mRNA_F-serratus_M_contig6388.17286.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6388.17286.1
Unique NamemRNA_F-serratus_M_contig6388.17286.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6388.17286.1 vs. uniprot
Match: A0A816YMV4_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816YMV4_9BILA)

HSP 1 Score: 55.5 bits (132), Expect = 2.700e-9
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   10 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPV 114
            RPYHV+YT+SRP+ EVK+RRA LVL W T WE  V
Sbjct:    1 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWEYRV 35
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BLAST of mRNA_F-serratus_M_contig6388.17286.1 vs. uniprot
Match: A0A0N4THB6_BRUPA (Uncharacterized protein n=1 Tax=Brugia pahangi TaxID=6280 RepID=A0A0N4THB6_BRUPA)

HSP 1 Score: 53.9 bits (128), Expect = 1.100e-8
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   10 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 117
            RPYHV+ TTSRP+C+V++R AGLVL   T WE+ VL
Sbjct:   15 RPYHVESTTSRPICQVRQRSAGLVLGSETAWESQVL 50
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BLAST of mRNA_F-serratus_M_contig6388.17286.1 vs. uniprot
Match: A0A3S0ZIY3_ELYCH (Uncharacterized protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZIY3_ELYCH)

HSP 1 Score: 55.1 bits (131), Expect = 1.230e-8
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   10 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 117
            RPYHV+ T SRP+ EVK+RRA LVLRW T WE  VL
Sbjct:   65 RPYHVENTGSRPITEVKQRRAWLVLRWVTAWEHHVL 100
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BLAST of mRNA_F-serratus_M_contig6388.17286.1 vs. uniprot
Match: A0A815TME6_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815TME6_ADIRI)

HSP 1 Score: 57.0 bits (136), Expect = 2.330e-8
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    4 QDRPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPV 114
            Q RPYHV+YT+SRP+ EVK+RRA LVL W T WE  V
Sbjct:  243 QPRPYHVEYTSSRPITEVKQRRARLVLGWVTAWEYRV 279
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BLAST of mRNA_F-serratus_M_contig6388.17286.1 vs. uniprot
Match: A0A3S0Z3S7_ELYCH (Uncharacterized protein (Fragment) n=2 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0Z3S7_ELYCH)

HSP 1 Score: 53.1 bits (126), Expect = 3.690e-8
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   10 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWE 105
            RPYHV+ T SRP+ EVK+RRA LVLRW T WE
Sbjct:    1 RPYHVENTGSRPITEVKQRRAWLVLRWVTAWE 32
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BLAST of mRNA_F-serratus_M_contig6388.17286.1 vs. uniprot
Match: V4BHB9_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BHB9_LOTGI)

HSP 1 Score: 53.5 bits (127), Expect = 4.040e-8
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   10 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 117
            RPYHV+ T+SRP+ EVK+RRA LVL W T WE  VL
Sbjct:   56 RPYHVENTSSRPITEVKQRRARLVLGWVTAWEHRVL 91
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BLAST of mRNA_F-serratus_M_contig6388.17286.1 vs. uniprot
Match: A0A183UVC8_TOXCA (Uncharacterized protein n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183UVC8_TOXCA)

HSP 1 Score: 53.5 bits (127), Expect = 4.950e-8
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   10 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 117
            RPYHV+ TTSRP+C VK+RRA LVL   T WE+ VL
Sbjct:   65 RPYHVENTTSRPICHVKQRRAWLVLGSETAWESQVL 100
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BLAST of mRNA_F-serratus_M_contig6388.17286.1 vs. uniprot
Match: A0A4C1YSQ9_EUMVA (Uncharacterized protein n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1YSQ9_EUMVA)

HSP 1 Score: 53.1 bits (126), Expect = 7.980e-8
Identity = 23/38 (60.53%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 FQDRPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPV 114
            F+ RPYH +YT SRP+ EVK+RRA  VL W T WE  V
Sbjct:   47 FRQRPYHAEYTGSRPITEVKQRRARSVLGWVTAWEHRV 84
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BLAST of mRNA_F-serratus_M_contig6388.17286.1 vs. uniprot
Match: A0A815RAB9_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815RAB9_ADIRI)

