mRNA_F-serratus_M_contig6366.17272.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6366.17272.1
Unique NamemRNA_F-serratus_M_contig6366.17272.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6366.17272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6366contigF-serratus_M_contig6366:7870..8998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size832
Cds size477
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6366.17272.1prot_F-serratus_M_contig6366.17272.1Fucus serratus malepolypeptideF-serratus_M_contig6366 8522..8998 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931969.294365-UTR-F-serratus_M_contig6366:7869..82181622931969.294365-UTR-F-serratus_M_contig6366:7869..8218Fucus serratus maleUTRF-serratus_M_contig6366 7870..8218 -
1690964081.677814-UTR-F-serratus_M_contig6366:7869..82181690964081.677814-UTR-F-serratus_M_contig6366:7869..8218Fucus serratus maleUTRF-serratus_M_contig6366 7870..8218 -
1622931969.3172786-UTR-F-serratus_M_contig6366:8517..85211622931969.3172786-UTR-F-serratus_M_contig6366:8517..8521Fucus serratus maleUTRF-serratus_M_contig6366 8518..8521 -
1690964081.687813-UTR-F-serratus_M_contig6366:8517..85211690964081.687813-UTR-F-serratus_M_contig6366:8517..8521Fucus serratus maleUTRF-serratus_M_contig6366 8518..8521 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931969.3367884-CDS-F-serratus_M_contig6366:8521..89981622931969.3367884-CDS-F-serratus_M_contig6366:8521..8998Fucus serratus maleCDSF-serratus_M_contig6366 8522..8998 -
1690964081.699396-CDS-F-serratus_M_contig6366:8521..89981690964081.699396-CDS-F-serratus_M_contig6366:8521..8998Fucus serratus maleCDSF-serratus_M_contig6366 8522..8998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6366.17272.1

>prot_F-serratus_M_contig6366.17272.1 ID=prot_F-serratus_M_contig6366.17272.1|Name=mRNA_F-serratus_M_contig6366.17272.1|organism=Fucus serratus male|type=polypeptide|length=159bp
SFGVAGTETVEYCAQHAPDACSKQCRIRGCCKKPSVKVAKTRTAGYCVQH
ARLQCGVEGFREREVGSHHSGKEAIGNVIPIGVKDTTVHPPPAETSHPLG
ACRDSRKRVRHLEIKPAESKRTVARESTAAVVTAPDVDTQKSPVKRNSSV
KTEVHLFL*
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mRNA from alignment at F-serratus_M_contig6366:7870..8998-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6366.17272.1 ID=mRNA_F-serratus_M_contig6366.17272.1|Name=mRNA_F-serratus_M_contig6366.17272.1|organism=Fucus serratus male|type=mRNA|length=1129bp|location=Sequence derived from alignment at F-serratus_M_contig6366:7870..8998- (Fucus serratus male)
