mRNA_F-serratus_M_contig637.17277.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig637.17277.1
Unique NamemRNA_F-serratus_M_contig637.17277.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig637.17277.1 vs. uniprot
Match: A0A6H5JIS8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS8_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 4.130e-64
Identity = 136/315 (43.17%), Postives = 176/315 (55.87%), Query Frame = 1 
Query:    1 ASPEVVVEWLCFLDSQGNGTTIVHATSCPQVGQYSL-SCSDSAFGCTRRYAFGSLQKSFVSKLKRAYVEILGRFEDWSPQDMRGNPVTGAVVDQYLAFTTQEQLRAGVTPKQAPLILRPDFQHLMRDMHTGLLYAAQPGVRLAYARDMALFAVAFRAGSRGNDLAKLLAAQVLHLPSSQGLVLNFHFTKTLRDGAAHASLLAPDNDMPETCAVAAMLRYAQAAESCDWDMSKGYLFPEIQDSGKHTPKRLARPLSAKAMAARFKEHLGRAGLGARQFTFHSFRVGCAVTQTIAGKDIAEIMAAVNWKSEKTVRRY 942
            ASP+ VV+W  +LDSQG GT +VH  +C  VG     SCS  A  C +RY   SL+K F SKLK AY E LGR +DW+P    GNP     VD YL FTT+EQ R GVT KQA  +L      L+  M    L +     R+A  RD+ALF++A  +  RG DL+  L +QVL LP S+G + NF F KTLR       +LA  N   + CAV A+  Y  AA+   WD+S GYLFP + D G     +L     A  M +  + HL  A L A  F+ HSFRVG ++++++ G  I EIM    WK+E   + Y
Sbjct:  716 ASPDDVVDWFSYLDSQGKGTKLVHDATCAGVGSSDRRSCSPGAT-CKKRYGAESLRKGFYSKLKMAYKEQLGRGDDWNPTVGSGNPCASPTVDAYLTFTTEEQKRVGVTAKQAAPLLEDTLGELLPHMRLRALASDSMAERIAITRDVALFSLAHHSMRRGFDLSFTLGSQVLRLPESRGFIFNFLFGKTLRASTEAIVVLASTNR--DVCAVRAVAEYILAAQQVGWDLSSGYLFPSVLDDGSRGNSKLV----ATQMTSSLQAHLRAASLPAH-FSMHSFRVGGSLSRSMGGSAIEEIMQIGGWKTESMAKYY 1022
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BLAST of mRNA_F-serratus_M_contig637.17277.1 vs. uniprot
Match: UPI00148A6DEA (uncharacterized protein LOC117691581 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A6DEA)

HSP 1 Score: 104 bits (260), Expect = 1.990e-21
Identity = 93/319 (29.15%), Postives = 141/319 (44.20%), Query Frame = 1 
Query:    4 SPEVVVEWLCFLDSQGNGTTIVHATSCPQVGQYSLSCSDSAFGCTRRYAFGSLQKSFVSKLKRAYVEILGRFEDWSPQDMRGNPVTGAVVDQYLAFTTQEQLRAGVTPKQA-PLIL---RPDFQHLMRDMHTGLLYAAQPGVRLAYARDMALFAVAFRAGSRGNDLAKLLAAQVLHLPSSQGLVLNFHFTKTLRDGAAHASLLAPDNDMPETCAVAAMLRYAQAAESCDWDMSKGYLFPEIQDSGKHTPKRLARPLSAKAMAARFKEHLGRAGLGARQFTFHSFRVGCAVTQTI--AGKDIAEIMAAVNWKSEKTVRRY 942
            +P  +  +L + D  G   T VH+  C Q+G       DS   C +R A  S+ ++ +  L    +E+ GR   +      GNP     +  YL    +EQ +A + PKQA P  L       + + R++    L   +   R    RD ALF + F AG R +D+A  L  +V +L    G   N  F KTLR      + +         C V  + RY   A+    DMS GYLF  + +SG+     +  P+S  ++  R K +L   G+   + T HS R GCAV      A  D+ ++M  V W +E + + Y
