64 200331..200420 -
1622931974.3570402-CDS-F-serratus_M_contig64:200743..2012831622931974.3570402-CDS-F-serratus_M_contig64:200743..201283Fucus serratus maleCDSF-serratus_M_contig64 200744..201283 -
1690964084.0010602-CDS-F-serratus_M_contig64:200743..2012831690964084.0010602-CDS-F-serratus_M_contig64:200743..201283Fucus serratus maleCDSF-serratus_M_contig64 200744..201283 -
1622931974.377062-CDS-F-serratus_M_contig64:202008..2021071622931974.377062-CDS-F-serratus_M_contig64:202008..202107Fucus serratus maleCDSF-serratus_M_contig64 202009..202107 -
1690964084.0104365-CDS-F-serratus_M_contig64:202008..2021071690964084.0104365-CDS-F-serratus_M_contig64:202008..202107Fucus serratus maleCDSF-serratus_M_contig64 202009..202107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig64.17299.1

>prot_F-serratus_M_contig64.17299.1 ID=prot_F-serratus_M_contig64.17299.1|Name=mRNA_F-serratus_M_contig64.17299.1|organism=Fucus serratus male|type=polypeptide|length=338bp
MPSSRPAIMSLTALSALWPSSGFISTPSAISKQTTQLRRSSRFSASSPWA
GSNRSRTALVARRQRIGLRTAPFPGLTLGAGMADDDDVDPLEAELDIDPL
DAGPDIVGSLLEDEDEGIEDQEDGGVYGGETIAAAPSIRKRLGVKASAVV
LEEDDADAASMAALAAAAKDTAGKSQKKKKTRKRGDPFMPKGAPGPLDWR
EFASLKEGVRGHLVVFHTGFPKDQAVADSLIRQVKERFGDVVHVHEEFDD
DEDTTEQERQESNAFEVWLEGPEVIVYHARGECNVDLTEEQMGKILDDLE
TRVGDESILQIPCTKAPRFLIPGLTPLELQSRSYYPL*
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mRNA from alignment at F-serratus_M_contig64:198996..202299-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig64.17299.1 ID=mRNA_F-serratus_M_contig64.17299.1|Name=mRNA_F-serratus_M_contig64.17299.1|organism=Fucus serratus male|type=mRNA|length=3304bp|location=Sequence derived from alignment at F-serratus_M_contig64:198996..202299- (Fucus serratus male)
CCAAAGGCGAGCCTTGTTTGAGCAGCGAAGCACGTGTCAATCGTACACTG
AAAAACGGCAGTAAGTTTCGCTCGAGATCCACTTCATAACAAATCCCTCG
AAGTCCGTACGACAGAGCTGTGCACGCTGCCTTCGAACTCTGCTGTGGGT
TCTGCTGCTCTTAACTGTTCATAACTGAATGAGACAGCAAGCATGCCTTC
GAGTAGGCCGGCGATCATGAGCCTGACGGCACTGAGCGCCTTGTGGCCCA
GTTCAGGCTTTATCAGCACCCCTTCGGCAATATCAAAACAGGTGGGTACC
GAGAGCTCTCATTCTCTCCGCGTTCAAACACGTTTCTAGATGTTGGTTGC
GTGCGACTCTTCAGCAGCAGAGCACTTTTACTACGGATATGGTATTTACT
GCCTCACATGTTCTTGTACACGTATAAGTATCTACTTCTCCCTACAGCAG
AGCTACGAGTACCTTTGACTCGACTTCTGCTTTTGTAACTGAAGTACTAC
TACTGCTTGTATGCACAACAGCACCTAGAGGTTTTGTATTTGCAGCCTTT
GAGCCGACCTGAACATTTTGACATTTTTTCCCCCTGACTGGGGGATGCTC
AGAAGGTCTAGGTGCGTTCTGTATTTTCTTCAAGCACCTAGACATAGCCT
GTTTATTGTCATCTTTATACCTGTGGTGCATAAGAGACGTTGCCGGTAGG
TACAGTACAAGGTGGTATTATACAGTATTAATAGCATCTTTGGATTTAAA
ATGGCACAAACATGACGGTAGCATTACAACTATCACTGACCGTGTAAACC