TCTTTCGGAGTTGCAGGTACGGAAACTGTGGAGTACTGCGCGCAGCACGC
CCCAGACGCCTGCAGCAAGCAGTGCAGAATCAGAGGATGTTGCAAGAAAC
CATCGGTCAAAGTGGCCAAAACAAGAACGGCGGGGTACTGTGTGCAGCAC
GCCAGACTACAATGCGGTGTCGAAGGATTCAGGGAGAGAGAGGTTGGCTC
ACACCACTCCGGGAAGGAAGCCATTGGGAACGTAATCCCGATTGGCGTCA
AAGATACAACCGTTCATCCTCCCCCCGCTGAGACAAGCCACCCGCTGGGC
GCTTGCCGGGACTCTCGTAAGCGAGTGCGACACCTAGAAATTAAGCCTGC
GGAGTCGAAGCGGACTGTCGCACGAGAGTCGACTGCAGCAGTGGTGACTG
CGCCGGATGTCGACACGCAAAAATCTCCCGTCAAACGAAATTCTTCTGTC
AAGACGGAGGTTCATCTCTTCTTGTAGTCAGGTGCGCTACACGTGACCGC
CAACCCTACATGTTTAATATGAGTTTTTGTACTTACTTACTACGATTCCA
GTAACCACAGCTCGTTCGTTGGCTTCAAGTTTTATTCATACTGAACGCAT
GATCTGTCTCTTTCATGAATTTTGCGTAGTATTTCGTCACAATGGTATGA
CTTCAACTTAAGGGCCCCTCTTCCTCTTCGACCCTCGAGACCTTCAGCTG
CAGCCATTCCTTCACGAAACACGCCACTCGTGCTTATCCCCACGACCTTG
TTGTACCGTTCTCTCGTGTTTGGAATTCAGGTGCTGTTATTAAGAGCGTG
GTCATGATATTTATACTACAGCCGCCGAGATACTGATGGGTCTGGTGAGG
GTCCTACCGTATGTACGTAGGTAACAACTTGGTGCATTTTCCTTGGTACC
CTATTATCTAATGAGGATCGTTTCACTTGATATTTTATGAGTATGCGAGT
CTTTTATCCTTGAAGAACAGGTACTGTACTTGAACAATACCGCTGTAGCG
ACAAAAAGTATGGATAAGTTGCATTGGACCTGAGGGCAGTGCTAGTGAGG
ATGGCCTCCTCAACTCTTTGGCCATCGTGGTTCCGATTTCAAGGAAGGCG
AGCGTTTGTGTTTGGTAGTTCGTTTGCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6366:7870..8998-

>mRNA_F-serratus_M_contig6366.17272.1 ID=mRNA_F-serratus_M_contig6366.17272.1|Name=mRNA_F-serratus_M_contig6366.17272.1|organism=Fucus serratus male|type=CDS|length=954bp|location=Sequence derived from alignment at F-serratus_M_contig6366:7870..8998- (Fucus serratus male)
TCTTTCGGAGTTGCAGGTACGGAAACTGTGGAGTACTGCGCGCAGCACGC
CCCAGACGCCTGCAGCAAGCAGTGCAGAATCAGAGGATGTTGCAAGAAAC
CATCGGTCAAAGTGGCCAAAACAAGAACGGCGGGGTACTGTGTGCAGCAC
GCCAGACTACAATGCGGTGTCGAAGGATTCAGGGAGAGAGAGGTTGGCTC
ACACCACTCCGGGAAGGAAGCCATTGGGAACGTAATCCCGATTGGCGTCA
AAGATACAACCGTTCATCCTCCCCCCGCTGAGACAAGCCACCCGCTGGGC
GCTTGCCGGGACTCTCGTAAGCGAGTGCGACACCTAGAAATTAAGCCTGC
GGAGTCGAAGCGGACTGTCGCACGAGAGTCGACTGCAGCAGTGGTGACTG
CGCCGGATGTCGACACGCAAAAATCTCCCGTCAAACGAAATTCTTCTGTC
AAGACGGAGGTTCATCTCTTCTTGTAGTCTTTCGGAGTTGCAGGTACGGA
AACTGTGGAGTACTGCGCGCAGCACGCCCCAGACGCCTGCAGCAAGCAGT
GCAGAATCAGAGGATGTTGCAAGAAACCATCGGTCAAAGTGGCCAAAACA
AGAACGGCGGGGTACTGTGTGCAGCACGCCAGACTACAATGCGGTGTCGA
AGGATTCAGGGAGAGAGAGGTTGGCTCACACCACTCCGGGAAGGAAGCCA
TTGGGAACGTAATCCCGATTGGCGTCAAAGATACAACCGTTCATCCTCCC
CCCGCTGAGACAAGCCACCCGCTGGGCGCTTGCCGGGACTCTCGTAAGCG
AGTGCGACACCTAGAAATTAAGCCTGCGGAGTCGAAGCGGACTGTCGCAC
GAGAGTCGACTGCAGCAGTGGTGACTGCGCCGGATGTCGACACGCAAAAA
TCTCCCGTCAAACGAAATTCTTCTGTCAAGACGGAGGTTCATCTCTTCTT
GTAG
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