mRNA_F-serratus_M_contig6339.17230.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6339.17230.1
Unique NamemRNA_F-serratus_M_contig6339.17230.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig6339.17230.1 vs. uniprot
Match: D7FTH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 6.760e-87
Identity = 239/600 (39.83%), Postives = 286/600 (47.67%), Query Frame = 1 
Query:    1 GAYFDASTATLRDCLFETNRAEGRDLFGQLASFGGGLATRGPSMATTIRQAKLSRRQGG--GRGGGLWVE-GATAMLNGSTRFLNNSAASSYTNRGRGRGGRV-----LLFSGHHIRRMRVRGERGRFRGRWESQPACLSGEGARFTRPDLGFSLEGVILRRNRCETGLWTLGVPAAP*A**VGGVP*RRR*GLTRRSTTACS---------------------------KATG*RSPSSSVYSGAGQGGAVAIRFSFPIFTNCNFTGNSADGGDGMAPATGGAIMLFLSRVVNARSGGG-----------NPPPTTPTFRSCTFEGNRAG----PIEDLKRSSGGDRGHGIGGALAAIASSPVMVGCSFRNNSAVAAMPSRQGNGHAPV-----SIASPSFGGAIVFTSDCSGSRLSGCTLEGNTAINGVGGDLAVLAAPSGSRHHAASLRGLVGDPYPGLPLYVDPKA---------------------------FSVSDSPSAAGVM-------LDDLATPFSPRPPDSNAGSNSTVVLSDCRFRPPPPQTEPSPPPWADDRSETQASPFLFVLDGGTVELISPLFEAPGQVFVAQV 1533
            GAY D S AT+  C FE N AEG DLFGQLASFG GLAT GP+    +  +       G  G GGG+WVE GA A+L   T+F+NN+AASSYT++G G G  V     L  S   +    V G          S P+CLSG+G          +L GV LRRNRCETG    G          GG        LT R   A +                           +A G  + +++VYSGAGQGGA AIRF+FP FT CNFTGN+A+G                                       PPPT   F +C F  N AG    P +      G  +GHGIGGALAAIASSP++ GCSF NNSAVA  PS              S  +PSFGGAI+ TSDC G+RLS C L  N  +NGVGGDL VLAAPS  R              P   +  +P +                            + S +P+    +                 R     A + +T VLS C FRP  PQ++P+ P WAD RSET ASPFLFVLDGGTVEL+SP+FEAPGQ FVAQV
Sbjct:  406 GAYLDDSDATVSGCRFENNVAEGIDLFGQLASFGAGLATGGPTQVLDMSDSSFVANAAGKGGSGGGIWVEDGAKAVL-ARTKFVNNTAASSYTHKGAGGGVAVSASASLTMSEGCVLEGNVAGPEDV----GASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCS--------GGAV-----SLTGRGPQATAAVAXXXXXXXXXXXXXXAFDDCLFEGNEARG--AATNNVYSGAGQGGAAAIRFAFPRFTGCNFTGNAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETPPPT---FVNCKFTSNIAGSGGVPTDGNALGRGFRQGHGIGGALAAIASSPLLSGCSFWNNSAVAVFPSXXXXXXXXXXXXXXSGGTPSFGGAIMLTSDCWGTRLSDCALGDNPPVNGVGGDLPVLAAPSKGRSSMLDSIAAATAATPRTAVAPEPSSSAGXXXXXXXXXXXXXXXXXXXXXXXXXAPSQAPATPAAVHXXXXXXXXXXXXXXXSRKLPPGAAATATAVLSGCSFRPARPQSDPAVP-WADGRSETAASPFLFVLDGGTVELVSPVFEAPGQAFVAQV 981
[Close]
BLAST of mRNA_F-serratus_M_contig6339.17230.1 vs. uniprot
Match: A0A6H5K5Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q8_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 1.960e-60
