mRNA_F-serratus_M_contig636.17261.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig636.17261.1
Unique NamemRNA_F-serratus_M_contig636.17261.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig636.17261.1 vs. uniprot
Match: D8LSS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS4_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.780e-23
Identity = 130/395 (32.91%), Postives = 155/395 (39.24%), Query Frame = -2 
Query:  216 LHFAPAGVLQLLGMPHCREFVEALPATARTRLLELYEGVFPD-RVPPIGRLYVPLSTTHCPSTPPPRLDRETELSQSSEPCEAEPSSSQDGDERKKPLWGSRRYFTDEAVDAGRNRETAASSCGSXXXXXXXPLLGALIYPLPVHAVRELLQVHVATTRAV-------YAFGVEGKISCPRQLRCRRTSGLLEPSPPMSMLARGPPGSANEEDRNLGGLIGVRDAEEKSSCAVRPGLAAGRAGSGGHQSEDAGLVSVRERSRLGLPATPPSAVDLLPD-----SSSPWNRGRYRVDFPLSLQRS-------RIGGDTAELAFRRPSSVTGEVTGEKPRPGGGCRGVTNR---------DKGA--PIASSLRASLRHTYVAVLTPQI--PPASVAS 1301
            LHFAPAGV QLLG  HCREFV+ALP  AR R+L L +  FPD  +PPIG LYVPL+    P+ P                                                G++  TA S           PLLGAL+ PLP  AVRELLQ++VATTRAV                                   P++   RG   S  E+D       G  D     S     G   GR    G               R  L ATPPSAVD+LPD     SS+P          P+ + R+          GD  E A   P+S  GEV  +             R         D GA  PI+SSLRA  RHTYVAVL P +  PP+  +S
Sbjct:  702 LHFAPAGVRQLLGTAHCREFVKALPPPARARVLALTQA-FPDGTLPPIGHLYVPLA----PARP------------------------------------------------GKDTLTAGSG---------PPLLGALVQPLPARAVRELLQIYVATTRAVGEAEGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXTPLTARDRGVVRSGCEDD------AGTDDGGHTESRRWSSGGQPGR--EEGSXXXXXXXXXXXXXDRANLAATPPSAVDVLPDEPPTSSSAP----------PVGIGRTGTRPAAPSCPGDGVEGADGGPTSSGGEVPADNVEDDAEAAWSARRRRTPLCSTADSGADAPISSSLRAPFRHTYVAVLAPPLAQPPSPFSS 1016
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BLAST of mRNA_F-serratus_M_contig636.17261.1 vs. uniprot
Match: A0A6H5LGS9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGS9_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.230e-22
Identity = 140/439 (31.89%), Postives = 165/439 (37.59%), Query Frame = -2 
Query:  129 LHFAPAGVLQLLGMPHCREFVEALPATARTRLLELYEGVFPD-RVPPIGRLYVPLSTTHCPSTPPPRLDRETELSQSSEPCEAEPSSSQDGDERKKPLWGSRRYFTDEAVDAGRNRETAASSCGSXXXXXXXPLLGALIYPLPVHAVRELLQVHVATTRAV-------YAFGVEGKISCPRQLRCRRTSGLLEPSPPMSMLARGPPGSANEEDRNLGGLIGVRDAEEKSSCAVRPGLAAGRAGSGGHQSEDAGLVSVRERSRLGLPATPPSAVDLLPD------SSSPWNRGR--YRVDFPLSLQRSRIGGDTAELAFRRPSSVTGEVTGEKPRPGGGCRGVTNR---------DKGA--PIASSLRASLRHTYVAVLTPQIPPA---------------------SVASGKALAASGTAHGDLLLAAKSLLLQVETPV 1301
