mRNA_F-serratus_M_contig636.17267.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig636.17267.1
Unique NamemRNA_F-serratus_M_contig636.17267.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig636.17267.1 vs. uniprot
Match: A0A6H5KGH9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGH9_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.030e-45
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    4 DVGKAKSAAAAAAARRLNPGLVIKPLEKKVGPETETFFDENFWESLDCVVNALDNVDGRLYVDSKCVDFGRPLLESGTLGTKGNTQVILPFQTES 288
            DVGKAKS AAAAAA R+NP L I+PLEKKVG +TE FFDE+FWES+DCVVNALDNV+ RLYVD+KCVDF RPLLESGTLGTKGNTQV+LPFQ+ES
Sbjct:  385 DVGKAKSVAAAAAAARMNPALKIRPLEKKVGADTEAFFDEDFWESVDCVVNALDNVEARLYVDTKCVDFARPLLESGTLGTKGNTQVVLPFQSES 479
[Close]
BLAST of mRNA_F-serratus_M_contig636.17267.1 vs. uniprot
Match: A0A7S3XY88_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY88_HETAK)

HSP 1 Score: 128 bits (322), Expect = 1.350e-35
Identity = 66/96 (68.75%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 ADVGKAKSAAAAAAARRLNPGLVIKPLEKKVGPETETFFDENFWESLDCVVNALDNVDGRLYVDSKCVDFGRPLLESGTLGTKGNTQVILPFQTES 288
            ADVG AKSAAAA AARRLNP   +  LEKKV PETE  FD  FWE L  V NALDNV+ RLYVD++CV  GRPLLESGTLG +G+TQV+LP ++ES
Sbjct:   30 ADVGSAKSAAAARAARRLNPDFQVVALEKKVAPETEDVFDAAFWEGLSGVSNALDNVEARLYVDARCVRHGRPLLESGTLGVRGSTQVVLPGRSES 125
[Close]
BLAST of mRNA_F-serratus_M_contig636.17267.1 vs. uniprot
Match: A8J1C1_CHLRE (Ubiquitin-activating enzyme E1 n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8J1C1_CHLRE)

HSP 1 Score: 131 bits (330), Expect = 1.440e-33
Identity = 60/95 (63.16%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    4 DVGKAKSAAAAAAARRLNPGLVIKPLEKKVGPETETFFDENFWESLDCVVNALDNVDGRLYVDSKCVDFGRPLLESGTLGTKGNTQVILPFQTES 288
            D+G +KS+ AAAAA+R+NPGL + PL+ +V P+TE+ FD+ FW+ LD VVNALDNV+ RLYVDS+CV FG+PLLESGTLG K NTQ+++P  TE+
Sbjct:  523 DIGSSKSSVAAAAAQRINPGLAVTPLQNRVSPDTESVFDDKFWQGLDLVVNALDNVNARLYVDSRCVYFGKPLLESGTLGPKCNTQMVIPRLTEN 617
[Close]
BLAST of mRNA_F-serratus_M_contig636.17267.1 vs. uniprot
Match: UPI001AA11B25 (ThiF family adenylyltransferase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001AA11B25)

HSP 1 Score: 122 bits (307), Expect = 5.130e-33
Identity = 65/98 (66.33%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:    1 ADVGKAKSAAAAAAARRLNPGLV--IKPLEKKVGPETETFFDENFWESLDCVVNALDNVDGRLYVDSKCVDFGRPLLESGTLGTKGNTQVILPFQTES 288
            ADVGK KS AAA A + +NP L   I  L+ KVGPETE  F+E+FW SLD V NALDNV+ R YVD +CV F +PLL+SGTLGTKGNTQV+LPF TES
Sbjct:   81 ADVGKLKSDAAAKAVQAMNPDLKGKIVTLQDKVGPETEHIFNEDFWNSLDGVTNALDNVEARTYVDRRCVFFRKPLLDSGTLGTKGNTQVVLPFITES 178
[Close]
BLAST of mRNA_F-serratus_M_contig636.17267.1 vs. uniprot
Match: A0A835XLJ1_9CHLO (UBA_e1_C domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XLJ1_9CHLO)