Identity = 185/458 (40.39%), Postives = 218/458 (47.60%), Query Frame = 1 
Query:  376 SQPACLSGEGARFTRPDLGFSLEGVILRRNRCETGLWTLGV-----------PAAP*A**VGGVP*RRR*GLTRRSTTAC----SKATG*RSPSSSVYSGAGQGGAVAIRFSFPIFTNCNFTGNSADGGDGMAPATGGAIMLFLSRVVNARSGGG---------------NPPPTTPTFRSCTFEGNRAGPIEDLKRSSGGDRGHGIGGALAAIASSPVMVGCSFRNNSAVAAMPSRQGNGHAPVSIA----SPSFGGAIVFTSDCSGSRLSGCTLEGNTAINGVGGDLAVLAAPSGSRHHAASLRGLVGDPYPGLPLYVDPKAFSVSDS------------------------PSAAGVM------LDDLATPFSP--------RPPDSNAGSNSTVVLSDCRFRPPPPQTEPSPPPWADDRSETQASPFLFVLDGGTVELISPLFEAPGQVFVAQV 1533
            S P+CLSG+G          SL GV +RRNRCETG    G            P A  A  V G            +   C    ++A G  + +++VYSGAGQGGA AIRF+FP FT CNFTGN A+G                                           PPPT   F S  F          + RS  G  GHGIGGALAAIASSP++ GCSF NNSAVA  PS         S A    +PSFGGAI+ TSDC G+RLS C L  N A+NGVGGDLAVLAAPS  R    +         P   +  +P + + S S                        PS A  +        + A  F P        R     A + +T VLS C FRP  PQ++P+ P WAD RSET ASPFLFVLDGGTVEL+SP+FEA GQ FVAQV
Sbjct:   20 SDPSCLSGQGGGIHVSGSAISLSGVSMRRNRCETGALDAGCSGGAVSLTGRGPQATTA--VAGXXXXXXXXXXXATFDDCLFERNEARG--AATNNVYSGAGQGGAAAIRFAFPRFTGCNFTGNVAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETPPPT---FVSVGFSRRAV-----VGRS--GIPGHGIGGALAAIASSPLLSGCSFWNNSAVAVFPSXXXXXXXXXSPAVSGGTPSFGGAIMLTSDCWGTRLSDCALGNNAAVNGVGGDLAVLAAPSKGRSSMLNSITAATVASPRTAIGPEPSSSAGSASXXXXXXXXXXXXXXXXXXAGAPPAPSRAPAIPAAVHGATNTAAAFQPVSSPLASSRQLPPGAAATATAVLSGCSFRPARPQSDPAVP-WADGRSETAASPFLFVLDGGTVELVSPVFEAAGQAFVAQV 462
[Close]
BLAST of mRNA_F-serratus_M_contig6339.17230.1 vs. uniprot
Match: D8LFL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL5_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 4.160e-53
Identity = 154/381 (40.42%), Postives = 183/381 (48.03%), Query Frame = 1 
Query:    1 GAYFDASTATLRDCLFETNRAEGRDLFGQLASFGGGLATRGPSMATTIRQAKLSRRQGG--GRGGGLWVE-GATAMLNGSTRFLNNSAASSYTNRGRGRGGRV-----LLFSGHHIRRMRVRGERGRFRGRWESQPACLSGEGARFTRPDLGFSLEGVILRRNRCETGLWTLGVPAAP*A**VGGVP*RRR*GLTRRSTTACS---------------------------KATG*RSPSSSVYSGAGQGGAVAIRFSFPIFTNCNFTGNSADGGDGMAPATGGAIMLFLSRVVNARSGGG-----------NPPPTTPTFRSCTFEGNRAG----PIEDLKRSSGGDRGHGIGGALAAIASSPVMVGCSFRNNSAVAAMPS 993
