mRNA_F-serratus_M_contig636.17262.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig636.17262.1 vs. uniprot
Match: D8LSS5_ECTSI (Neural cell expressed, developmentally down-regulated 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS5_ECTSI) HSP 1 Score: 249 bits (636), Expect = 8.640e-66 Identity = 143/304 (47.04%), Postives = 187/304 (61.51%), Query Frame = 3
Query: 366 MDSLVSCSDVVKIWDTGGWKLGQSTTMTMQNAVTNSCC---WVSNGQAVVTAGSSGFITVVKPSGIIVPTKMSSAHDLPINAVAVSPGARKVATAGDAGEIEIWSTKSKGKMKVDTLKQGSPVTCVSFLDSESHLAAGDSDGRVLLHRLKDAADDNAPESPSPVSLPPVGAHSGVLDLSVRSAA--PTMVGVAHSDGAVRLWETGRGGNCIQEIKGQHRGAATGIDFSPNGHNLFATVGADGRVRYMDIRVGEKSGR-----VLRSIETRVPLTCLSFHNEGHVLSVGASDGTIRLIDLRTASQ 1247
M SL +CSDV+++WDTG W NGQ V TAG +G ITV+K SG IVP + SAH+ I + S +RK+A GDAG +E+W K + +V PVTCVSF D +S +AAGD G+V+LHR+ DA D+ + +LPP G +S V LS+ SAA P M+GV+++DG VRLW+TG C++E++ QHRGAA GI F P NL AT G DG VR D+RVGE+ VL+SI+T PLTC+SFH+EG L+ GASDGT+RL+DLRTA +
Sbjct: 1 MSSLATCSDVIRLWDTGXXXXXXXXXXXXXXXXXXXXXXXXWNHNGQVVATAGDNGSITVLKLSGSIVPAGVLSAHEKAIRGITFSSKSRKLAAGGDAGVVEVWDLK-RNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASA----TLPPAGGYSSVTGLSMASAAAGPAMLGVSYADGTVRLWDTGSRA-CVREMQTQHRGAAAGIVFHPQNPNLVATAGHDGVVRCTDVRVGERKDGGGGDGVLKSIQTDAPLTCVSFHHEGLALAAGASDGTVRLVDLRTARE 298
BLAST of mRNA_F-serratus_M_contig636.17262.1 vs. uniprot
Match: D2V7A1_NAEGR (WD40 repeat domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V7A1_NAEGR) HSP 1 Score: 90.1 bits (222), Expect = 2.130e-14 Identity = 62/275 (22.55%), Postives = 125/275 (45.45%), Query Frame = 3
Query: 423 KLGQSTTMTMQNAVTNSCCWVSNGQAVVTAGSSGFITVVKPSGIIVPTKMSSAHDLPINAVAVSPGARKVATAGDAGEIEIWSTKSKGKMKVDTLKQGSPV-TCVSFLDSESHLAAGDSDGRVLLHRLKDAADDNAPESPSPVSLPPVGAHSGVLDLSVRSAAPTMVGVAHSDGAVRLWETGRGGNCIQEIKGQHRGAATGIDFSPNGHNLFATVGADGRVRYMDIRVGEKSGRVLRSIETRVPLTCLSFHNEGHVLSVGASDGTIRLIDLRTAS 1244
KL ++ N N W N + +++ G + + P G I K++ + ++++ + K+ + G + ++IW K K ++T K + TCV+F + + H+A+GD+ G +L+H + + +S + L T++ A DG+V +W+T G QH+ + FS L A+ G D + + DI K +++ +I P++ S+ + G +++VG S+G++ L DL+ ++
Sbjct: 67 KLSPYNSLNFPNRTINDTKWNHNNKVLISCSDDGSVIMGTPEGEIF-GKLNIEEQ--VQSISIGESSLKLCSGGSSCIVKIWDLKKKEV--INTFKGHKEIITCVTFSEGDQHVASGDASGTILIHNIVS----------NTLSCTLSNTQQSIKFLEYSPFYKTLLASASDDGSVTIWDT-ISGKPYCSFPNQHQAPCVAVHFSKQNVALLASAGLDKNIYFYDI----KEKKIVENIRVSQPISSFSYLDNGSIMAVGTSNGSVFLYDLKKST 321
BLAST of mRNA_F-serratus_M_contig636.17262.1 vs. uniprot
Match: I0YIR8_COCSC (WD40 repeat-like protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YIR8_COCSC) HSP 1 Score: 73.6 bits (179), Expect = 1.730e-9 Identity = 67/266 (25.19%), Postives = 123/266 (46.24%), Query Frame = 3
