mRNA_F-serratus_M_contig6379.17282.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6379.17282.1
Unique NamemRNA_F-serratus_M_contig6379.17282.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6379.17282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6379contigF-serratus_M_contig6379:5822..6404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6379.17282.1prot_F-serratus_M_contig6379.17282.1Fucus serratus malepolypeptideF-serratus_M_contig6379 5843..6404 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931970.894302-UTR-F-serratus_M_contig6379:5821..58421622931970.894302-UTR-F-serratus_M_contig6379:5821..5842Fucus serratus maleUTRF-serratus_M_contig6379 5822..5842 +
1690964082.462473-UTR-F-serratus_M_contig6379:5821..58421690964082.462473-UTR-F-serratus_M_contig6379:5821..5842Fucus serratus maleUTRF-serratus_M_contig6379 5822..5842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931970.9142864-CDS-F-serratus_M_contig6379:5842..58811622931970.9142864-CDS-F-serratus_M_contig6379:5842..5881Fucus serratus maleCDSF-serratus_M_contig6379 5843..5881 +
1690964082.4745584-CDS-F-serratus_M_contig6379:5842..58811690964082.4745584-CDS-F-serratus_M_contig6379:5842..5881Fucus serratus maleCDSF-serratus_M_contig6379 5843..5881 +
1622931970.9348552-CDS-F-serratus_M_contig6379:6194..64041622931970.9348552-CDS-F-serratus_M_contig6379:6194..6404Fucus serratus maleCDSF-serratus_M_contig6379 6195..6404 +
1690964082.4870167-CDS-F-serratus_M_contig6379:6194..64041690964082.4870167-CDS-F-serratus_M_contig6379:6194..6404Fucus serratus maleCDSF-serratus_M_contig6379 6195..6404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6379.17282.1

>prot_F-serratus_M_contig6379.17282.1 ID=prot_F-serratus_M_contig6379.17282.1|Name=mRNA_F-serratus_M_contig6379.17282.1|organism=Fucus serratus male|type=polypeptide|length=83bp
MKGRIRRFLSDGQIKKELGESFFLRNPCPAVATAAGVPREDPANTSGGVQ
GPINSREIVGVAAGTKAVARNRGAILPRRMENR
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mRNA from alignment at F-serratus_M_contig6379:5822..6404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6379.17282.1 ID=mRNA_F-serratus_M_contig6379.17282.1|Name=mRNA_F-serratus_M_contig6379.17282.1|organism=Fucus serratus male|type=mRNA|length=583bp|location=Sequence derived from alignment at F-serratus_M_contig6379:5822..6404+ (Fucus serratus male)
GCCGTATTGCGGCGGCCACTTATGAAAGGCCGGATACGGCGATTTCTGAG
TGATGGTCAGGTGCGGGGTCGAGAAGCTCGGAGTTAAAGTCGTGTTCTTC
CTTATCCAAAGCTCGAACGACTTTCAACTATTCTCCTCCTATTCTCTGCG
CGGCTGACTTTTTCGTGTTGAGTGTGTTGCCAACGAGTGCAACTTCCGAG
CGACTCCCTCTGTATCCCGCAGTATCTTAACGCGCACGAGTGCATGAAAG
ACATCTTCCCTCAGTATTTATCTCTTCCTTCACCCCCGGCCTAGATTGTG
ATCTCTATGGGCTGCATGGCTCGAGCTTTTTGTTACTGACTGCTCGAGTG
TCACTCGCCCATCCCTCAACCAGATTAAAAAGGAACTCGGAGAAAGTTTC
TTCTTAAGGAACCCTTGCCCAGCTGTGGCTACCGCAGCCGGGGTCCCTCG
GGAAGATCCCGCGAATACGTCTGGCGGGGTCCAAGGCCCTATTAATAGCA
GAGAAATCGTCGGGGTGGCGGCTGGGACGAAGGCGGTGGCAAGAAACAGA
GGAGCCATCCTTCCTAGGAGAATGGAAAATCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6379:5822..6404+

>mRNA_F-serratus_M_contig6379.17282.1 ID=mRNA_F-serratus_M_contig6379.17282.1|Name=mRNA_F-serratus_M_contig6379.17282.1|organism=Fucus serratus male|type=CDS|length=498bp|location=Sequence derived from alignment at F-serratus_M_contig6379:5822..6404+ (Fucus serratus male)
ATGAAAGGCCGGATACGGCGATTTCTGAGTGATGGTCAGATGAAAGGCCG
GATACGGCGATTTCTGAGTGATGGTCAGATTAAAAAGGAACTCGGAGAAA
GTTTCTTCTTAAGGAACCCTTGCCCAGCTGTGGCTACCGCAGCCGGGGTC
CCTCGGGAAGATCCCGCGAATACGTCTGGCGGGGTCCAAGGCCCTATTAA
TAGCAGAGAAATCGTCGGGGTGGCGGCTGGGACGAAGGCGGTGGCAAGAA
ACAGAGGAGCCATCCTTCCTAGGAGAATGGAAAATCGCATTAAAAAGGAA
CTCGGAGAAAGTTTCTTCTTAAGGAACCCTTGCCCAGCTGTGGCTACCGC
AGCCGGGGTCCCTCGGGAAGATCCCGCGAATACGTCTGGCGGGGTCCAAG
GCCCTATTAATAGCAGAGAAATCGTCGGGGTGGCGGCTGGGACGAAGGCG
GTGGCAAGAAACAGAGGAGCCATCCTTCCTAGGAGAATGGAAAATCGC
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