HSP 1 Score: 129 bits (323), Expect = 1.270e-32
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:    4 DVGKAKSAAAAAAARRLNPGLVIKPLEKKVGPETETFFDENFWESLDCVVNALDNVDGRLYVDSKCVDFGRPLLESGTLGTKGNTQVILPFQTES 288
            D+G +KS+ AAAAA RLNPGL +  L+ +V PETET FD+ FWE LD VVNALDNV+ RLYVDS+CV F +PLLESGTLG K NTQ+++P  TE+
Sbjct:  511 DIGSSKSSVAAAAALRLNPGLAVTALQNRVSPETETVFDDAFWEGLDLVVNALDNVNARLYVDSRCVYFAKPLLESGTLGPKCNTQMVIPRLTEN 605
[Close]
BLAST of mRNA_F-serratus_M_contig636.17267.1 vs. uniprot
Match: A0A6A6UU42_9PLEO (Ubiquitin-activating enzyme E1 1 n=1 Tax=Sporormia fimetaria CBS 119925 TaxID=1340428 RepID=A0A6A6UU42_9PLEO)

HSP 1 Score: 127 bits (320), Expect = 3.220e-32
Identity = 67/98 (68.37%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 ADVGKAKSAAAAAAARRLNPGLV--IKPLEKKVGPETETFFDENFWESLDCVVNALDNVDGRLYVDSKCVDFGRPLLESGTLGTKGNTQVILPFQTES 288
            ADVGK KS AAAAA + +NP L   I  L+ KVGPETE  F+E+FWESLD V NALDNV+ R YVD +CV F +PLL+SGTLGTKGNTQV+LPF TES
Sbjct:  495 ADVGKLKSTAAAAAVQVMNPELKGHIVTLQDKVGPETEDIFNEDFWESLDAVTNALDNVEARTYVDRRCVFFRKPLLDSGTLGTKGNTQVVLPFITES 592
[Close]
BLAST of mRNA_F-serratus_M_contig636.17267.1 vs. uniprot
Match: A0A7S3NJG6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJG6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 5.990e-32
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    4 DVGKAKSAAAAAAARRLNPGLVIKPLEKKVGPETETFFDENFWESLDCVVNALDNVDGRLYVDSKCVDFGRPLLESGTLGTKGNTQVILPFQTE 285
            D+GKAKS+ AA+AA  LNP L IKPLE +VG +TE  FD+ F+ SLD +  ALDNVD RLYVDSKCV +G+P+LESGTLGTKGNTQV++P  TE
Sbjct:  489 DIGKAKSSCAASAALELNPHLQIKPLELRVGTDTENVFDDAFYASLDGICTALDNVDARLYVDSKCVFYGKPMLESGTLGTKGNTQVVVPQITE 582
[Close]
BLAST of mRNA_F-serratus_M_contig636.17267.1 vs. uniprot
Match: A0A1Y1HI12_KLENI (E1 ubiquitin-activating enzyme n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HI12_KLENI)

HSP 1 Score: 126 bits (317), Expect = 8.170e-32
Identity = 60/95 (63.16%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:    4 DVGKAKSAAAAAAARRLNPGLVIKPLEKKVGPETETFFDENFWESLDCVVNALDNVDGRLYVDSKCVDFGRPLLESGTLGTKGNTQVILPFQTES 288
            ++G+AKSA AAAAA+ +NP L ++ L+ +V P+TE  FD+ FWE LD V+NALDNV+ RLYVDS+CV F +PLLESGTLGTK NTQ++LP QTE+
Sbjct:  513 NIGQAKSAVAAAAAKAINPELKVRALQNRVSPDTEDVFDDAFWEGLDVVINALDNVNARLYVDSRCVYFQKPLLESGTLGTKCNTQMVLPNQTEN 607
[Close]
BLAST of mRNA_F-serratus_M_contig636.17267.1 vs. uniprot
Match: A0A7R9IDY0_9NEOP (Hypothetical protein n=8 Tax=Timema TaxID=61471 RepID=A0A7R9IDY0_9NEOP)