            GAY D S AT+  C FE N AEG DLFGQLASFG GLATRGP+    +  +       G  G GGG+WVE GA A+L   T+F+NN+AASSYT++G G G  V     L  S   +    V G          S P+CLSG+G          +L GV LRRNRCETG    G          GG        LT R   A +                           +A G  + +++VYSGAGQGGA AIRF+FP FT CNFTGN+A+G                                       PPPT   F +C F  N AG    P +      G  +GHGIGGALAAIASSP++ GCSF NNSAVA  PS
Sbjct:   11 GAYLDDSDATVSGCRFENNVAEGIDLFGQLASFGAGLATRGPTHVLDMSDSSFVANAAGKGGSGGGIWVEDGAKAVL-ARTKFVNNTAASSYTHKGAGGGVAVSASASLTMSEGCVLEGNVAGPEDV----GASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCS--------GGAV-----SLTGRGPQATAAVAXXXXXXXXXXXXXXAFDDCLFEGNEARG--AATNNVYSGAGQGGAAAIRFAFPRFTGCNFTGNAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETPPPT---FVNCKFTSNIAGSGGVPTDGNALGRGFRQGHGIGGALAAIASSPLLSGCSFWNNSAVAVFPS 368
[Close]
BLAST of mRNA_F-serratus_M_contig6339.17230.1 vs. uniprot
Match: D8LFL7_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL7_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 3.720e-26
Identity = 81/194 (41.75%), Postives = 98/194 (50.52%), Query Frame = 1 
Query: 1054 VFTSDCSGSRLSGCTLEGNTAINGVGGDLAVLAAPSGSRHHAASLRGLVGDPYPGLPLYVDPKAFSV---------------------------SDSPSAAGVM-------LDDLATPFSPRPPDSNAGSNSTVVLSDCRFRPPPPQTEPSPPPWADDRSETQASPFLFVLDGGTVELISPLFEAPGQVFVAQV 1533
            + TSDC G+RLS C L  N A+NGVGGDLAVLAAPS  R              P   +  +P + +                            S +P+    +               S R     A + +T VLS C FRP  PQ++P+ P WAD RSET ASPFLFVLDGGTVEL+SP+FEAPGQ FVAQV
Sbjct:    1 MLTSDCWGTRLSDCALGDNAAVNGVGGDLAVLAAPSKGRSSMLDSIAAATAATPRTAVAPEPSSSAXXXXXXXXXXXXXXXXXXXXXXXXXXAPSQAPATPAAVHXXXXXXXXXXXXXASSRKLPPGAAATATAVLSGCSFRPARPQSDPAVP-WADGRSETAASPFLFVLDGGTVELVSPVFEAPGQAFVAQV 193
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6339.17230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTH4_ECTSI6.760e-8739.83Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K5Q8_9PHAE1.960e-6040.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFL5_ECTSI4.160e-5340.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFL7_ECTSI3.720e-2641.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6339contigF-serratus_M_contig6339:19920..29651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog2880.D7FTH4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1533
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6339.17230.1prot_F-serratus_M_contig6339.17230.1Fucus serratus malepolypeptideF-serratus_M_contig6339 25435..29522 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931959.8299441-UTR-F-serratus_M_contig6339:19919..202861622931959.8299441-UTR-F-serratus_M_contig6339:19919..20286Fucus serratus maleUTRF-serratus_M_contig6339 19920..20286 -
