mRNA_F-serratus_M_contig6389.17287.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6389.17287.1
Unique NamemRNA_F-serratus_M_contig6389.17287.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6389.17287.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.560e-36
Identity = 71/140 (50.71%), Postives = 103/140 (73.57%), Query Frame = 1
Query:   25 CAACDEEYGSGFQYSCHSCQGSDKWAGIGGAIAVCVVAMVVVALGVAYLVGVVDRPISERSGMWERRVSNFRDGLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYEKYLAALSVINLNLGSILSLSCVMETNFYAR 444
            CA CDE Y SG+Q+SC  C G +  + IG ++A+  VA+V +AL +A LV VVD    + +  W +R+++ RD +V+A+PLT+IKIV+V+WQI+TQFS VVNV YP  YE +LA L+V+N +LG +LS+SC+++ NFY R
Sbjct:  657 CAVCDEGYASGYQFSCSICDGENLRSAIGTSVALFFVALVGIALVIADLVRVVDEVEPDTASTWGKRLTSCRDRIVKAVPLTSIKIVVVAWQIVTQFSSVVNVVYPDIYESFLAVLNVVNFDLGFLLSVSCIVDVNFYGR 796          
BLAST of mRNA_F-serratus_M_contig6389.17287.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.710e-24
Identity = 60/142 (42.25%), Postives = 88/142 (61.97%), Query Frame = 1
Query:   25 CAACDEEYGSGFQYSCHSCQGSDKWAGIGGAIAVCVVAMVVVALGVAYLVGVVD--RPISERSGMWERRVSNFRDGLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYEKYLAALSVINLNLGSILSLSCVMETNFYAR 444
            CA C   Y  G+  +C SC G  K + +  A A+  +A+  V   V+ LV VV+   P  + S  W R  S ++  + + +PLTA+KIV+V WQI+TQ+S V  V+YP AY+ +L+ + V+NL+LG ILS +CV +TNFY R
Sbjct:  635 CAVCSAGYSPGYSRTCKSCMGDSKKSALVFAAAIGALALAAVVALVSRLVSVVEVGPPQQQGSKGWRRTCSAWQARVRQTVPLTAVKIVVVVWQIVTQYSDVAGVEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDR 776          
BLAST of mRNA_F-serratus_M_contig6389.17287.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 3.010e-23
Identity = 59/141 (41.84%), Postives = 89/141 (63.12%), Query Frame = 1
Query:   25 CAACDEEYGSGFQYSCHSCQGSDKWAGIGGAIAVCVVAMVVVALGVAYLVGVVDR-PISERSGMWERRVSNFRDGLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYEKYLAALSVINLNLGSILSLSCVMETNFYAR 444
            CA C   +  G+ +SC SC G  +        AV V+ ++ V    A LV VV+  P S+    W+++ S ++  + + +PLTAIKIV+V WQI+TQ+S V  V+YP AY+ +L+ + V+NL+LG ILSL+CV +T+FY R
Sbjct:  641 CAVCTAGFSPGYFHSCKSCMGDSRRRAFYVVSAVGVLVLLAVVFMAAKLVSVVETTPSSKAPSRWQQKRSVWQARMKKILPLTAIKIVVVVWQIVTQYSDVAGVEYPGAYKDFLSVVDVVNLDLGFILSLACVCDTDFYDR 781          
BLAST of mRNA_F-serratus_M_contig6389.17287.1 vs. uniprot
Match: A0A6H5L874_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L874_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.290e-22
Identity = 58/141 (41.13%), Postives = 87/141 (61.70%), Query Frame = 1
Query:   25 CAACDEEYGSGFQYSCHSCQGSDKWAGIGGAIAVCVVAMVVVALGVAYLVGVVDRPISERS-GMWERRVSNFRDGLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYEKYLAALSVINLNLGSILSLSCVMETNFYAR 444
            CA C   +  G+ +SC SC G  +         V  + ++ V    A LV VV+   S ++   W+R+ S +R  + + +PLTAIKIV+V WQI+TQ+S V  V+YP AY+ +L+ + V+NL+LG ILSL+CV +T+FY R
