mRNA_F-serratus_M_contig639.17290.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig639.17290.1
Unique NamemRNA_F-serratus_M_contig639.17290.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig639.17290.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 1.100e-63
Identity = 111/170 (65.29%), Postives = 131/170 (77.06%), Query Frame = 1
Query:   10 LKITGGTFTESEADFGGFLYVEGDGTTSCKEASIEKHTGVDGGAIYAVEDAVLDWACHLKDNEALVGPAIYARDGASITVRNVDLYENAISRGSVVFLASSSLYTYQVVFVDFTGSSDLSAVQVDGDSTYVAVQTTFNGFEGEAVVFSDGKLHLDECDFSNSSASVLVYS 519
            + IT GTFT +EADFGGFLY EG G  SC  AS+  H GVDGGA+YAVE A L+W C L +N AL GPAIYARD A + +R V+LY+N ++RGSVVF+ SS+L TYQ VF D  GSSDLSAVQ D DS+Y A  T+F GF GEAVVFS+G L+LD+CDFS S+ASVLVYS
Sbjct:  516 INITQGTFTNNEADFGGFLYKEGPGNASCTGASVVGHRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPAIYARDNAEVVLRGVELYDNVVARGSVVFIVSSNLTTYQTVFTDTEGSSDLSAVQADEDSSYKAEDTSFVGFAGEAVVFSEGILYLDDCDFSGSAASVLVYS 685          
BLAST of mRNA_F-serratus_M_contig639.17290.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 3.840e-61
Identity = 108/170 (63.53%), Postives = 128/170 (75.29%), Query Frame = 1
Query:   10 LKITGGTFTESEADFGGFLYVEGDGTTSCKEASIEKHTGVDGGAIYAVEDAVLDWACHLKDNEALVGPAIYARDGASITVRNVDLYENAISRGSVVFLASSSLYTYQVVFVDFTGSSDLSAVQVDGDSTYVAVQTTFNGFEGEAVVFSDGKLHLDECDFSNSSASVLVYS 519
            + IT GTFT +EADFGGFLY EG G  SC  AS+  H GVDGGA+YAVE A L+W C L +N AL GPAIYARD A + +R V+L +N ++RGSVVF+ SS+L TYQ VF D  GS DLSAVQ D DS+Y A  T+F GF G AVVFS+G L+LDEC+FS S+ASVLVYS
Sbjct:  166 IDITQGTFTNNEADFGGFLYKEGPGNASCTGASVAGHRGVDGGAVYAVEGAKLEWGCDLVNNSALAGPAIYARDNAEVVLRGVELCDNVVARGSVVFVVSSNLTTYQTVFTDTAGSPDLSAVQADEDSSYKAEDTSFVGFAGRAVVFSEGTLYLDECNFSGSTASVLVYS 335          
BLAST of mRNA_F-serratus_M_contig639.17290.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 6.430e-60
Identity = 106/169 (62.72%), Postives = 127/169 (75.15%), Query Frame = 1
Query:   13 KITGGTFTESEADFGGFLYVEGDGTTSCKEASIEKHTGVDGGAIYAVEDAVLDWACHLKDNEALVGPAIYARDGASITVRNVDLYENAISRGSVVFLASSSLYTYQVVFVDFTGSSDLSAVQVDGDSTYVAVQTTFNGFEGEAVVFSDGKLHLDECDFSNSSASVLVYS 519
            +IT GTFT +EADFGGFLY EG G   C  AS+  H GVDGGA+YAVE A L+W CHL +N AL GPAIYARD A + +R  +L +N ++RGSVVF+ SS+L TYQ VF D  GS+DLSAVQ D DS+Y A  T+F GF GEAVVF +G L+LD+CDFS S+ASVLV S
Sbjct:  605 QITQGTFTNNEADFGGFLYKEGSGNAYCTGASVVGHRGVDGGAVYAVEGAKLEWGCHLVNNSALAGPAIYARDNAEVVLRGAELNDNVVARGSVVFVVSSNLTTYQTVFTDTGGSADLSAVQADEDSSYKAEDTSFVGFAGEAVVFCEGILYLDDCDFSGSTASVLVQS 773          
BLAST of mRNA_F-serratus_M_contig639.17290.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.780e-46