Query: 468 NSCCWVSNGQAVVTAGSSGFITVVKPSGIIVPTKMSSAHDLP----INAVAVSPGARKVATAGDAGEIEIWSTKSKGKMKVDTLKQGSPVTCVSFLDSESHLAAGDSDGRVLLHR---LKDAADDNAPESP-SPVSLPPVGAHSGVLDLSVRSAAPTMVGVAHSDGAVRLWETGRGGNCIQEIKGQHRGAATGIDFSPNGHNLFATVGADGRVRYMDIRVGEKSG--RVLRSIETRVPLTCLSFHNEGHVLSVGASDGTIRLIDLR 1235
N W +NG+A+ +GS+G ++V +P+G + + S + ++ ++ S G++ +A G + +WS + ++ + + VT +SF LA+ G++LLH +K A + +P + ++ P+ +L S R+ A + H+ +R E E H+G A + F NL + GADG + +D R+G + R RS+ T L H++GH ++VG + G + L D R
Sbjct: 43 NGVAWNANGKAIAASGSTGHVSVYRPTGESIGSLPSPGDETSLMGEVSCLSFSRGSKLLAAGCLDGLVHVWSLNQQERV-LRLIDHVDAVTSISFSPDGRTLASSSVSGQLLLHNTEGIKKARLQSRNLAPITCITYAPLSFEKQLLACSTRTGAVEV----HALNELRPGE---------EHPNLHKGPAAAVRFVDGMGNLLISAGADGSLVLIDRRLGGMAACARTGRSLST------LDMHHDGHSIAVGTTGGGVLLYDAR 288
BLAST of mRNA_F-serratus_M_contig636.17262.1 vs. uniprot
Match: UPI001989FE28 (Uncharacterized protein n=2 Tax=Kitasatospora xanthocidica TaxID=83382 RepID=UPI001989FE28) HSP 1 Score: 59.7 bits (143), Expect = 5.380e-5 Identity = 69/221 (31.22%), Postives = 97/221 (43.89%), Query Frame = 3
Query: 594 INAVAVSPGARKVATAGDAGEIEIWSTKSKGKMKVDTLKQGSPVTCVSFLDSESHLAAG---DSDGRVLLHRLKDAADDNAPESPSPVSLPP--VGAHSGVLDLSV-RSAAPTMVGVAHSD--GAVRLWETGRGGNCIQEIKGQHRGAATGIDFSPNGHNLFATVGADGRVRYMDIRVGEKS---GRVLRSIETRVPLTCLSFHNEGHVLSVGASDGTIRL 1223
+NA+A+SP R VAT G + +W T + + + G PV V F LAA D RVLL R+ D PSPV +PP GA + L+ R A G + +D G V +W T G H G G+ F GH + A+ DG V D+ ++ V+ S + P + L+F +G +L+VG G IRL
Sbjct: 31 VNALALSPDGRLVATGDSRGRVALWDTATTALVAELQGEVGHPVQDVEFSPDGRLLAAALTRDPQRRVLLWRVADRQ-----RLPSPV-MPPSATGASTVAKRLAFSRDGALLAAGTSDADLPGRVWVWRTDAGAAPPVRTLVDHAGVIQGLGFGA-GHRI-ASAATDGTVLVRDLDAPARADGGAPVVFSGRSPSPRS-LAFAADGGLLAVGDEQGGIRL 242 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig636.17262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig636.17262.1 >prot_F-serratus_M_contig636.17262.1 ID=prot_F-serratus_M_contig636.17262.1|Name=mRNA_F-serratus_M_contig636.17262.1|organism=Fucus serratus male|type=polypeptide|length=1207bp MAMDSLVSCSDVVKIWDTGGWKLGQSTTMTMQNAVTNSCCWVSNGQAVVTback to top mRNA from alignment at F-serratus_M_contig636:218094..230742+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig636.17262.1 ID=mRNA_F-serratus_M_contig636.17262.1|Name=mRNA_F-serratus_M_contig636.17262.1|organism=Fucus serratus male|type=mRNA|length=12649bp|location=Sequence derived from alignment at F-serratus_M_contig636:218094..230742+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig636:218094..230742+ >mRNA_F-serratus_M_contig636.17262.1 ID=mRNA_F-serratus_M_contig636.17262.1|Name=mRNA_F-serratus_M_contig636.17262.1|organism=Fucus serratus male|type=CDS|length=7242bp|location=Sequence derived from alignment at F-serratus_M_contig636:218094..230742+ (Fucus serratus male)back to top |