Sbjct:  499 CAVCTAGFSRGYFHSCKSCMGDSRRRAFYVVSTVGALVLLAVVFLAAKLVSVVEMTPSRKAPSRWQRKRSVWRARIKKILPLTAIKIVVVVWQIVTQYSDVAGVEYPGAYKDFLSVIDVVNLDLGFILSLACVYDTDFYDR 639          
BLAST of mRNA_F-serratus_M_contig6389.17287.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.600e-22
Identity = 58/147 (39.46%), Postives = 90/147 (61.22%), Query Frame = 1
Query:   25 CAACDEEYGSGFQYSCHSCQGSDKWAGIGGAIAVCVVAMVVVALGVAYLVGVVDRPISER-------SGMWERRVSNFRDGLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYEKYLAALSVINLNLGSILSLSCVMETNFYAR 444
            CA C   Y  G+  +C SC G+ K + +  A A+ ++A+  V + V+ LV VV+    ++       S  W R  S  +  + + +PLTA+KIV+V WQI+TQ+S V  ++YP AY+ +L+ + V+NL+LG ILS +CV +TNFY R
Sbjct:  611 CAVCAAGYSPGYSRTCKSCMGNSKKSALVFAAAIGLLALAAVMVLVSRLVSVVEVGPRQQXXXXXXGSKGWRRTCSALQARVRQTVPLTAVKIVVVVWQIVTQYSDVAGIEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDR 757          
BLAST of mRNA_F-serratus_M_contig6389.17287.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 8.750e-22
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  169 LVGVVDRPISERS--GMWERRVSNFRDGLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYEKYLAALSVINLNLGSILSLSCVMETNFYAR 444
            LV VVD     +S  G WER +S  RD +  AIPLTAIKI+LV WQI+TQF+ VV+V+YP  YE++LAAL+++N NLG  LS  C++ETNFY R
Sbjct:    8 LVRVVDDGDGTKSRVGKWERFLS-CRDAIAAAIPLTAIKIILVVWQIVTQFASVVDVEYPEIYERFLAALNLVNFNLGYFLSFLCLVETNFYGR 100          
BLAST of mRNA_F-serratus_M_contig6389.17287.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 2.250e-21
Identity = 52/99 (52.53%), Postives = 70/99 (70.71%), Query Frame = 1
Query:  148 VALGVAYLVGVVDRPISERSGMWERRVSNFRDGLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYEKYLAALSVINLNLGSILSLSCVMETNFYAR 444
            VAL +A LV VVD   +       + +++ R+ +   IPLT+IKIVLV+WQI+TQFS VVNV YP  YEK+L+ L+++N N G ILS SCV++TNFY R
Sbjct:   22 VALVIANLVRVVDDDNTGTVSACGKTLNSLRNRIANGIPLTSIKIVLVAWQIVTQFSSVVNVVYPDVYEKFLSILNLVNFNFGFILSASCVVDTNFYGR 120          
BLAST of mRNA_F-serratus_M_contig6389.17287.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.300e-20
Identity = 41/75 (54.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:  214 WERRVSNFRDGLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYEKYLAALSVINLNLGSILSLSCVMETNFY 438
            W +R+++ R+ +   +PLT+IKIVLV+WQI+TQFS V+NV YP  YE++L+ L+V+N NLG ILS+SC++++NFY
Sbjct:    9 WGKRLTSCRERITNVVPLTSIKIVLVAWQIVTQFSSVLNVVYPGVYERFLSVLNVVNFNLGFILSVSCIVDSNFY 83          
BLAST of mRNA_F-serratus_M_contig6389.17287.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 5.830e-19
Identity = 56/141 (39.72%), Postives = 79/141 (56.03%), Query Frame = 1
Query:   25 CAACDEEYGSGFQYSCHSCQGSDKWAGIGGAIAVCVVAMVVVALGVAYLVGVVDRPISERSGMWER-RVSNFRDGLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYEKYLAALSVINLNLGSILSLSCVMETNFYAR 444
            C+ C + Y  G  Y CH C G+   + +G A           A+  A LV VVD   S +     + R+S F   +V A PLT +KIV+V+WQIITQF  +    YP  Y+ +L AL+ +NL++G ILS SCV+ T+F+ R