Sbjct:  181 TPHDIKRFLVWKDRFGK--TTVHSYKCKQLGI----TGDSTCKCPKRLAAASV-RNIIQHLVDI-LELEGRGRAYDEYCGVGNPAASVQIKGYLKCVQEEQAKAHILPKQAKPFFLTKLETISKFISRELGRSDLTLKE---RFVLIRDQALFKLQFFAGDRASDIAITLLQEVKYLRKKDGFAFNHTFGKTLRGNGKTNTFVIKCCPNETICPVRGLERYFAEAKRLGIDMSSGYLFRMVTESGRV----INEPMSYSSIYERLKCYLITLGIDEGE-TPHSLRAGCAVHMCFSNAAHDVHDLMNHVGWATESSAKYY 483
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BLAST of mRNA_F-serratus_M_contig637.17277.1 vs. uniprot
Match: A0A8B6BYV7_MYTGA (ALOG domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BYV7_MYTGA)

HSP 1 Score: 82.0 bits (201), Expect = 4.250e-14
Identity = 57/181 (31.49%), Postives = 88/181 (48.62%), Query Frame = 1 
Query:  409 PGVRLAYARDMALFAVAFRAGSRGNDLAKLLAAQVLHLPSSQGLVLNFHFTKTLRDGAAHA-SLLAPDNDMPETCAVAAMLRYAQAAESCDWDMSKGYLFPEIQDSGKHTPKRLARPLSAKAMAARFKEHLGRAGLGARQFTFHSFRVGCAVTQTIA--GKDIAEIMAAVNWKSEKTVRRY 942
            P V      D A F + + AG R +DL+ ++A +V  L    G V    F KTLR     + S +    D    C V  +L + Q A SC+ D++KGYLF  + +SG+     L +P+S   +  R + +L   G+   + T HSFR GC VT  ++    ++ E+M  V W  + +   Y
Sbjct:  109 PAVSPVIKEDQAWFKLQYFAGDRASDLSIVVAQEVKFLKDGSGFVFQHTFGKTLRGKKGRSNSFVIKRCDDNVVCPVKGLLDFVQFAHSCNVDLTKGYLFRVVSESGRV----LEKPVSYSVVYERLRYYLSTLGIYEGE-TPHSFRSGCTVTMALSDSASNVDEVMNHVGWFGKASAEYY 284
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BLAST of mRNA_F-serratus_M_contig637.17277.1 vs. uniprot
Match: UPI001458CB97 (uncharacterized protein LOC117330000 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458CB97)

HSP 1 Score: 73.6 bits (179), Expect = 1.150e-11
Identity = 57/173 (32.95%), Postives = 87/173 (50.29%), Query Frame = 1 
Query:  433 RDMALFAVAFRAGSRGNDLAKLLAAQVLHLPSSQGLVLNFHFTKTLRDGAAHASLLAPDN-DMPETCAVAAMLRYAQAAESCDWDMSKGYLFPEIQDSGKHTPKRLARPLSAKAMAARFKEHLGRAGLGARQFTFHSFRVGCAVTQTIAGK-DIAE-IMAAVNWKSEKTVRRY 942
            RD A F + F AG R +DL+ ++  ++  L  + GLV    F KTLR     ++       D    C V  +L + Q A+S   D++ GYLF  + DSG+   K +    S   +  R + +L   GL   + T HSFR GCAVT  ++G  D AE +M  + W ++++   Y
Sbjct:   43 RDQAWFKLQFFAGDRASDLSVIVTQEIKVLNDNSGLVFQHTFGKTLRGSKGRSNTFVIKLCDDKLVCPVRGLLDFLQFAKSSGVDLTTGYLFRVVSDSGRVLDKHV----SYSVVYERLRYYLVVLGLYEGE-TPHSFRSGCAVTMALSGSVDHAEQMMTHLGWFTKESAEYY 210
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig637.17277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JIS8_9PHAE4.130e-6443.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
UPI00148A6DEA1.990e-2129.15uncharacterized protein LOC117691581 n=1 Tax=Crass... [more]
A0A8B6BYV7_MYTGA4.250e-1431.49ALOG domain-containing protein n=1 Tax=Mytilus gal... [more]
UPI001458CB971.150e-1132.95uncharacterized protein LOC117330000 n=1 Tax=Pecte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig637contigF-serratus_M_contig637:342851..343792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score104.8