1690964076.995391-UTR-F-serratus_M_contig6339:19919..202861690964076.995391-UTR-F-serratus_M_contig6339:19919..20286Fucus serratus maleUTRF-serratus_M_contig6339 19920..20286 -
1622931959.8522356-UTR-F-serratus_M_contig6339:20701..208671622931959.8522356-UTR-F-serratus_M_contig6339:20701..20867Fucus serratus maleUTRF-serratus_M_contig6339 20702..20867 -
1690964077.008695-UTR-F-serratus_M_contig6339:20701..208671690964077.008695-UTR-F-serratus_M_contig6339:20701..20867Fucus serratus maleUTRF-serratus_M_contig6339 20702..20867 -
1622931959.873847-UTR-F-serratus_M_contig6339:22247..224251622931959.873847-UTR-F-serratus_M_contig6339:22247..22425Fucus serratus maleUTRF-serratus_M_contig6339 22248..22425 -
1690964077.0198476-UTR-F-serratus_M_contig6339:22247..224251690964077.0198476-UTR-F-serratus_M_contig6339:22247..22425Fucus serratus maleUTRF-serratus_M_contig6339 22248..22425 -
1622931959.8899665-UTR-F-serratus_M_contig6339:23189..233721622931959.8899665-UTR-F-serratus_M_contig6339:23189..23372Fucus serratus maleUTRF-serratus_M_contig6339 23190..23372 -
1690964077.0314996-UTR-F-serratus_M_contig6339:23189..233721690964077.0314996-UTR-F-serratus_M_contig6339:23189..23372Fucus serratus maleUTRF-serratus_M_contig6339 23190..23372 -
1622931959.9360397-UTR-F-serratus_M_contig6339:24911..250051622931959.9360397-UTR-F-serratus_M_contig6339:24911..25005Fucus serratus maleUTRF-serratus_M_contig6339 24912..25005 -
1690964077.041579-UTR-F-serratus_M_contig6339:24911..250051690964077.041579-UTR-F-serratus_M_contig6339:24911..25005Fucus serratus maleUTRF-serratus_M_contig6339 24912..25005 -
1622931959.9727545-UTR-F-serratus_M_contig6339:25402..254341622931959.9727545-UTR-F-serratus_M_contig6339:25402..25434Fucus serratus maleUTRF-serratus_M_contig6339 25403..25434 -
1690964077.0527387-UTR-F-serratus_M_contig6339:25402..254341690964077.0527387-UTR-F-serratus_M_contig6339:25402..25434Fucus serratus maleUTRF-serratus_M_contig6339 25403..25434 -
1622931960.0724063-UTR-F-serratus_M_contig6339:29522..296511622931960.0724063-UTR-F-serratus_M_contig6339:29522..29651Fucus serratus maleUTRF-serratus_M_contig6339 29523..29651 -