Sbjct:  628 CSVCADGYAPGTAYQCHECSGTSMGSAVGVAXXXXXXXXXXXAVVAADLVRVVDGDDSIKDARTLKGRLSRFHAFVVTAFPLTTVKIVVVAWQIITQFGAIAGFVYPEEYQDFLNALTPVNLDIGFILSYSCVVITDFFDR 768          
BLAST of mRNA_F-serratus_M_contig6389.17287.1 vs. uniprot
Match: D7FWD7_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD7_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 9.170e-18
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 1
Query:   25 CAACDEEYGSGFQYSCHSCQGSDKWAGIGGAIAVCVVAMVVVALGVAYLVGVVD--RPISERSGMWERRVSNFRDGLVRAIPLTAIKIVLVSWQIITQFSGVVNVQYPPAYEKYLAALSVINLNLGSILSLSCVMETNFYAR 444
            C+ C + Y  G  Y CH C G+   + +G A           A+    LV VVD  R I +   + + R+S F+  +V A PLT +KIV+V+WQIITQF  +    YP  Y+ +L  L+ +NL++G ILS SC + T+F+ R
Sbjct:  387 CSVCADGYAPGTAYQCHECSGTSMGSAVGLAAXXXXXXXXXXAVVATDLVRVVDGDRSIKDARTL-KGRLSRFQAFVVNAFPLTTVKIVVVAWQIITQFGAIAGFVYPEEYQDFLNVLTPVNLDIGFILSYSCFVTTDFFDR 527          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6389.17287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE2.560e-3650.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI4.710e-2442.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTU5_ECTSI3.010e-2341.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L874_9PHAE1.290e-2241.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L324_9PHAE3.600e-2239.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHA3_9PHAE8.750e-2257.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPF7_ECTSI2.250e-2152.53Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
D7G8S0_ECTSI1.300e-2054.67Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5JSF5_9PHAE5.830e-1939.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWD7_ECTSI9.170e-1838.03Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6389contigF-serratus_M_contig6389:7896..8520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue3e-22
Seed eggNOG ortholog2880.D7FTT9
Hectar predicted targeting categorysignal anchor
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size444
Cds size444
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931971.5032325-CDS-F-serratus_M_contig6389:7895..80271622931971.5032325-CDS-F-serratus_M_contig6389:7895..8027Fucus serratus maleCDSF-serratus_M_contig6389 7896..8027 -
1690964082.6721194-CDS-F-serratus_M_contig6389:7895..80271690964082.6721194-CDS-F-serratus_M_contig6389:7895..8027Fucus serratus maleCDSF-serratus_M_contig6389 7896..8027 -
1622931971.5223393-CDS-F-serratus_M_contig6389:8208..85201622931971.5223393-CDS-F-serratus_M_contig6389:8208..8520Fucus serratus maleCDSF-serratus_M_contig6389 8209..8520 -
1690964082.6846402-CDS-F-serratus_M_contig6389:8208..85201690964082.6846402-CDS-F-serratus_M_contig6389:8208..8520Fucus serratus maleCDSF-serratus_M_contig6389 8209..8520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6389.17287.1prot_F-serratus_M_contig6389.17287.1Fucus serratus malepolypeptideF-serratus_M_contig6389 7896..8520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6389.17287.1

