mRNA_F-serratus_M_contig634.17246.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig634.17246.1
Unique NamemRNA_F-serratus_M_contig634.17246.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig634.17246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig634contigF-serratus_M_contig634:393401..393743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size323
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig634.17246.1prot_F-serratus_M_contig634.17246.1Fucus serratus malepolypeptideF-serratus_M_contig634 393420..393743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931960.6754405-UTR-F-serratus_M_contig634:393400..3934191622931960.6754405-UTR-F-serratus_M_contig634:393400..393419Fucus serratus maleUTRF-serratus_M_contig634 393401..393419 +
1690964077.373303-UTR-F-serratus_M_contig634:393400..3934191690964077.373303-UTR-F-serratus_M_contig634:393400..393419Fucus serratus maleUTRF-serratus_M_contig634 393401..393419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931960.6987188-CDS-F-serratus_M_contig634:393419..3934521622931960.6987188-CDS-F-serratus_M_contig634:393419..393452Fucus serratus maleCDSF-serratus_M_contig634 393420..393452 +
1690964077.383043-CDS-F-serratus_M_contig634:393419..3934521690964077.383043-CDS-F-serratus_M_contig634:393419..393452Fucus serratus maleCDSF-serratus_M_contig634 393420..393452 +
1622931960.7155042-CDS-F-serratus_M_contig634:393473..3937431622931960.7155042-CDS-F-serratus_M_contig634:393473..393743Fucus serratus maleCDSF-serratus_M_contig634 393474..393743 +
1690964077.3915477-CDS-F-serratus_M_contig634:393473..3937431690964077.3915477-CDS-F-serratus_M_contig634:393473..393743Fucus serratus maleCDSF-serratus_M_contig634 393474..393743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig634.17246.1

>prot_F-serratus_M_contig634.17246.1 ID=prot_F-serratus_M_contig634.17246.1|Name=mRNA_F-serratus_M_contig634.17246.1|organism=Fucus serratus male|type=polypeptide|length=101bp
MWSRRKKMHRDKGIPPPPLPALRSGPFHDAHCAPRNKIKWIWYDTFNIMW
CVLGTRTLAVHGTTSTPQKCVGSICERWKLAIRMRFGQDLHRVVGARARE
V
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mRNA from alignment at F-serratus_M_contig634:393401..393743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig634.17246.1 ID=mRNA_F-serratus_M_contig634.17246.1|Name=mRNA_F-serratus_M_contig634.17246.1|organism=Fucus serratus male|type=mRNA|length=343bp|location=Sequence derived from alignment at F-serratus_M_contig634:393401..393743+ (Fucus serratus male)
CGCCCGCCATCCACTACCTATGTGGAGCCGAAGAAAAAAGATGCACAGAG
ACGTTGAAAATACTGGTAATTAGAAAGGCATACCTCCACCACCTCTACCG
GCGCTTCGGTCAGGACCTTTCCATGATGCTCACTGTGCACCACGCAACAA
AATAAAGTGGATCTGGTATGATACTTTTAATATCATGTGGTGTGTACTTG
GAACAAGGACGTTGGCTGTACACGGTACGACGTCAACTCCACAAAAATGC
GTTGGATCGATCTGTGAGAGATGGAAGCTTGCGATAAGAATGAGGTTCGG
TCAAGATTTACACCGCGTCGTGGGTGCTCGTGCCCGGGAAGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig634:393401..393743+

>mRNA_F-serratus_M_contig634.17246.1 ID=mRNA_F-serratus_M_contig634.17246.1|Name=mRNA_F-serratus_M_contig634.17246.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig634:393401..393743+ (Fucus serratus male)
ATGTGGAGCCGAAGAAAAAAGATGCACAGAGACATGTGGAGCCGAAGAAA
AAAGATGCACAGAGACAAAGGCATACCTCCACCACCTCTACCGGCGCTTC
GGTCAGGACCTTTCCATGATGCTCACTGTGCACCACGCAACAAAATAAAG
TGGATCTGGTATGATACTTTTAATATCATGTGGTGTGTACTTGGAACAAG
GACGTTGGCTGTACACGGTACGACGTCAACTCCACAAAAATGCGTTGGAT
CGATCTGTGAGAGATGGAAGCTTGCGATAAGAATGAGGTTCGGTCAAGAT
TTACACCGCGTCGTGGGTGCTCGTGCCCGGGAAGTCAAAGGCATACCTCC
ACCACCTCTACCGGCGCTTCGGTCAGGACCTTTCCATGATGCTCACTGTG
CACCACGCAACAAAATAAAGTGGATCTGGTATGATACTTTTAATATCATG
TGGTGTGTACTTGGAACAAGGACGTTGGCTGTACACGGTACGACGTCAAC
TCCACAAAAATGCGTTGGATCGATCTGTGAGAGATGGAAGCTTGCGATAA
GAATGAGGTTCGGTCAAGATTTACACCGCGTCGTGGGTGCTCGTGCCCGG
GAAGTC
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