mRNA_F-serratus_M_contig634.17238.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig634.17238.1
Unique NamemRNA_F-serratus_M_contig634.17238.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig634.17238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig634contigF-serratus_M_contig634:144051..144689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size639
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig634.17238.1prot_F-serratus_M_contig634.17238.1Fucus serratus malepolypeptideF-serratus_M_contig634 144328..144678 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931960.7512698-UTR-F-serratus_M_contig634:144050..1443271622931960.7512698-UTR-F-serratus_M_contig634:144050..144327Fucus serratus maleUTRF-serratus_M_contig634 144051..144327 +
1690964077.401014-UTR-F-serratus_M_contig634:144050..1443271690964077.401014-UTR-F-serratus_M_contig634:144050..144327Fucus serratus maleUTRF-serratus_M_contig634 144051..144327 +
1622931960.78031-UTR-F-serratus_M_contig634:144678..1446891622931960.78031-UTR-F-serratus_M_contig634:144678..144689Fucus serratus maleUTRF-serratus_M_contig634 144679..144689 +
1690964077.419156-UTR-F-serratus_M_contig634:144678..1446891690964077.419156-UTR-F-serratus_M_contig634:144678..144689Fucus serratus maleUTRF-serratus_M_contig634 144679..144689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931960.7673159-CDS-F-serratus_M_contig634:144327..1446781622931960.7673159-CDS-F-serratus_M_contig634:144327..144678Fucus serratus maleCDSF-serratus_M_contig634 144328..144678 +
1690964077.4106345-CDS-F-serratus_M_contig634:144327..1446781690964077.4106345-CDS-F-serratus_M_contig634:144327..144678Fucus serratus maleCDSF-serratus_M_contig634 144328..144678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig634.17238.1

>prot_F-serratus_M_contig634.17238.1 ID=prot_F-serratus_M_contig634.17238.1|Name=mRNA_F-serratus_M_contig634.17238.1|organism=Fucus serratus male|type=polypeptide|length=117bp
MVHIFVLVCTSTYFRHRISSIDAFAARILEPPVAEVDDVDTVSHLLLVAL
PHAQDLVPEACKLCGRALAELPSLLHCCRSVEASIFVFRSDYYGALSPEH
FQKLASQTQNEKCFNR*
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mRNA from alignment at F-serratus_M_contig634:144051..144689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig634.17238.1 ID=mRNA_F-serratus_M_contig634.17238.1|Name=mRNA_F-serratus_M_contig634.17238.1|organism=Fucus serratus male|type=mRNA|length=639bp|location=Sequence derived from alignment at F-serratus_M_contig634:144051..144689+ (Fucus serratus male)
AACAACAAAGTAATATAATATTAATTAATAGTCAGTACTGGTACAGTACC
GCGTTTAACCAGCAGCGTGTAGACTATTAATAGACAAAGACGGGCGAATC
CAAATACTATTAATACAAACAGTACTGGTAAATCTTACTGTTAATACGTA
CCCAGTCCGACAACGATTATAACCTCGATTGGTAAAACAATAAATATAAC
CTCGATTCAAGTACAGCCGAAATTAGAATGAAAATGATTTTTTTGGTACA
AACGATTTTTTTATACTTGGTACCAGTATGGTACATATTTTTGTACTGGT
ATGTACCAGTACATATTTCAGACATAGGATCTCGAGTATCGATGCCTTTG
CGGCCAGAATTCTGGAACCGCCTGTTGCGGAGGTCGATGATGTCGACACC
GTCAGCCATCTGCTGCTTGTAGCGCTTCCACACGCGCAGGATTTGGTACC
GGAAGCCTGCAAACTCTGTGGCCGGGCACTTGCCGAGTTGCCATCTTTGC
TGCATTGCTGCCGCTCAGTAGAGGCATCGATTTTTGTTTTTCGTTCAGAT
TATTACGGGGCACTATCTCCCGAGCACTTCCAGAAACTGGCATCTCAAAC
ACAAAATGAGAAGTGCTTCAACCGGTGATCGCCGCGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig634:144051..144689+

>mRNA_F-serratus_M_contig634.17238.1 ID=mRNA_F-serratus_M_contig634.17238.1|Name=mRNA_F-serratus_M_contig634.17238.1|organism=Fucus serratus male|type=CDS|length=702bp|location=Sequence derived from alignment at F-serratus_M_contig634:144051..144689+ (Fucus serratus male)
ATGGTACATATTTTTGTACTGGTATGTACCAGTACATATTTCAGACATAG
GATCTCGAGTATCGATGCCTTTGCGGCCAGAATTCTGGAACCGCCTGTTG
CGGAGGTCGATGATGTCGACACCGTCAGCCATCTGCTGCTTGTAGCGCTT
CCACACGCGCAGGATTTGGTACCGGAAGCCTGCAAACTCTGTGGCCGGGC
ACTTGCCGAGTTGCCATCTTTGCTGCATTGCTGCCGCTCAGTAGAGGCAT
CGATTTTTGTTTTTCGTTCAGATTATTACGGGGCACTATCTCCCGAGCAC
TTCCAGAAACTGGCATCTCAAACACAAAATGAGAAGTGCTTCAACCGGTG
AATGGTACATATTTTTGTACTGGTATGTACCAGTACATATTTCAGACATA
GGATCTCGAGTATCGATGCCTTTGCGGCCAGAATTCTGGAACCGCCTGTT
GCGGAGGTCGATGATGTCGACACCGTCAGCCATCTGCTGCTTGTAGCGCT
TCCACACGCGCAGGATTTGGTACCGGAAGCCTGCAAACTCTGTGGCCGGG
CACTTGCCGAGTTGCCATCTTTGCTGCATTGCTGCCGCTCAGTAGAGGCA
TCGATTTTTGTTTTTCGTTCAGATTATTACGGGGCACTATCTCCCGAGCA
CTTCCAGAAACTGGCATCTCAAACACAAAATGAGAAGTGCTTCAACCGGT
GA
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