>prot_F-serratus_M_contig6389.17287.1 ID=prot_F-serratus_M_contig6389.17287.1|Name=mRNA_F-serratus_M_contig6389.17287.1|organism=Fucus serratus male|type=polypeptide|length=148bp
MHDSFSKDCAACDEEYGSGFQYSCHSCQGSDKWAGIGGAIAVCVVAMVVV
ALGVAYLVGVVDRPISERSGMWERRVSNFRDGLVRAIPLTAIKIVLVSWQ
IITQFSGVVNVQYPPAYEKYLAALSVINLNLGSILSLSCVMETNFYAR
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mRNA from alignment at F-serratus_M_contig6389:7896..8520-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6389.17287.1 ID=mRNA_F-serratus_M_contig6389.17287.1|Name=mRNA_F-serratus_M_contig6389.17287.1|organism=Fucus serratus male|type=mRNA|length=625bp|location=Sequence derived from alignment at F-serratus_M_contig6389:7896..8520- (Fucus serratus male)
ATGCACGACTCATTCTCCAAAGATTGTGCTGCTTGTGATGAAGAGTACGG CTCCGGTTTTCAGTACAGCTGCCACAGCTGCCAAGGGTCTGATAAGTGGG CTGGTATTGGTGGAGCCATCGCTGTGTGTGTCGTCGCAATGGTCGTGGTT GCCTTGGGTGTGGCCTATCTCGTTGGCGTTGTAGACCGGCCAATTTCTGA GAGGAGTGGAATGTGGGAGAGGCGAGTCTCGAACTTCCGAGATGGACTGG TACGCGCCATCCCTCTCACGGCTATCAAGATCGTGTTGGTTTCATGGCAG ATTATCACGCAGGTAAAATTTGTTGTACTGGATTTAAGGCGTAAGCCGCA GCCATAGAACACCGATACTGTAGTAGTGGTGTGTGTAACCCAAGGATCCG AACTTCTTATAGCTAGTTGAGCCAATCATCTCTGTTCTAATTTCACGCGC GTCCGTGTATTGTGTGGCCGATCCCCCCCCCTCTATTGCGCAGTTTTCCG GCGTGGTAAACGTCCAATACCCTCCTGCGTACGAGAAATATCTGGCGGCT CTAAGCGTCATCAATCTTAATCTTGGATCCATCCTGTCGCTTTCGTGCGT CATGGAGACCAACTTTTACGCCCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6389:7896..8520-

>mRNA_F-serratus_M_contig6389.17287.1 ID=mRNA_F-serratus_M_contig6389.17287.1|Name=mRNA_F-serratus_M_contig6389.17287.1|organism=Fucus serratus male|type=CDS|length=888bp|location=Sequence derived from alignment at F-serratus_M_contig6389:7896..8520- (Fucus serratus male)
ATGCACGACTCATTCTCCAAAGATTGTGCTGCTTGTGATGAAGAGTACGG
CTCCGGTTTTCAGTACAGCTGCCACAGCTGCCAAGGGTCTGATAAGTGGG
CTGGTATTGGTGGAGCCATCGCTGTGTGTGTCGTCGCAATGGTCGTGGTT
GCCTTGGGTGTGGCCTATCTCGTTGGCGTTGTAGACCGGCCAATTTCTGA
GAGGAGTGGAATGTGGGAGAGGCGAGTCTCGAACTTCCGAGATGGACTGG
TACGCGCCATCCCTCTCACGGCTATCAAGATCGTGTTGGTTTCATGGCAG
ATTATCACGCAGATGCACGACTCATTCTCCAAAGATTGTGCTGCTTGTGA
TGAAGAGTACGGCTCCGGTTTTCAGTACAGCTGCCACAGCTGCCAAGGGT
CTGATAAGTGGGCTGGTATTGGTGGAGCCATCGCTGTGTGTGTCGTCGCA
ATGGTCGTGGTTGCCTTGGGTGTGGCCTATCTCGTTGGCGTTGTAGACCG
GCCAATTTCTGAGAGGAGTGGAATGTGGGAGAGGCGAGTCTCGAACTTCC
GAGATGGACTGGTACGCGCCATCCCTCTCACGGCTATCAAGATCGTGTTG
GTTTCATGGCAGATTATCACGCAGTTTTCCGGCGTGGTAAACGTCCAATA
CCCTCCTGCGTACGAGAAATATCTGGCGGCTCTAAGCGTCATCAATCTTA
ATCTTGGATCCATCCTGTCGCTTTCGTGCGTCATGGAGACCAACTTTTAC
GCCCGGTTTTCCGGCGTGGTAAACGTCCAATACCCTCCTGCGTACGAGAA
ATATCTGGCGGCTCTAAGCGTCATCAATCTTAATCTTGGATCCATCCTGT
CGCTTTCGTGCGTCATGGAGACCAACTTTTACGCCCGG
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