1690964077.0965686-UTR-F-serratus_M_contig6339:29522..296511690964077.0965686-UTR-F-serratus_M_contig6339:29522..29651Fucus serratus maleUTRF-serratus_M_contig6339 29523..29651 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931959.9865663-CDS-F-serratus_M_contig6339:25434..255831622931959.9865663-CDS-F-serratus_M_contig6339:25434..25583Fucus serratus maleCDSF-serratus_M_contig6339 25435..25583 -
1690964077.0653698-CDS-F-serratus_M_contig6339:25434..255831690964077.0653698-CDS-F-serratus_M_contig6339:25434..25583Fucus serratus maleCDSF-serratus_M_contig6339 25435..25583 -
1622931960.0061686-CDS-F-serratus_M_contig6339:26218..263971622931960.0061686-CDS-F-serratus_M_contig6339:26218..26397Fucus serratus maleCDSF-serratus_M_contig6339 26219..26397 -
1690964077.076584-CDS-F-serratus_M_contig6339:26218..263971690964077.076584-CDS-F-serratus_M_contig6339:26218..26397Fucus serratus maleCDSF-serratus_M_contig6339 26219..26397 -
1622931960.0415385-CDS-F-serratus_M_contig6339:29466..295221622931960.0415385-CDS-F-serratus_M_contig6339:29466..29522Fucus serratus maleCDSF-serratus_M_contig6339 29467..29522 -
1690964077.0872645-CDS-F-serratus_M_contig6339:29466..295221690964077.0872645-CDS-F-serratus_M_contig6339:29466..29522Fucus serratus maleCDSF-serratus_M_contig6339 29467..29522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6339.17230.1

>prot_F-serratus_M_contig6339.17230.1 ID=prot_F-serratus_M_contig6339.17230.1|Name=mRNA_F-serratus_M_contig6339.17230.1|organism=Fucus serratus male|type=polypeptide|length=128bp
MATTIRQAKLSRRQGGGRGGGLWVEGATAMLNGSTRFLNNSAASSYTNRG
RGRGGRVLLFSGHHIRRMRVRGERGRFRGRWESQPACLSGEGARFTRPDL
GFSLEGVILRRNRCETGLWTLGVPAAP*
back to top

mRNA from alignment at F-serratus_M_contig6339:19920..29651-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6339.17230.1 ID=mRNA_F-serratus_M_contig6339.17230.1|Name=mRNA_F-serratus_M_contig6339.17230.1|organism=Fucus serratus male|type=mRNA|length=9732bp|location=Sequence derived from alignment at F-serratus_M_contig6339:19920..29651- (Fucus serratus male)
GGGGCGTATTTTGACGCTTCAACCGCCACGCTGCGCGACTGTCTATTCGA
GACTAATCGAGCCGAGGGACGCGATCTGTTTGGCCAGCTGGCGTCGTTCG
GAGGAGGCTTGGCCACTCGAGGACCTTCCATGGCGACAACCATCAGGCAA
GCTAAACTCAGCAGGAGGCAGGGCGGGGGGAGGGGGTTCCTTGTATCCCC
GGGGTTTCCCATGGAACGTTCAGCAGCAGCTGTCATACGTGTGTTGGCTA
TTCGACAACATTATCAAACATTTAATCATAGAAAGTACTTTTGTATGAAA
TTATAACGCGTGCTTCGAAGAACAGTTGGTACCTTAAGAGCTTTGTGCCA
TTTCTTCTCCTTCATACGTAGTAATAGTGTAATTGTGTAATAGTGTCGGT
GATCGAGTCTCTAACTAGAACTGCTGCTACAAACCTTACTTTAAATAACA
CACTGATGTAGATAGGATTCCCGGCATCAGAAAGGTCCATCTGGCCTGGC
