mRNA_F-serratus_M_contig638.17284.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig638.17284.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 186 bits (471), Expect = 1.370e-50 Identity = 97/246 (39.43%), Postives = 151/246 (61.38%), Query Frame = 1
Query: 1 SIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAV 738
SI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +KF K++ + +++ GC I R+ +T L+ Q Y++SM+KRFDV+ +++PA+ GV K D+ + E +P REA+G++MW +T +RPD++ AVRAVAR P H A+
Sbjct: 384 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGE-------WPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAI 621
BLAST of mRNA_F-serratus_M_contig638.17284.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 177 bits (449), Expect = 1.400e-49 Identity = 96/245 (39.18%), Postives = 148/245 (60.41%), Query Frame = 1
Query: 1 SIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKA 735
S+R+L A A ++ LRHFD +QAF+++D+DE++++ +PE G + +LNK++YGL QA R W++ + +GF Q AD CVFR + +G + +VVHVDDI + +++ D+F +L +K++GD +Y GC R+ LK Q Y E + F V+ ++P G+ LS+ D+ EE+ +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P H +A
Sbjct: 20 SVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRA 256
BLAST of mRNA_F-serratus_M_contig638.17284.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 183 bits (464), Expect = 1.820e-49 Identity = 96/246 (39.02%), Postives = 148/246 (60.16%), Query Frame = 1
Query: 1 SIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAV 738
SI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +KF K++G+ +++ GC I R+ L+ Q Y++SM++RFDVK +++PA G K ++ + E +P REAVG++MW +T +RPD++ AVRAVAR P H A+
Sbjct: 421 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGE-------WPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAI 658
BLAST of mRNA_F-serratus_M_contig638.17284.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 184 bits (466), Expect = 2.010e-49 Identity = 95/246 (38.62%), Postives = 149/246 (60.57%), Query Frame = 1
Query: 1 SIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAV 738
SI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +KF K++G+ +++ GC I R+ + L+ Q Y++SM++RFDVK +++PA G K ++ + E +P REA+G++MW +T +RPD++ AVRAVAR P H A+
Sbjct: 830 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAI 1067
BLAST of mRNA_F-serratus_M_contig638.17284.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 184 bits (466), Expect = 2.090e-49 Identity = 95/246 (38.62%), Postives = 149/246 (60.57%), Query Frame = 1
Query: 1 SIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAV 738
SI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +KF K++G+ +++ GC I R+ + L+ Q Y++SM++RFDVK +++PA G K ++ + E +P REA+G++MW +T +RPD++ AVRAVAR P H A+
Sbjct: 1209 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAI 1446
BLAST of mRNA_F-serratus_M_contig638.17284.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 184 bits (466), Expect = 2.100e-49 Identity = 95/246 (38.62%), Postives = 149/246 (60.57%), Query Frame = 1
Query: 1 SIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAV 738
SI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +KF K++G+ +++ GC I R+ + L+ Q Y++SM++RFDVK +++PA G K ++ + E +P REA+G++MW +T +RPD++ AVRAVAR P H A+
Sbjct: 1229 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAI 1466
BLAST of mRNA_F-serratus_M_contig638.17284.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 184 bits (466), Expect = 2.110e-49 Identity = 95/246 (38.62%), Postives = 149/246 (60.57%), Query Frame = 1
Query: 1 SIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAV 738
SI+++LA A K L H+D +QA+ A +DEE+++++P + + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +KF K++G+ +++ GC I R+ + L+ Q Y++SM++RFDVK +++PA G K ++ + E +P REA+G++MW +T +RPD++ AVRAVAR P H A+
Sbjct: 1372 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAI 1609
BLAST of mRNA_F-serratus_M_contig638.17284.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 176 bits (447), Expect = 4.540e-49 Identity = 97/240 (40.42%), Postives = 144/240 (60.00%), Query Frame = 1
Query: 7 RMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAH 726
+ML A A + +L HFD EQAF++++++E++Y+ +P+ G + +L K++YGL QA R W+ + A+GFEQ AD CVFR + DG +++VVHVDDI A ++ D+F A+L + +K++G+ +Y GC RN++T L Q + + + + V VP +SGV LS D + E FP+RE VG+LMW AT TRPDIA AVRAVAR+C +P H
Sbjct: 46 KMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFA-VGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGV-KLSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVH 277
BLAST of mRNA_F-serratus_M_contig638.17284.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE) HSP 1 Score: 181 bits (460), Expect = 8.710e-49 Identity = 98/246 (39.84%), Postives = 145/246 (58.94%), Query Frame = 1
Query: 1 SIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKAV 738
S +++LA A K H D +QA+ A +DEE++++ P E + + +AIYGL Q+GR W D + GFEQ KADPCVFRK+VD M++V++VDDIL D+ + A L +KF ++VG+ E++ GC I R+ + LK Q Y++SM+KRFDV+ +++PA+ GV K D E +P REA+G++MW +T +RPD++ AVRAVAR P H A+
Sbjct: 560 SNKLMLAVANEKGVNFNHSDVKQAYTHATLDEEVFLKRPAGCGEKLRKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDNENGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAI 797
BLAST of mRNA_F-serratus_M_contig638.17284.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 177 bits (449), Expect = 2.880e-48 Identity = 96/245 (39.18%), Postives = 148/245 (60.41%), Query Frame = 1
Query: 1 SIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKADPCVFRKVVDGEAEMVVVVHVDDILADAKDKATMDRFAAELGQKFKLKDVGDAEYYMGCHITRNRKTRELKFDQHLYVESMIKRFDVKKEAKVPAASGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACAVRAVARFCENPGPAHKKA 735
S+R+L A A ++ LRHFD +QAF+++D+DE++++ +PE G + +LNK++YGL QA R W++ + +GF Q AD CVFR + +G + +VVHVDDI + +++ D+F +L +K++GD +Y GC R+ LK Q Y E + F V+ ++P G+ LS+ D+ EE+ +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P H +A
Sbjct: 194 SVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRA 430 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig638.17284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig638.17284.1 >prot_F-serratus_M_contig638.17284.1 ID=prot_F-serratus_M_contig638.17284.1|Name=mRNA_F-serratus_M_contig638.17284.1|organism=Fucus serratus male|type=polypeptide|length=243bp MLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNback to top mRNA from alignment at F-serratus_M_contig638:383786..384523- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig638.17284.1 ID=mRNA_F-serratus_M_contig638.17284.1|Name=mRNA_F-serratus_M_contig638.17284.1|organism=Fucus serratus male|type=mRNA|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig638:383786..384523- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig638:383786..384523- >mRNA_F-serratus_M_contig638.17284.1 ID=mRNA_F-serratus_M_contig638.17284.1|Name=mRNA_F-serratus_M_contig638.17284.1|organism=Fucus serratus male|type=CDS|length=1458bp|location=Sequence derived from alignment at F-serratus_M_contig638:383786..384523- (Fucus serratus male)back to top |