            LHFAPAGVLQLLG PH REFV+ALP  AR  +L L + VFPD  +PPIG LYVPL+    P+ P                                                G++  TA S           PLLGAL+ PLP  AVRELLQ++VATTRAV                                   P++   RG   S  ++D         R  +                                   R  L ATPPSAVD+LPD      S+ P   GR   R   P         GD  E A   P+S  GEV  +             R         D GA  PI+SSLRA  RHTYVAVL P  PPA                     SV + KA AA        L  A +L+LQ+ETPV
Sbjct:  891 LHFAPAGVLQLLGTPHYREFVKALPPPARAHVLALTQ-VFPDGTLPPIGHLYVPLA----PARP------------------------------------------------GKDTLTAGSG---------PPLLGALVQPLPARAVRELLQIYVATTRAVGEAEGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXTPLTARDRGVVRSGCDDD--------ARTDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRANLAATPPSAVDVLPDEPPTSSSAPPVGIGRPGTRPAAPA------CPGDGVEGADGGPTSSGGEVPADNVEDDAEAAWSARRRRTPLCSTADSGADAPISSSLRAPFRHTYVAVLAP--PPAQPPXXXXXXXXXXXXXXXXGQSVTTNKARAADCGRGQTPLSGASALILQLETPV 1251
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig636.17261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSS4_ECTSI1.780e-2332.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LGS9_9PHAE4.230e-2231.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig636contigF-serratus_M_contig636:202606..204153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1548
Cds size822
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931966.041312-CDS-F-serratus_M_contig636:202605..2034271622931966.041312-CDS-F-serratus_M_contig636:202605..203427Fucus serratus maleCDSF-serratus_M_contig636 202606..203427 +
1690964079.9672868-CDS-F-serratus_M_contig636:202605..2034271690964079.9672868-CDS-F-serratus_M_contig636:202605..203427Fucus serratus maleCDSF-serratus_M_contig636 202606..203427 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931966.0584042-UTR-F-serratus_M_contig636:203427..2041531622931966.0584042-UTR-F-serratus_M_contig636:203427..204153Fucus serratus maleUTRF-serratus_M_contig636 203428..204153 +
1690964079.9792829-UTR-F-serratus_M_contig636:203427..2041531690964079.9792829-UTR-F-serratus_M_contig636:203427..204153Fucus serratus maleUTRF-serratus_M_contig636 203428..204153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig636.17261.1prot_F-serratus_M_contig636.17261.1Fucus serratus malepolypeptideF-serratus_M_contig636 202606..203427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig636.17261.1