ACTGGGCCGGATATTTTTGCGCATCCCATCCACAAAAACCCAAGGCCACG
CGGCGCGATATTTGGATCGAGTCAGAAACGAACAGGATAGTAATTGCAGC
ACATACATTTTTGGTGTTGTTTCCATAAAACTTTCAGCGAAGTGATTGCC
AACCCGAGCCATCGACTGATGCTATCGACTGATGCTATCGACTGATACTG
TCGACTGATACCGGGTACTTTCAACATACCCTTAATATCAATAGTGGGTG
TGGGAAAGAGAGGCGCATATTAATTGGTCCATGCAGACCTGCAAGCGCAG
CATTCGTTCGGAACTACCTGAGGTTATTGACCCTGCGCCGGCGGACTCTC
GGCAGTGAACTCCATCGGCACACAATTGCGCGACTGATAAACTCGGGAAT
GACCCGATGGCGCATGACGGTTTTGAATAAATAAATGGATGCCGCCGTGA
AACTCCGAGAAATCCCGTAAGTAACCCCAGATTCAGGCTGAGTATGGAGA
TGAGCAGGCTGACGCAGGCCAGGACTGCCGAACCCGTCTCGCGGGACCAA
ATTCTCAGGCACGAACGCGGACAGGGAATATTTCATTCCCCCGTTCAACT
GACCACGAGCTGGACTGGCGGCCTCACCCGGTTGATCCATACTCTATTAA
TAGGTACCTGGTACATGTTTGTCCATACAAGGAAGGGGGCTATCCTGCTT
GCTTGTGGTGTCCTTGCGGTGTCCTTCTGGTGTGTCCTGAAAACAGAAAA
ATTGGTAATATATAGTGTGCTGCACCTGGAAAACAGAGGCAGGAGCCGAA
TAACGCCTCCACACATCCCTACTGTTGATTGGTATTAATATATTAATATA
TTCTATGCGCCTGCACAACGGCGAGGCGGCAGATGGTCAGGAATGTGCTG
TAGTAGACTCAACATTCAAACGCCCGAGACTCTTCACGGCCGTTTAAACA
TTGAGGACGTCTGTTAGAGAGTATGAGAGCTCTAGTGCCAGTAGTACGGG
GATCATTCGATTAATCTACTGTGCGTATAGGTCCGAGCGACATCGCTTAG
AGGATGCGTCAAATCCCCAGCGCCCTAACAAGTCTCCGAACCCCCTCTAC
ATCTTTCTTCAAGTGGCGGGATCTCGCGGCGTCTCTCTCCTTTTCTCCCA
CGCGGCCGCTTCCCCCCTCCCCCCCCTCCCCCCCTCCTCCTTGCCCCCTT
TTGCGATCTCGCGCTACCCGGTTGATCTCCATCTAACACCGCCGTGGATC
TCCATCCCTACATTAATTTTCCGAACGCTCGAATGTCGCTTCTCCATGCT
ATCGGCCCTCCTTGCTTCTTCCATTTATACAGCACTTTGTGCTTAAGTTA
CTGCATCCTCTCCGAGCTTTAAGATTCTCGAATACGCGATTCCCTGGGTG
AAAGCTTCGATCCCTCGTGTTCGACGAGCGTCCCCGCCCACAAAAATATC
CTCGTTAGGAGAGAGACCTTCTCTTTTCTTTTCTATGTATGTATTTATGT
TCATGACTTCTTGTAGCAGAGTATGGACCAACCGGGTGAGGTTGCCAATT
CTGCCCGTGGTTACTTGAAAAGGTAAATTATTTCTTTTCTGTCCCCGTTT
GCGCCGGAGAAGCTGGTCTCGCGAGACAGGTTCAGCAGTCCCGTCCCGCG
TCAGCCTGCTCATCTCCATACTCAGGCTAAATATGGTGCTTACACGCGGG
ATTTTTCCCGCTTTCCGCGTCAGCGTCAATTTGTATCGTTAATGTATATA
CGGGTGTATCTACATAAAGAGATCCCGCCATCCGGGTCAGTTCTGGACTT
GACCGGGTCACGTTATTGCGTACCGATGACGTGCACTGCCGAAGAGTCCG
CCGGCGCAGGACCAATAGTCCCATCGGTGCAGTGGACACGTGCGATAGCA
GTTGGTTAGGCCAACCGCTATTGAGGCCACAAAAATGAACAAATTTCCGC
AGGTCATTTTTTGTGGGAAGCGCGCTATGAGAGAACAAAAAGCAGAATTG
GTCCAGAATATTTGTGGCCGCCTACGCAACTGTTCGCGCCTTTCGAAGCG
AAGCACTGTACAAAACCTACCTTTGAGGACGAGATGTACTAGGAGAACCA
AATAACAGCAACTACTGCCACGGCCGCCGTAGCAGCAGCCGCGGACGAGC
ACTACGATTGCATCTGACCTGTAAAACTACCTGTCCACCTGTGTGTGTGG
GCGGGATGGATGGTGAAAACATACCCGCTGAAAGAGATCGCGGCTGCGGT
GGCCGTCGAAGCAAGCGTGGATTGAGCACTGGTTTAGTGTATTCGGCATC
GCTGTGGTCTGAGTCTGGCTGATGGCGCTGTCAGTAGTTCTGATTGGGTG