HSP 1 Score: 55.5 bits (132), Expect = 9.720e-8
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   10 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPV 114
            RPYHV+YT+SRP+ EVK+RRA LVL W T WE  V
Sbjct: 1694 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWEYRV 1728
[Close]
BLAST of mRNA_F-serratus_M_contig6388.17286.1 vs. uniprot
Match: A0A815F560_ADIRI (Hypothetical protein n=6 Tax=Adineta ricciae TaxID=249248 RepID=A0A815F560_ADIRI)

HSP 1 Score: 55.5 bits (132), Expect = 9.730e-8
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   10 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPV 114
            RPYHV+YT+SRP+ EVK+RRA LVL W T WE  V
Sbjct:  821 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWEYRV 855
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6388.17286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A816YMV4_9BILA2.700e-968.57Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
A0A0N4THB6_BRUPA1.100e-863.89Uncharacterized protein n=1 Tax=Brugia pahangi Tax... [more]
A0A3S0ZIY3_ELYCH1.230e-869.44Uncharacterized protein (Fragment) n=1 Tax=Elysia ... [more]
A0A815TME6_ADIRI2.330e-867.57Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A3S0Z3S7_ELYCH3.690e-871.88Uncharacterized protein (Fragment) n=2 Tax=Elysia ... [more]
V4BHB9_LOTGI4.040e-866.67Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]
A0A183UVC8_TOXCA4.950e-866.67Uncharacterized protein n=1 Tax=Toxocara canis Tax... [more]
A0A4C1YSQ9_EUMVA7.980e-860.53Uncharacterized protein n=1 Tax=Eumeta variegata T... [more]
A0A815RAB9_ADIRI9.720e-868.57Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
A0A815F560_ADIRI9.730e-868.57Hypothetical protein n=6 Tax=Adineta ricciae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6388contigF-serratus_M_contig6388:32387..32518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931971.460152-CDS-F-serratus_M_contig6388:32386..325181622931971.460152-CDS-F-serratus_M_contig6388:32386..32518Fucus serratus maleCDSF-serratus_M_contig6388 32387..32518 +
1690964082.6595488-CDS-F-serratus_M_contig6388:32386..325181690964082.6595488-CDS-F-serratus_M_contig6388:32386..32518Fucus serratus maleCDSF-serratus_M_contig6388 32387..32518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6388.17286.1prot_F-serratus_M_contig6388.17286.1Fucus serratus malepolypeptideF-serratus_M_contig6388 32387..32518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6388.17286.1

>prot_F-serratus_M_contig6388.17286.1 ID=prot_F-serratus_M_contig6388.17286.1|Name=mRNA_F-serratus_M_contig6388.17286.1|organism=Fucus serratus male|type=polypeptide|length=44bp
FQDRPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPVLFLFR*
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mRNA from alignment at F-serratus_M_contig6388:32387..32518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6388.17286.1 ID=mRNA_F-serratus_M_contig6388.17286.1|Name=mRNA_F-serratus_M_contig6388.17286.1|organism=Fucus serratus male|type=mRNA|length=132bp|location=Sequence derived from alignment at F-serratus_M_contig6388:32387..32518+ (Fucus serratus male)
TTTCAGGATCGGCCATACCACGTTGACTACACCACATCCCGTCCGCTCTG
TGAAGTTAAGCGGCGTCGGGCCGGGCTAGTACTACGGTGGGGGACCACGT
GGGAAGCCCCGGTGCTGTTCCTTTTTCGTTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6388:32387..32518+

>mRNA_F-serratus_M_contig6388.17286.1 ID=mRNA_F-serratus_M_contig6388.17286.1|Name=mRNA_F-serratus_M_contig6388.17286.1|organism=Fucus serratus male|type=CDS|length=264bp|location=Sequence derived from alignment at F-serratus_M_contig6388:32387..32518+ (Fucus serratus male)
TTTCAGGATCGGCCATACCACGTTGACTACACCACATCCCGTCCGCTCTG
TGAAGTTAAGCGGCGTCGGGCCGGGCTAGTACTACGGTGGGGGACCACGT
GGGAAGCCCCGGTGCTGTTCCTTTTTCGTTAATTTCAGGATCGGCCATAC
CACGTTGACTACACCACATCCCGTCCGCTCTGTGAAGTTAAGCGGCGTCG
GGCCGGGCTAGTACTACGGTGGGGGACCACGTGGGAAGCCCCGGTGCTGT
TCCTTTTTCGTTAA
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