Seed ortholog evalue7.7e-20
Seed eggNOG ortholog7739.XP_002592500.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF640)
EggNOG OGs3AMDY@33154,3C0VI@33208,KOG0297@1,KOG0297@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size942
Cds size942
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931970.2775455-CDS-F-serratus_M_contig637:342850..3437921622931970.2775455-CDS-F-serratus_M_contig637:342850..343792Fucus serratus maleCDSF-serratus_M_contig637 342851..343792 -
1690964082.1131139-CDS-F-serratus_M_contig637:342850..3437921690964082.1131139-CDS-F-serratus_M_contig637:342850..343792Fucus serratus maleCDSF-serratus_M_contig637 342851..343792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig637.17277.1prot_F-serratus_M_contig637.17277.1Fucus serratus malepolypeptideF-serratus_M_contig637 342851..343792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig637.17277.1

>prot_F-serratus_M_contig637.17277.1 ID=prot_F-serratus_M_contig637.17277.1|Name=mRNA_F-serratus_M_contig637.17277.1|organism=Fucus serratus male|type=polypeptide|length=314bp
ASPEVVVEWLCFLDSQGNGTTIVHATSCPQVGQYSLSCSDSAFGCTRRYA
FGSLQKSFVSKLKRAYVEILGRFEDWSPQDMRGNPVTGAVVDQYLAFTTQ
EQLRAGVTPKQAPLILRPDFQHLMRDMHTGLLYAAQPGVRLAYARDMALF
AVAFRAGSRGNDLAKLLAAQVLHLPSSQGLVLNFHFTKTLRDGAAHASLL
APDNDMPETCAVAAMLRYAQAAESCDWDMSKGYLFPEIQDSGKHTPKRLA
RPLSAKAMAARFKEHLGRAGLGARQFTFHSFRVGCAVTQTIAGKDIAEIM
AAVNWKSEKTVRRY
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mRNA from alignment at F-serratus_M_contig637:342851..343792-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig637.17277.1 ID=mRNA_F-serratus_M_contig637.17277.1|Name=mRNA_F-serratus_M_contig637.17277.1|organism=Fucus serratus male|type=mRNA|length=942bp|location=Sequence derived from alignment at F-serratus_M_contig637:342851..343792- (Fucus serratus male)
GCCTCCCCCGAAGTGGTGGTAGAGTGGCTGTGCTTCCTCGATTCGCAAGG
CAACGGAACTACGATCGTACACGCGACCTCATGCCCTCAGGTGGGACAGT
ATTCCCTCTCCTGTTCCGACAGCGCGTTCGGCTGTACACGGCGTTATGCG
TTCGGATCACTGCAAAAGTCGTTCGTATCCAAACTTAAGCGGGCATACGT
AGAAATCCTAGGGCGCTTCGAAGATTGGTCACCACAGGACATGAGAGGTA
ACCCAGTGACGGGGGCCGTGGTCGATCAATACCTTGCCTTTACGACGCAG
GAGCAACTGAGGGCGGGGGTCACACCCAAGCAGGCGCCTCTTATCCTACG
CCCTGACTTCCAGCATCTAATGCGCGACATGCACACCGGTCTTCTCTACG
CTGCGCAACCAGGCGTCCGTCTAGCTTACGCCCGCGACATGGCTTTGTTT
GCGGTAGCATTCCGCGCCGGCAGCCGCGGCAACGACCTGGCCAAGCTCTT
AGCCGCACAGGTCCTGCATCTGCCTTCCAGTCAAGGGCTAGTTTTAAATT
TCCACTTTACGAAAACACTTCGAGATGGGGCCGCGCACGCCTCCCTCCTG
GCTCCCGACAATGACATGCCAGAGACGTGCGCGGTAGCGGCGATGCTACG
CTATGCGCAGGCTGCCGAGTCATGCGATTGGGATATGTCCAAGGGTTACC