Identity = 81/147 (55.10%), Postives = 112/147 (76.19%), Query Frame = 1
Query:   76 GDGTTSCKEASIEKHTGVDGGAIYAVEDAVLDWACHLKDNEALVGPAIYARDGASITVRNVDLYENAISRGSVVFLASSSLYTYQVVFVDFTGSSDLSAVQVDGDSTYVAVQTTFNGFEGEAVVFSDGKLHLDECDFSNSSASVLVY 516
            G+G  +C  A++ +H G+DGGAIYA++ A L+WACH+++N AL+GPAIYARD A + +R V++ +N ++RGS +FL +S+  T QVV  D + +SDLSAVQ D  STY A  T F GF GE VV+S+G+L+LDECDFS SS++VLVY
Sbjct:  412 GEGNATCSGATVLQHEGIDGGAIYAIDGANLEWACHIRENSALIGPAIYARDNAVVALRGVEVSDNFVTRGSAIFLVNSTFITSQVVVNDTSENSDLSAVQTDALSTYTAQDTCFVGFAGEVVVYSEGELYLDECDFSGSSSAVLVY 558          
BLAST of mRNA_F-serratus_M_contig639.17290.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 2.130e-45
Identity = 85/169 (50.30%), Postives = 116/169 (68.64%), Query Frame = 1
Query:   10 LKITGGTFTESEADFGGFLYVEGDGTTSCKEASIEKHTGVDGGAIYAVEDAVLDWACHLKDNEALVGPAIYARDGASITVRNVDLYENAISRGSVVFLASSSLYTYQVVFVDFTGSSDLSAVQVDGDSTYVAVQTTFNGFEGEAVVFSDGKLHLDECDFSNSSASVLVY 516
            ++ITGGTF  ++ADF            +C         GVDGGAIYAV+ A L+W CHL++N AL+GPAIYARD A + +  V++ +N ++RGS +F+ +S+L T QVV  D + + DLSAVQ D  STY+A  T+F GF GE VV+ +G+L+LDECDFS SS++VLVY
Sbjct:  611 IEITGGTFISNKADFXXXXXXXXXXNAACXXXXXXXXXGVDGGAIYAVDGANLEWECHLRENSALIGPAIYARDYAVVALSGVEVADNFVTRGSAIFVVNSALITSQVVVSDTSENPDLSAVQTDRLSTYIAEDTSFVGFAGEVVVYGEGELYLDECDFSGSSSAVLVY 779          
BLAST of mRNA_F-serratus_M_contig639.17290.1 vs. uniprot
Match: D7G120_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G120_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 6.680e-39
Identity = 76/140 (54.29%), Postives = 101/140 (72.14%), Query Frame = 1
Query:  115 KHTGVDGGAIYAVEDAVLDWACHLKDNEALVGPAIYARDGASITVRNVDLYENAISRGSVVFLASSSLYTYQVVFVDFTGSSDLSAVQVDGDSTYVAVQTTFNGFEGEAVVFSDGKLHLDEC------DFSNSSASVLVY 516
            KH GVDG AIYA++ A L+W C+L++N AL+GPAIYARD A + +  V++ +N ++RGS +F+ +S L TYQVV  D + + DLSAVQ D  STY A  T+F GF GE VV+S+G L+LDEC      DFS SS++VLVY
Sbjct:  437 KHEGVDGDAIYAIDGANLEWECNLRENSALIGPAIYARDNAVVALSGVEVSDNFVTRGSAIFVVNSELITYQVVVNDTSENPDLSAVQTDRLSTYTAEDTSFVGFAGEVVVYSEGGLYLDECGYLDECDFSGSSSAVLVY 576          
BLAST of mRNA_F-serratus_M_contig639.17290.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 6.230e-37
Identity = 71/127 (55.91%), Postives = 95/127 (74.80%), Query Frame = 1
Query:  148 AVEDAVLDWACHLKDNEALVGPAIYARDGASITVRNVDLYENAISRGSVVFLASSSLYTYQVVFVDFTGSSDLSAVQVDGDSTYVAVQTTFNGFEGEAVVFSDGKLHLDECDFSNSSASVLVYSVSE 528