HSP 1 Score: 126 bits (317), Expect = 8.180e-32
Identity = 59/95 (62.11%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:    4 DVGKAKSAAAAAAARRLNPGLVIKPLEKKVGPETETFFDENFWESLDCVVNALDNVDGRLYVDSKCVDFGRPLLESGTLGTKGNTQVILPFQTES 288
            DV +AKS  AA A RR+NP + I+  E +VGPETE F+D+NF+++LD + NALDNVD R+Y+D +CV + +PLLESGTLGTKGNTQV++PF+TES
Sbjct:  520 DVQRAKSQTAAKAVRRMNPDINIEAHENRVGPETERFYDDNFFQALDGIANALDNVDARIYMDRRCVYYRKPLLESGTLGTKGNTQVVVPFKTES 614
[Close]
BLAST of mRNA_F-serratus_M_contig636.17267.1 vs. uniprot
Match: Q1HPB7_THECC (Ubiquitin activating enzyme (Fragment) n=1 Tax=Theobroma cacao TaxID=3641 RepID=Q1HPB7_THECC)

HSP 1 Score: 115 bits (289), Expect = 1.050e-31
Identity = 54/95 (56.84%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:    4 DVGKAKSAAAAAAARRLNPGLVIKPLEKKVGPETETFFDENFWESLDCVVNALDNVDGRLYVDSKCVDFGRPLLESGTLGTKGNTQVILPFQTES 288
            ++G+AKS  AA+AA  +NP L I+ L+ +VGPETE  F++ FWE+L  V+NALDNV+ RLYVD +C+ F +PLLESGTLG K NTQ+++P  TE+
Sbjct:    2 NIGQAKSTVAASAAASINPQLKIEALQNRVGPETENVFNDTFWENLTVVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTEN 96
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig636.17267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGH9_9PHAE1.030e-4582.11Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S3XY88_HETAK1.350e-3568.75Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A8J1C1_CHLRE1.440e-3363.16Ubiquitin-activating enzyme E1 n=3 Tax=Chlamydomon... [more]
UPI001AA11B255.130e-3366.33ThiF family adenylyltransferase n=1 Tax=Escherichi... [more]
A0A835XLJ1_9CHLO1.270e-3265.26UBA_e1_C domain-containing protein n=1 Tax=Edaphoc... [more]
A0A6A6UU42_9PLEO3.220e-3268.37Ubiquitin-activating enzyme E1 1 n=1 Tax=Sporormia... [more]
A0A7S3NJG6_9STRA5.990e-3267.02Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1Y1HI12_KLENI8.170e-3263.16E1 ubiquitin-activating enzyme n=1 Tax=Klebsormidi... [more]
A0A7R9IDY0_9NEOP8.180e-3262.11Hypothetical protein n=8 Tax=Timema TaxID=61471 Re... [more]
Q1HPB7_THECC1.050e-3156.84Ubiquitin activating enzyme (Fragment) n=1 Tax=The... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig636contigF-serratus_M_contig636:296954..299006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score132.1
Seed ortholog evalue1.4e-28
Seed eggNOG ortholog3055.EDP01888
Preferred nameUBA1
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006464,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009506,GO:0009605,GO:0009607,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030054,GO:0032446,GO:0033554,GO:0036211,GO:0042221,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046686,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0070647,GO:0071704,GO:0071944,GO:0140096,GO:1901564
EggNOG free text desc.Belongs to the ubiquitin-activating E1 family
EggNOG OGs34H3A@3041,37Q5I@33090,COG0476@1,KOG2012@2759
EC6.2.1.45
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Exons3
Model size289
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig636.17267.1prot_F-serratus_M_contig636.17267.1Fucus serratus malepolypeptideF-serratus_M_contig636 296955..299006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931968.7076132-CDS-F-serratus_M_contig636:296954..2969811622931968.7076132-CDS-F-serratus_M_contig636:296954..296981Fucus serratus maleCDSF-serratus_M_contig636 296955..296981 -
1690964081.4215162-CDS-F-serratus_M_contig636:296954..2969811690964081.4215162-CDS-F-serratus_M_contig636:296954..296981Fucus serratus maleCDSF-serratus_M_contig636 296955..296981 -
1622931968.7284758-CDS-F-serratus_M_contig636:298125..2982961622931968.7284758-CDS-F-serratus_M_contig636:298125..298296Fucus serratus maleCDSF-serratus_M_contig636 298126..298296 -
1690964081.4371202-CDS-F-serratus_M_contig636:298125..2982961690964081.4371202-CDS-F-serratus_M_contig636:298125..298296Fucus serratus maleCDSF-serratus_M_contig636 298126..298296 -
1622931968.7463872-CDS-F-serratus_M_contig636:298916..2990061622931968.7463872-CDS-F-serratus_M_contig636:298916..299006Fucus serratus maleCDSF-serratus_M_contig636 298917..299006 -
1690964081.4593244-CDS-F-serratus_M_contig636:298916..2990061690964081.4593244-CDS-F-serratus_M_contig636:298916..299006Fucus serratus maleCDSF-serratus_M_contig636 298917..299006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig636.17267.1