TTTTCCCCGAAATACAAGATTCTGGTAAGCACACACCCAAACGGCTTGCT
AGACCCTTGTCCGCAAAAGCAATGGCAGCGCGCTTTAAGGAACACCTGGG
TCGCGCAGGTTTAGGGGCGCGGCAATTTACCTTCCATTCGTTTAGGGTGG
GGTGTGCTGTCACACAGACTATCGCAGGTAAGGATATCGCGGAAATTATG
GCGGCTGTCAACTGGAAGTCGGAGAAGACTGTACGCCGGTAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig637:342851..343792-

>mRNA_F-serratus_M_contig637.17277.1 ID=mRNA_F-serratus_M_contig637.17277.1|Name=mRNA_F-serratus_M_contig637.17277.1|organism=Fucus serratus male|type=CDS|length=1884bp|location=Sequence derived from alignment at F-serratus_M_contig637:342851..343792- (Fucus serratus male)
GCCTCCCCCGAAGTGGTGGTAGAGTGGCTGTGCTTCCTCGATTCGCAAGG
CAACGGAACTACGATCGTACACGCGACCTCATGCCCTCAGGTGGGACAGT
ATTCCCTCTCCTGTTCCGACAGCGCGTTCGGCTGTACACGGCGTTATGCG
TTCGGATCACTGCAAAAGTCGTTCGTATCCAAACTTAAGCGGGCATACGT
AGAAATCCTAGGGCGCTTCGAAGATTGGTCACCACAGGACATGAGAGGTA
ACCCAGTGACGGGGGCCGTGGTCGATCAATACCTTGCCTTTACGACGCAG
GAGCAACTGAGGGCGGGGGTCACACCCAAGCAGGCGCCTCTTATCCTACG
CCCTGACTTCCAGCATCTAATGCGCGACATGCACACCGGTCTTCTCTACG
CTGCGCAACCAGGCGTCCGTCTAGCTTACGCCCGCGACATGGCTTTGTTT
GCGGTAGCATTCCGCGCCGGCAGCCGCGGCAACGACCTGGCCAAGCTCTT
AGCCGCACAGGTCCTGCATCTGCCTTCCAGTCAAGGGCTAGTTTTAAATT
TCCACTTTACGAAAACACTTCGAGATGGGGCCGCGCACGCCTCCCTCCTG
GCTCCCGACAATGACATGCCAGAGACGTGCGCGGTAGCGGCGATGCTACG
CTATGCGCAGGCTGCCGAGTCATGCGATTGGGATATGTCCAAGGGTTACC
TTTTCCCCGAAATACAAGATTCTGGTAAGCACACACCCAAACGGCTTGCT
AGACCCTTGTCCGCAAAAGCAATGGCAGCGCGCTTTAAGGAACACCTGGG
TCGCGCAGGTTTAGGGGCGCGGCAATTTACCTTCCATTCGTTTAGGGTGG
GGTGTGCTGTCACACAGACTATCGCAGGTAAGGATATCGCGGAAATTATG
GCGGCTGTCAACTGGAAGTCGGAGAAGACTGTACGCCGGTATGCCTCCCC
CGAAGTGGTGGTAGAGTGGCTGTGCTTCCTCGATTCGCAAGGCAACGGAA
CTACGATCGTACACGCGACCTCATGCCCTCAGGTGGGACAGTATTCCCTC
TCCTGTTCCGACAGCGCGTTCGGCTGTACACGGCGTTATGCGTTCGGATC
ACTGCAAAAGTCGTTCGTATCCAAACTTAAGCGGGCATACGTAGAAATCC
TAGGGCGCTTCGAAGATTGGTCACCACAGGACATGAGAGGTAACCCAGTG
ACGGGGGCCGTGGTCGATCAATACCTTGCCTTTACGACGCAGGAGCAACT
GAGGGCGGGGGTCACACCCAAGCAGGCGCCTCTTATCCTACGCCCTGACT
TCCAGCATCTAATGCGCGACATGCACACCGGTCTTCTCTACGCTGCGCAA
CCAGGCGTCCGTCTAGCTTACGCCCGCGACATGGCTTTGTTTGCGGTAGC
ATTCCGCGCCGGCAGCCGCGGCAACGACCTGGCCAAGCTCTTAGCCGCAC
AGGTCCTGCATCTGCCTTCCAGTCAAGGGCTAGTTTTAAATTTCCACTTT
ACGAAAACACTTCGAGATGGGGCCGCGCACGCCTCCCTCCTGGCTCCCGA
CAATGACATGCCAGAGACGTGCGCGGTAGCGGCGATGCTACGCTATGCGC
AGGCTGCCGAGTCATGCGATTGGGATATGTCCAAGGGTTACCTTTTCCCC
GAAATACAAGATTCTGGTAAGCACACACCCAAACGGCTTGCTAGACCCTT
GTCCGCAAAAGCAATGGCAGCGCGCTTTAAGGAACACCTGGGTCGCGCAG
GTTTAGGGGCGCGGCAATTTACCTTCCATTCGTTTAGGGTGGGGTGTGCT
GTCACACAGACTATCGCAGGTAAGGATATCGCGGAAATTATGGCGGCTGT
CAACTGGAAGTCGGAGAAGACTGTACGCCGGTAT
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