            AV+ A L+W CHL++N AL+GPAIYARD A +T+  V++ +N ++RGS +F+ +S L TYQVV  D + + DLSAVQ D  STY A  T+F GF GE VV+S+G L+LDECDFS SS++VLVY+  E
Sbjct:  472 AVDGANLEWECHLRENSALIGPAIYARDNAVVTLSGVEVSDNFVTRGSAIFVVNSELITYQVVVNDTSENPDLSAVQTDRLSTYTAEDTSFVGFAGEVVVYSEGGLYLDECDFSGSSSAVLVYAEKE 598          
BLAST of mRNA_F-serratus_M_contig639.17290.1 vs. uniprot
Match: A0A6H5JS62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS62_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.280e-21
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   25 GTFTESEADFGGFLYVEGDGTTSCKEASIEKHTGVDGGAIYAVEDAVLDWACHLKDNEALVGPAI 219
            GTFT +EADFGGFLY E  G  SC  AS+ +H GVDGGA+YAVE A L+W CHL +N AL GPA+
Sbjct:    3 GTFTNNEADFGGFLYKEVPGNASCTGASVARHRGVDGGAVYAVEGAKLEWGCHLVNNSALAGPAM 67          
BLAST of mRNA_F-serratus_M_contig639.17290.1 vs. uniprot
Match: D7G5M1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.860e-19
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   10 LKITGGTFTESEADFGGFLYVEGDGTTSCKEASIEKHTGVDGGAIYAVEDAVLDWACHLKDNEALVGPAI 219
            + IT GTFT +EADFGGFLY EG G  SC  ASI  H GV+GGA+YAVE   L+W C L +N AL GPA+
Sbjct:  101 ISITQGTFTNNEADFGGFLYKEGPGNASCTGASIAGHRGVNGGALYAVEGPKLEWGCDLVNNSALTGPAM 170          
BLAST of mRNA_F-serratus_M_contig639.17290.1 vs. uniprot
Match: D7G5M2_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M2_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 9.280e-16
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 1
Query:  334 VFVDFTGSSDLSAVQVDGDSTYVAVQTTFNGFEGEAVVFSDGKLHLDECDFSNSSASVLVYS 519
            VF D  GSSDLSAVQ D DS+Y A +T+F GF G+AVVFS+G L+LD+C+FS SSASVLVYS
Sbjct:    8 VFTDTGGSSDLSAVQADEDSSYKAEETSFVGFAGDAVVFSEGTLYLDDCNFSGSSASVLVYS 69          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig639.17290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G0B0_ECTSI1.100e-6365.29Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G0A8_ECTSI3.840e-6163.53Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JRA9_9PHAE6.430e-6062.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G119_ECTSI1.780e-4655.10Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5K4A5_9PHAE2.130e-4550.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G120_ECTSI6.680e-3954.29Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FXY9_ECTSI6.230e-3755.91Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JS62_9PHAE3.280e-2164.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5M1_ECTSI2.860e-1961.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5M2_ECTSI9.280e-1669.35Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig639contigF-serratus_M_contig639:5663..6921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size528