>prot_F-serratus_M_contig636.17267.1 ID=prot_F-serratus_M_contig636.17267.1|Name=mRNA_F-serratus_M_contig636.17267.1|organism=Fucus serratus male|type=polypeptide|length=96bp
ADVGKAKSAAAAAAARRLNPGLVIKPLEKKVGPETETFFDENFWESLDCV
VNALDNVDGRLYVDSKCVDFGRPLLESGTLGTKGNTQVILPFQTES
back to top

mRNA from alignment at F-serratus_M_contig636:296954..299006-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig636.17267.1 ID=mRNA_F-serratus_M_contig636.17267.1|Name=mRNA_F-serratus_M_contig636.17267.1|organism=Fucus serratus male|type=mRNA|length=2053bp|location=Sequence derived from alignment at F-serratus_M_contig636:296954..299006- (Fucus serratus male)
GCGGACGTCGGAAAGGCTAAAAGCGCGGCGGCTGCCGCTGCGGCGAGGCG
GTTGAACCCCGGCCTCGTCATCAAGCCGCTGGAGAAAAAGGCGAGAATAA
TGGCTTGGGATGAGGGAGAGAGGGGGGGGGAGGATGGAGTTTGTCCCCGA
AGGCGGTGTAGAAGTGGGTCAGGGGGGGGATGGCCTCCCGTCCTCGAAGG
CGATACGGGGGAGGGGTTGAGGGGAGGGGTAACGGAGTTCTTTCGTCGAA
GGCGGTGGCGGTGCTGGGGGTACGTACCGTAGTAACCGTCGTAATGATTT
TCCGAGGCAGCGTGGAGAAGCACACGTAATTCGACGATGTGAGATCCCGA
CTGAGCCTTTTTTTTTTGCGAGGAGAACGACTTCCTTGGCCTGCATTGAT
GCCCTCCATCGAGCGGGGAACGCCCGTCCGCTAACCGTCTCCGGTGGGGC
ATTTAACTACAGTTGTGCTTAGCGTTGAGCCTGAGGATATACCGATAGTT
TTTTTCTGTATAAGGTTCGATGGTGCGATCGACGTCATTTCAGTACCTGC
GTCCTTAACTAAACTCAAGTAAACTAATATAAACGCCTCCTCGGGGTTTC
CGGTTCAAAAATATCGGTGAGCCGGCCACCCATATTTTTACCTACAAGTG
TCCGTACTTCGTACTTCGACTGCCACTCTGCGATACCTGGGGTACTGTAC
CTGACTGTAGGTGGGGCCTGAGACGGAAACGTTCTTCGACGAGAACTTCT
GGGAGTCGCTGGACTGCGTGGTGAACGCCCTCGACAACGTCGACGGCCGG
CTGTACGTAGACTCCAAGTGCGTCGACTTTGGGCGCCCGCTGCTGGAGTC
CGGCACGCTGGGCACGAAGGGAAACACTCAGGTGGGAGAGGTTTGCTTCA
AGAAAGAACCACAGACGAGGACACGGTCGTAGCCACCTGATACAATAGTA
GGCTCCCTGCTTTCGAAGCCTGCCCACCTCAATCTTCTCGGGAAAAAATG
TTGAGGGAAGCGAATGGAGGGGGGAGGGAGTACTGTTACTGCAGAATATG
TGCCAGGGAGTTGAGTCTACGGCGAAGGAACTGGGAGAACAATGGGTGAT
GATATATATATGTATATATATAGCTAAGTTTTTATTTATTTATTTTTATT
TTTGATCCCAATTGGTCGATCATGTAAAATTTGGCACTTTCCCTTATATT
GTCGACGGTAGGACCCGAACCTGCGCAAGATTTTTACAGCAGGTTTAACG
AGGTTGGGAAGGGGTGATTACCGGTACTTTCAACATATGCTATAACCACT
TCATAACCATTAGTGGGTGTGGAAAGAGAGGCGTATATTAATTGGTCCAT
GGTGACCTGTCAAGGCAGCACTTGTTCGGAAATACCTTGAAGACTACTGG
TCTTGTGCCGGCGGACTCTCGGCAGTGAACGTCATCGGTACGCAATCGCG
CGGCCCGATAAACTCGAGACTGACCCGATGGCGTATGGCGTTTCAAATTC
ATAAATGGACGCCGCCGCGGAACTCGGGAGGAACCCCATAAGTAAGCACC
AGATTCAGCCTGAGTGTGGAGATGAGCAGGCTGACGCAGGGACGGGACTG
CCGAACCCGTCTCGCGAGACCAAATTTTCAGACGCGAACGGGGACAGGGA
ATATTCATTTTCTCTGTTCAGCTGACCACGAGCAGGATTGGTAACCTTAC
CCGGTTGATCCGTACTCTTGCTATATGTGTGACCATCCCGTCGATATTAT
TTTTTCGTTTGTCCGCGAGTGGTTTGACGGACGTCAACCCTTCTTTCACT
CAAGATTGAATGTAACTCTTCTTGGCCATGCGGCTACATTGTTTCATTGT
TTTGTCGATTGGTTACACGATTGGTTCTACCGATTGATTGATGAGTTCAT
TTTTTTTTACTGATTTATTTATTCAATCTATTGATTGATTTACTTCCACG
TCTTTCTTCATTTATCGAATCACACCGTACTTGAGTTTTTCGTTTTCGTT
GTTTCGTTTTTTTTTTAAATCTCAGGTGATTCTACCCTTTCAAACGGAGT
CGT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig636:296954..299006-