>prot_F-serratus_M_contig636.17261.1 ID=prot_F-serratus_M_contig636.17261.1|Name=mRNA_F-serratus_M_contig636.17261.1|organism=Fucus serratus male|type=polypeptide|length=274bp
LPSSTLEYSTSAPAPSSFPCKPFVAADVLPSAPFLPLGRRRLRTGVSTCN
KSDLAARRRSPCAVPDAARAFPDATDAGGIWGVRTATYVWRRDARREEAI
GAPLSRFVTPRQPPPGRGFSPVTSPVTDDGRRKASSAVSPPIRERWSESG
KSTRYLPRFQGLEESGSKSTADGGVAGRPSLERSLTLTRPASSLWWPPLP
ALPAANPGRTAQLDFSSASRTPIKPPRFLSSSLAEPGGPRANIDIGGEGS
SRPEVRRHRSWRGHEIFPSTPNA*
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mRNA from alignment at F-serratus_M_contig636:202606..204153+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig636.17261.1 ID=mRNA_F-serratus_M_contig636.17261.1|Name=mRNA_F-serratus_M_contig636.17261.1|organism=Fucus serratus male|type=mRNA|length=1548bp|location=Sequence derived from alignment at F-serratus_M_contig636:202606..204153+ (Fucus serratus male)
CTTCCATCATCTACGTTGGAATATTCAACCTCGGCTCCGGCTCCATCCTC
CTTCCCGTGCAAGCCCTTTGTAGCGGCCGACGTGCTGCCGTCTGCCCCCT
TTTTGCCGCTTGGGCGCCGCCGGCTTCGGACAGGGGTCTCCACCTGTAAC
AAAAGCGACTTGGCTGCCAGAAGGAGATCCCCGTGCGCGGTCCCCGATGC
CGCTAGAGCTTTTCCAGACGCCACCGACGCTGGAGGTATCTGGGGAGTAA
GGACGGCTACGTACGTGTGGCGGAGGGACGCTCGAAGAGAAGAGGCGATT
GGCGCGCCTTTGTCTCGATTCGTCACACCACGGCAACCACCGCCTGGCCG
GGGTTTTTCTCCTGTTACTTCGCCTGTTACGGACGACGGCCGCCGAAAAG
CGAGCTCCGCGGTGTCGCCGCCAATCCGCGAACGCTGGAGCGAAAGTGGA
AAATCAACTCGGTACCTGCCGCGGTTCCAAGGGCTCGAAGAATCGGGGAG
CAAGTCAACCGCCGACGGCGGCGTCGCGGGGAGGCCGAGCCTTGAACGCT
CCCTCACGCTCACAAGGCCAGCGTCTTCACTCTGGTGGCCACCACTGCCG
GCTCTACCCGCAGCCAACCCCGGGCGCACGGCACAGCTTGACTTCTCTTC
GGCGTCACGAACTCCAATTAAGCCCCCTAGGTTTCTATCTTCTTCGTTGG
CCGAGCCAGGCGGCCCGCGTGCCAACATTGACATCGGCGGCGAAGGTTCG
AGCAGACCCGAGGTTCGGCGGCACCGGAGCTGGCGAGGGCATGAGATTTT
TCCCTCGACGCCAAACGCGTAGACTGCCCGGGTCGTGGCCACGTGGACCT
GTAGCAGCTCTCGCACCGCGTGCACGGGGAGGGGATAGATCAGGGCACCC
AGGAGGGGCCCCGACCCCGACCCCGACCCCGAACCACAACTCGACGCGGC
CGTCTCCCTGTTCCTGCCGGCGTCTACGGCCTCGTCAGTAAAATACCGTC
GCGATCCCCAAAGCGGCTTTTTCCTCTCGTCACCATCCTGACTCGAGGAT
GGTTCCGCCTCGCACGGCTCGCTTGACTGCGAAAGTTCTGTCTCTCGGTC
GAGCCGCGGTGGCGGTGTGCTTGGACAGTGTGTCGTGCTCAGTGGGACGT
AAAGGCGGCCGATCGGGGGTACTCGGTCCGGAAAGACTCCTTCATACAGC
TCGAGAAGGCGCGTGCGCGCCGTGGCGGGGAGAGCCTCCACGAACTCCCG
GCAGTGTGGCATCCCGAGAAGCTGCAGCACCCCGGCGGGGGCGAAGTGCA