TTTCCAGGGAGAAGCTCATTTGATAACACCAAGCTAAAGAATGAGCGACA
GATCCCACGCTGCGAGCCTCTCGCTGTTGATTTGATCCCCCAAGACACCA
ATCACTGCGGAATTCCGAGTGAGCCCCGCACGGTCTCTCTAGATCCTCAG
GGTTTCCCTTTGCTTTGGGCATGCTTCCACCTCCCTCCCTTCCATCCCTT
CCCTCCCTCCCTTTAGACCACCCAGCTACGAAGATCGTCTCGCTTTTCGG
CATCCTCGCCTTGGGCAGGATCAAACCGTAGCCGAACGGCTCTCGTCGCG
AGACGGCAACGAATCGGTCTTCGAACCGCGCCCTTCCCCGGACTGACATT
AGGCGCAGGGATGGCCGACGATGATGATGTAGATCCGTTGGAAGCAGAGC
TTGACATAGACCCCCTGGACGCCGGGCCAGATATTGTAGGATCCTTGCTC
GAGGACGAGGACGAGGGAATTGAGGATCAGGAAGATGGCGGGGTCTACGG
CGGCGAAACCATCGCTGCGGCGCCCTCGATAAGAAAACGGTTGGGGGTGA
AGGCGTCCGCCGTGGTCCTCGAAGAGGATGACGCCGACGCGGCGTCAATG
GCGGCGTTGGCCGCCGCCGCTAAGGACACCGCGGGAAAGTCTCAGAAGAA
GAAGAAGACGCGGAAGAGGGGCGATCCATTCATGCCGAAGGGCGCTCCTG
GGCCACTCGACTGGCGAGAATTTGCTTCTCTTAAGGAGGGTGTTCGGGGG
CACCTGGTGAGGGGCGAAGCGACGAGAAAACTCGATAAAGGAGTAGGGCT
ATTGGTGAAATCAGGAAGGATGCCGGCGACGCTTGAGGTTGCCGGGATGC
ACTTGATAGGGGCGGGAGGCGTTAGAGGCTGGGAATCCTTTATGGGAGTG
GTACCCTCCGTGCCCAACATTCTAGTGTTTTGAAGGCCTTCCTTGGGAAG
TCAGGGTTCACAGGTTGGAGCTGTCGTTGAATAAACAGTTGTTGGGACTC
CACGGTGTTGCACTTGCTACAACCTGAGAGTCCCGTCGGTATGCTTTTTT
TAAGCCAGCCGTGTTATGTACCGTGCCAGGTGGTGTTTCACACCGGCTTT
CCCAAGGACCAGGCGGTGGCCGATAGCCTCATTCGCCAGGTCAAGGAGCG
CTTCGGCGACGTCGTTCACGTGAGTACTGGTAGTTTGTCATGTTCGTTCG
AGTTACTGGGAGACTTCACAGTGATGCTTTGCATAAAAAACCTGAGCGTG
TTGTAGGAGGCGCGAACCGTTCGTTATATCGCAGAATGTGCAAGCTGTTC
CTATGACGAATCTCGACGCTGTCATTTCGGTGTTGTCTATGGAACGCCGG
CACTCCCGCCGTGAGAAGGTGGTAACCTACCTCATGGGCTTATCGAGTCA
TATTCGAGCTTGAGGTACTCGTACGAGAATGGGGGAGGGGAAACCGGTCA
ATCGCTTTTGAGTTAAATTTACAGGTCGAAGCAACTCATCGGGGAGGATC
GTGTGATCACGTTTTGTTCTGTGTGAAATATTCAAAACTCTTTTGGGACG
GTCTAATGCAAGACTATTTTGCACTGCGTGCGCTCCTCCTGTTGTGACAT
TTGCCACAAGCTAGCACTGCAAGCCGTTGACGTGGGATAGTGTATGTGTG
TTCAGCTCCAAAGCATCTATTAATAGAATGAGGCAAGATGTTTCTACCGT
CCCAGAAAACCCATCGCTAACGAACACGTTCAAGCAGGTGCACGAAGAAT
TCGACGATGACGAAGACACGACAGAACAAGAACGCCAGGAGTCGAACGCC
TTCGAGGTCTGGCTCGAGGGACCGGAGGTTATCGTCTACCATGCGAGAGG
AGAGTGCAACGTGGACTTGACCGAGGAACAAATGGGTAAAATCTTAGATG
ACCTCGAGACGCGCGTGGGGGACGAATCCATCCTCCAGATCCCGTGCACC
AAGGCGCCACGGTTCTTGATACCCGGCCTGACGCCCCTAGAACTTCAGTC
CAGATCCTACTACCCGCTGTAGTGACACTCACAGCCACGTTACGTTTTGG
TTAACATTGAGCGCGCGTGTGTGGGCGGTTATCTTTTTCTTGCTCGACTC
TTTTGTTTCTATAGCTCGCTTCCCGGTGGTCTCGTCGCAGCCCTTAATAG
TTCGATCAGGGGCGTCTCCACCCTACCGTCAGCCATCGTGCGCTGACTAT
TCATTCCTTCGATAGGTATCACGTCAAGCTCAAGTCTCAGTGTTGATTTT
AGATGAATGACGGGGGATACCTTTAACGAAGGCCTAGAGTTTTTGAGTCG
TTTGCTCCAGCTTCGGGTGTTGTAGCTTTTCGCTTCCGCTTCAGAAGATC
TCGAGCTAGACTGCAACTGGTCAAAGGAGGGTATGCCTGGCCGCAGGAGG
ATATGCCGTACACTCTACTCGTATCTAGTGTCCTGCCTTGTTGCCTAAGA
AGGGAGCCGATGCGCTGCGCATTCAACCATTAATCAAAGCCGCGGGGATC