>mRNA_F-serratus_M_contig636.17267.1 ID=mRNA_F-serratus_M_contig636.17267.1|Name=mRNA_F-serratus_M_contig636.17267.1|organism=Fucus serratus male|type=CDS|length=576bp|location=Sequence derived from alignment at F-serratus_M_contig636:296954..299006- (Fucus serratus male)
GCGGACGTCGGAAAGGCTAAAAGCGCGGCGGCTGCCGCTGCGGCGAGGCG
GTTGAACCCCGGCCTCGTCATCAAGCCGCTGGAGAAAAAGGCGGACGTCG
GAAAGGCTAAAAGCGCGGCGGCTGCCGCTGCGGCGAGGCGGTTGAACCCC
GGCCTCGTCATCAAGCCGCTGGAGAAAAAGGTGGGGCCTGAGACGGAAAC
GTTCTTCGACGAGAACTTCTGGGAGTCGCTGGACTGCGTGGTGAACGCCC
TCGACAACGTCGACGGCCGGCTGTACGTAGACTCCAAGTGCGTCGACTTT
GGGCGCCCGCTGCTGGAGTCCGGCACGCTGGGCACGAAGGGAAACACTCA
GGTGGGGCCTGAGACGGAAACGTTCTTCGACGAGAACTTCTGGGAGTCGC
TGGACTGCGTGGTGAACGCCCTCGACAACGTCGACGGCCGGCTGTACGTA
GACTCCAAGTGCGTCGACTTTGGGCGCCCGCTGCTGGAGTCCGGCACGCT
GGGCACGAAGGGAAACACTCAGGTGATTCTACCCTTTCAAACGGAGTCGG
TGATTCTACCCTTTCAAACGGAGTCG
back to top