GCGACGCGGACTCCAGCTTTTGCAACTGACCTCTCGCGGTCGCCTTCGCC
GGAGGATTCCCTGCCCTGACACGAGCGACAAGCACGTTGGGCACAGCGAA
GAAGTCATTCGCTGACTGGCAGTGCCGCACGTCCGACCTTTCCTCTCCGT
GGCGGTCGGAGCCTGATCGAGCGAACCGTCGATGCGCGTCGGAGATTTCA
CTAACGATGAAGCTTGCTGCCCTCGTCGCCGTCGCCTCACCGATCACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig636:202606..204153+

>mRNA_F-serratus_M_contig636.17261.1 ID=mRNA_F-serratus_M_contig636.17261.1|Name=mRNA_F-serratus_M_contig636.17261.1|organism=Fucus serratus male|type=CDS|length=1644bp|location=Sequence derived from alignment at F-serratus_M_contig636:202606..204153+ (Fucus serratus male)
CTTCCATCATCTACGTTGGAATATTCAACCTCGGCTCCGGCTCCATCCTC
CTTCCCGTGCAAGCCCTTTGTAGCGGCCGACGTGCTGCCGTCTGCCCCCT
TTTTGCCGCTTGGGCGCCGCCGGCTTCGGACAGGGGTCTCCACCTGTAAC
AAAAGCGACTTGGCTGCCAGAAGGAGATCCCCGTGCGCGGTCCCCGATGC
CGCTAGAGCTTTTCCAGACGCCACCGACGCTGGAGGTATCTGGGGAGTAA
GGACGGCTACGTACGTGTGGCGGAGGGACGCTCGAAGAGAAGAGGCGATT
GGCGCGCCTTTGTCTCGATTCGTCACACCACGGCAACCACCGCCTGGCCG
GGGTTTTTCTCCTGTTACTTCGCCTGTTACGGACGACGGCCGCCGAAAAG
CGAGCTCCGCGGTGTCGCCGCCAATCCGCGAACGCTGGAGCGAAAGTGGA
AAATCAACTCGGTACCTGCCGCGGTTCCAAGGGCTCGAAGAATCGGGGAG
CAAGTCAACCGCCGACGGCGGCGTCGCGGGGAGGCCGAGCCTTGAACGCT
CCCTCACGCTCACAAGGCCAGCGTCTTCACTCTGGTGGCCACCACTGCCG
GCTCTACCCGCAGCCAACCCCGGGCGCACGGCACAGCTTGACTTCTCTTC
GGCGTCACGAACTCCAATTAAGCCCCCTAGGTTTCTATCTTCTTCGTTGG
CCGAGCCAGGCGGCCCGCGTGCCAACATTGACATCGGCGGCGAAGGTTCG
AGCAGACCCGAGGTTCGGCGGCACCGGAGCTGGCGAGGGCATGAGATTTT
TCCCTCGACGCCAAACGCGTAGCTTCCATCATCTACGTTGGAATATTCAA
CCTCGGCTCCGGCTCCATCCTCCTTCCCGTGCAAGCCCTTTGTAGCGGCC
GACGTGCTGCCGTCTGCCCCCTTTTTGCCGCTTGGGCGCCGCCGGCTTCG
GACAGGGGTCTCCACCTGTAACAAAAGCGACTTGGCTGCCAGAAGGAGAT
CCCCGTGCGCGGTCCCCGATGCCGCTAGAGCTTTTCCAGACGCCACCGAC
GCTGGAGGTATCTGGGGAGTAAGGACGGCTACGTACGTGTGGCGGAGGGA
CGCTCGAAGAGAAGAGGCGATTGGCGCGCCTTTGTCTCGATTCGTCACAC
CACGGCAACCACCGCCTGGCCGGGGTTTTTCTCCTGTTACTTCGCCTGTT
ACGGACGACGGCCGCCGAAAAGCGAGCTCCGCGGTGTCGCCGCCAATCCG
CGAACGCTGGAGCGAAAGTGGAAAATCAACTCGGTACCTGCCGCGGTTCC
AAGGGCTCGAAGAATCGGGGAGCAAGTCAACCGCCGACGGCGGCGTCGCG
GGGAGGCCGAGCCTTGAACGCTCCCTCACGCTCACAAGGCCAGCGTCTTC
ACTCTGGTGGCCACCACTGCCGGCTCTACCCGCAGCCAACCCCGGGCGCA
CGGCACAGCTTGACTTCTCTTCGGCGTCACGAACTCCAATTAAGCCCCCT
AGGTTTCTATCTTCTTCGTTGGCCGAGCCAGGCGGCCCGCGTGCCAACAT
TGACATCGGCGGCGAAGGTTCGAGCAGACCCGAGGTTCGGCGGCACCGGA
GCTGGCGAGGGCATGAGATTTTTCCCTCGACGCCAAACGCGTAG
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