Cds size528
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig639.17290.1prot_F-serratus_M_contig639.17290.1Fucus serratus malepolypeptideF-serratus_M_contig639 5663..6921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931971.9530804-CDS-F-serratus_M_contig639:5662..57521622931971.9530804-CDS-F-serratus_M_contig639:5662..5752Fucus serratus maleCDSF-serratus_M_contig639 5663..5752 -
1690964082.8103611-CDS-F-serratus_M_contig639:5662..57521690964082.8103611-CDS-F-serratus_M_contig639:5662..5752Fucus serratus maleCDSF-serratus_M_contig639 5663..5752 -
1622931972.0511494-CDS-F-serratus_M_contig639:5973..61931622931972.0511494-CDS-F-serratus_M_contig639:5973..6193Fucus serratus maleCDSF-serratus_M_contig639 5974..6193 -
1690964082.8209617-CDS-F-serratus_M_contig639:5973..61931690964082.8209617-CDS-F-serratus_M_contig639:5973..6193Fucus serratus maleCDSF-serratus_M_contig639 5974..6193 -
1622931972.0940447-CDS-F-serratus_M_contig639:6703..69211622931972.0940447-CDS-F-serratus_M_contig639:6703..6921Fucus serratus maleCDSF-serratus_M_contig639 6704..6921 -
1690964082.8353133-CDS-F-serratus_M_contig639:6703..69211690964082.8353133-CDS-F-serratus_M_contig639:6703..6921Fucus serratus maleCDSF-serratus_M_contig639 6704..6921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig639.17290.1

>prot_F-serratus_M_contig639.17290.1 ID=prot_F-serratus_M_contig639.17290.1|Name=mRNA_F-serratus_M_contig639.17290.1|organism=Fucus serratus male|type=polypeptide|length=176bp
MRGLKITGGTFTESEADFGGFLYVEGDGTTSCKEASIEKHTGVDGGAIYA
VEDAVLDWACHLKDNEALVGPAIYARDGASITVRNVDLYENAISRGSVVF
LASSSLYTYQVVFVDFTGSSDLSAVQVDGDSTYVAVQTTFNGFEGEAVVF
SDGKLHLDECDFSNSSASVLVYSVSE
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mRNA from alignment at F-serratus_M_contig639:5663..6921-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig639.17290.1 ID=mRNA_F-serratus_M_contig639.17290.1|Name=mRNA_F-serratus_M_contig639.17290.1|organism=Fucus serratus male|type=mRNA|length=1259bp|location=Sequence derived from alignment at F-serratus_M_contig639:5663..6921- (Fucus serratus male)