GACA
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Coding sequence (CDS) from alignment at F-serratus_M_contig64:198996..202299-

>mRNA_F-serratus_M_contig64.17299.1 ID=mRNA_F-serratus_M_contig64.17299.1|Name=mRNA_F-serratus_M_contig64.17299.1|organism=Fucus serratus male|type=CDS|length=2028bp|location=Sequence derived from alignment at F-serratus_M_contig64:198996..202299- (Fucus serratus male)
ATGCCTTCGAGTAGGCCGGCGATCATGAGCCTGACGGCACTGAGCGCCTT
GTGGCCCAGTTCAGGCTTTATCAGCACCCCTTCGGCAATATCAAAACAGA
TGCCTTCGAGTAGGCCGGCGATCATGAGCCTGACGGCACTGAGCGCCTTG
TGGCCCAGTTCAGGCTTTATCAGCACCCCTTCGGCAATATCAAAACAGAC
CACCCAGCTACGAAGATCGTCTCGCTTTTCGGCATCCTCGCCTTGGGCAG
GATCAAACCGTAGCCGAACGGCTCTCGTCGCGAGACGGCAACGAATCGGT
CTTCGAACCGCGCCCTTCCCCGGACTGACATTAGGCGCAGGGATGGCCGA
CGATGATGATGTAGATCCGTTGGAAGCAGAGCTTGACATAGACCCCCTGG
ACGCCGGGCCAGATATTGTAGGATCCTTGCTCGAGGACGAGGACGAGGGA
ATTGAGGATCAGGAAGATGGCGGGGTCTACGGCGGCGAAACCATCGCTGC
GGCGCCCTCGATAAGAAAACGGTTGGGGGTGAAGGCGTCCGCCGTGGTCC
TCGAAGAGGATGACGCCGACGCGGCGTCAATGGCGGCGTTGGCCGCCGCC
GCTAAGGACACCGCGGGAAAGTCTCAGAAGAAGAAGAAGACGCGGAAGAG
GGGCGATCCATTCATGCCGAAGGGCGCTCCTGGGCCACTCGACTGGCGAG
AATTTGCTTCTCTTAAGGAGGGTGTTCGGGGGCACCTGACCACCCAGCTA
CGAAGATCGTCTCGCTTTTCGGCATCCTCGCCTTGGGCAGGATCAAACCG
TAGCCGAACGGCTCTCGTCGCGAGACGGCAACGAATCGGTCTTCGAACCG
CGCCCTTCCCCGGACTGACATTAGGCGCAGGGATGGCCGACGATGATGAT
GTAGATCCGTTGGAAGCAGAGCTTGACATAGACCCCCTGGACGCCGGGCC
AGATATTGTAGGATCCTTGCTCGAGGACGAGGACGAGGGAATTGAGGATC
AGGAAGATGGCGGGGTCTACGGCGGCGAAACCATCGCTGCGGCGCCCTCG
ATAAGAAAACGGTTGGGGGTGAAGGCGTCCGCCGTGGTCCTCGAAGAGGA
TGACGCCGACGCGGCGTCAATGGCGGCGTTGGCCGCCGCCGCTAAGGACA
CCGCGGGAAAGTCTCAGAAGAAGAAGAAGACGCGGAAGAGGGGCGATCCA
TTCATGCCGAAGGGCGCTCCTGGGCCACTCGACTGGCGAGAATTTGCTTC
TCTTAAGGAGGGTGTTCGGGGGCACCTGGTGGTGTTTCACACCGGCTTTC
CCAAGGACCAGGCGGTGGCCGATAGCCTCATTCGCCAGGTCAAGGAGCGC
TTCGGCGACGTCGTTCACGTGGTGTTTCACACCGGCTTTCCCAAGGACCA
GGCGGTGGCCGATAGCCTCATTCGCCAGGTCAAGGAGCGCTTCGGCGACG
TCGTTCACGTGCACGAAGAATTCGACGATGACGAAGACACGACAGAACAA
GAACGCCAGGAGTCGAACGCCTTCGAGGTCTGGCTCGAGGGACCGGAGGT
TATCGTCTACCATGCGAGAGGAGAGTGCAACGTGGACTTGACCGAGGAAC
AAATGGGTAAAATCTTAGATGACCTCGAGACGCGCGTGGGGGACGAATCC
ATCCTCCAGATCCCGTGCACCAAGGCGCCACGGTTCTTGATACCCGGCCT
GACGCCCCTAGAACTTCAGTCCAGATCCTACTACCCGCTGTAGGTGCACG
AAGAATTCGACGATGACGAAGACACGACAGAACAAGAACGCCAGGAGTCG
AACGCCTTCGAGGTCTGGCTCGAGGGACCGGAGGTTATCGTCTACCATGC
GAGAGGAGAGTGCAACGTGGACTTGACCGAGGAACAAATGGGTAAAATCT
TAGATGACCTCGAGACGCGCGTGGGGGACGAATCCATCCTCCAGATCCCG
TGCACCAAGGCGCCACGGTTCTTGATACCCGGCCTGACGCCCCTAGAACT
TCAGTCCAGATCCTACTACCCGCTGTAG
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