ATGCGTGGCTTAAAGATAACGGGGGGTACTTTCACCGAGAGCGAGGCTGA CTTCGGCGGTTTCCTGTACGTAGAAGGCGACGGCACTACCTCCTGCAAGG AGGCGTCCATTGAAAAACACACCGGGGTTGACGGAGGGGCAATCTACGCC GTCGAGGACGCTGTTCTTGATTGGGCATGTCACCTGAAGGACAACGAAGC GCTCGTAGGGCCCGCTATGTGAGACAACATGTTAGTTCATTTATATGATT TTTTGTGGGACAGGTGACAGCCCACCATGCGGTCTTTCACCACTGTAGGC CGACTCAAGAGAAAACATGGATGGTGCTATGATGTTGTTCATCGTTTTGT GACAATAAAAAACAAAGGCATATCGAGGTCGGACGCACCCTCCAATATCG TTTTCTCGCACGGCTTTCGATGACAAGTACACGCTCCTTTGAATAGCAAT GCGAGATCAATATCGTTTTATTTCACGAATAGTGCGTTCTTGCCCGTAAA AGTATAGAAATCCGTTATTATGGTGGCGAACCGAGTCGTTAGTATAAGGG AAGATGACAGAATAGGGACCCAAAAATATTTCCAAGCAAAGATCTTCTCT CTACGAACCGCCAGGTCAAGTAGTGGGATCAGGGGGTGTTGTCTTCATCT TCTTGTAATACATTTCGTTATTGCTGTACTCTCTTGTTGGCCTTCTGTTC TCTTTTGACCCGCGCCGCGCCGCGCCAGCTACGCCCGCGACGGTGCGAGC ATAACGGTCAGGAACGTTGATCTATACGAAAACGCTATCTCTCGGGGGAG TGTTGTGTTTCTCGCATCAAGCTCATTGTACACCTACCAGGTCGTTTTTG TCGACTTTACGGGGTCCTCGGACCTGTCCGCTGTACAAGTGGATGGCGAC TCTACCTACGTTGCAGTACAAACAACCTTCAACGGGTTTGAGGGAGAGGT GGGCCGAAAATATCACCAACAACATGTTAAAAAGAAAAACACCACCAACA AGAATATGGGTAATATTTATAGTCGTTCATGTATAACCTGCATGTCTTTT GGTTTATGCGGTATTATGAGCATATGCTTACTACACTTTTTGTCTGAGAG TCGCGCTGGCGCCTTATCTTTTGCGTCCACTCTCTCTTTTACTTTCAAAT TTTGCCTTTGTGGTGACAGGCGGTTGTCTTCAGCGATGGAAAGCTGCACC TAGATGAATGCGACTTCAGTAACAGCTCTGCTTCTGTGCTGGTGTATTCG GTATCTGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig639:5663..6921-

>mRNA_F-serratus_M_contig639.17290.1 ID=mRNA_F-serratus_M_contig639.17290.1|Name=mRNA_F-serratus_M_contig639.17290.1|organism=Fucus serratus male|type=CDS|length=1056bp|location=Sequence derived from alignment at F-serratus_M_contig639:5663..6921- (Fucus serratus male)
ATGCGTGGCTTAAAGATAACGGGGGGTACTTTCACCGAGAGCGAGGCTGA
CTTCGGCGGTTTCCTGTACGTAGAAGGCGACGGCACTACCTCCTGCAAGG
AGGCGTCCATTGAAAAACACACCGGGGTTGACGGAGGGGCAATCTACGCC
GTCGAGGACGCTGTTCTTGATTGGGCATGTCACCTGAAGGACAACGAAGC
GCTCGTAGGGCCCGCTATATGCGTGGCTTAAAGATAACGGGGGGTACTTT
CACCGAGAGCGAGGCTGACTTCGGCGGTTTCCTGTACGTAGAAGGCGACG
GCACTACCTCCTGCAAGGAGGCGTCCATTGAAAAACACACCGGGGTTGAC
GGAGGGGCAATCTACGCCGTCGAGGACGCTGTTCTTGATTGGGCATGTCA
CCTGAAGGACAACGAAGCGCTCGTAGGGCCCGCTATCTACGCCCGCGACG
GTGCGAGCATAACGGTCAGGAACGTTGATCTATACGAAAACGCTATCTCT
CGGGGGAGTGTTGTGTTTCTCGCATCAAGCTCATTGTACACCTACCAGGT
CGTTTTTGTCGACTTTACGGGGTCCTCGGACCTGTCCGCTGTACAAGTGG
ATGGCGACTCTACCTACGTTGCAGTACAAACAACCTTCAACGGGTTTGAG
GGAGAGCTACGCCCGCGACGGTGCGAGCATAACGGTCAGGAACGTTGATC
TATACGAAAACGCTATCTCTCGGGGGAGTGTTGTGTTTCTCGCATCAAGC
TCATTGTACACCTACCAGGTCGTTTTTGTCGACTTTACGGGGTCCTCGGA
CCTGTCCGCTGTACAAGTGGATGGCGACTCTACCTACGTTGCAGTACAAA
CAACCTTCAACGGGTTTGAGGGAGAGGCGGTTGTCTTCAGCGATGGAAAG
CTGCACCTAGATGAATGCGACTTCAGTAACAGCTCTGCTTCTGTGCTGGT
GTATTCGGTATCTGAGGCGGTTGTCTTCAGCGATGGAAAGCTGCACCTAG
ATGAATGCGACTTCAGTAACAGCTCTGCTTCTGTGCTGGTGTATTCGGTA
TCTGAG
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