ATGCTACCCTACCCGATGATGGCGTTGTTAGGTGTCTCGCCTCTCATTTC
CATATTTCAAATTGAATGTCCAGTATTCCCACGGGCCTCCGTCTTATTTA
TTATTATTATTATTCTCGTTTATTCGCTCAGCCCATGGCGAAACACACAC
ACAGAGGAGAAAAAAAATACAGAAATAATTGCCGCGGAAATCAACATTTT
TTTGTGTTTTATTTTTGTATTGGTGTGGTGCCATAGCGGTTGCCCTTAGT
GAGTACTTTGGAGTATGTACTAGTAGGAAAAAAAATGATACTTGTCAACG
CGAGGATCTCCTTCTTCTGTGCCTTCGGAACACGCGTCGCTGTTGTTTCT
CGCCGCGCAGCTATACGGGGTTCATCGGAAACTCCGTCAGACACGGTGGC
TCAGGGGCGGCCTGTGGGTCGAGGGCGCCACGGCGATGCTGAACGGCTCC
ACGCGGTTCCTGAACAACTCGGCGGCGTCGAGCTACACGAACAGGGGGCG
GGGGCGGGGTGGCCGTGTCCTCCTCTTCTCAGGTCATCATATCCGACGGA
TGCGTGTTAGAGGAGAACGTGGCCGGTTCCGAGGTATGGTGGCAGCGCCG
ATGAAAGATTTTCACGACGCGTTTTCGTTTTTTTCAGGGTTGGGGGCGCG
GGGGGTGCAAGAAAAACAGGGCTGTTCGTGTTTGTGCTGATCACAGTGGC
GTGCCGACGGCCTAGGGTTTCCACAATGCGTTTTCTTATGGGATTCAGGG
GGGGTTATTGGTATTTGTGCTCACGAAGATGCCGTGTCGACGCGTTGGAG
TCATTTTGCGGGGGCATCGTCAAGTCCCGTGTTGTTTTGGGGTGTTCCGG
GCGGATGCCGGGTTCGTTGTTTCTGCAAGAGTACGGTAGCTTCTCCAGCT
GAGATTCTTCCTAACGGTGTAGGGTAGCCGGGTTTTGTCACAAAAATTCC
TTGAAAGTTCCTCGGAAGGTTCCAAATAAGGTTTTCACAAAAGGTTCTGG
AATATTCCCACGGGGTCCCGTGTGGTGAAGTCGCAATGAACCAAGTTCTT
TCCTCCATGAAGGTGCTGCTGTAGAGTCCCTGCCGTCTGATTTGAGATAC
TGAGATACGTTTCCGCCGGCCAAACTGCAGCCATGGTTTCTCAAGGCGGT
AATTCGTCTCGTGCCTCACAGACTGCTACATGGCGGCCCTCCCGGACGAT
CCTATCCACACACTCCAGGACGTTGGGAAAGCCAGCCGGCGTGCTTATCG
GGGGAGGGGGCGCGGTTTACTCGTCCGGATCTGGGGTTTTCCCTTGAAGG
CGTTATTTTGAGGCGGAACCGGTGTGAAACAGGGCTCTGGACGCTGGGTG
TTCCGGCGGCGCCGTGAGCGTGATAGGTCGGGGGCGTCCCTTGAAGGAGG
TGGGTCTCCTGCTCCAACGGGTGAGGGTGAGGGGAACGTCATGCGGTGTG
ATGTGGATGGATGTTGCCTATTTATAAATTTTGCTCATGTCATTATCCCT
GCGCTCGCCTTGTGCGTCTCTGTTCCTACTCGCTCTACCGGCTAAGCCTC
AGTGCATCTAACTTAAGTCCACTACGCTATATAGAGTATATTATACTATT
CATGAACTAGACTAGTGCCCACTTTTGTTGTTTCTGTTGTTTCAACAAAT
CGTAGTACTGTATTTAATAATTGTTAACGGATAGGTATACCATGACAGAA
ACCAGTGCATGCACGTTTGTTTGTTTTGCGTTATTTTTTGTCTCGGCGTG
TTTTGCTTTCTTACGGTGTTTCAATGTTTCAATGGGAAAAAAAAAGGCGA
TGAGGGCTGACGCGACGTTCGACAACTGCTTGTTCGAAAGCAACAGGCTA
GAGGTCTCCTTCCAGCAGTGTCTACAGCGGAGCCGGTCAGGTAGGGCGTA
TAACCTTTAAAGTATTGATGTAGGAAAAGGAGGCGTGTTTTTACACACAA
CGGGAAAATAAAACCCCCCTCCCTCCCCCACAACTCATTCATTTTCTACC
GTCTTCAGAGTTTTTGCTTTCCGCATTTGACTTGAACTACCTTGAGGTTT
ATTGGCCTTGTACCGGCGGACTCTCGGTAGTAAACGCCATCAGTACGCGA
TTGCGTAACCCGATAATCTCGGGACTGACCCGATGGCTATGGAGATTTAA
ATAAATAAATGGACGTCGCCGCGGAACTCGGGAGGAAATCCCGTGAGTAT
GCACCAGATTCAGCCTGGGTATGGAGATGAGCAGGCTGACGCGGGACGGT
ACTGCCGAACCCGTCTCACGAGACAAATTCTGCGGCGCGAACGGGGACAG
GGAAATATTCATTTCCCTGTTCAGATGACCACGTGCAGAATTGGCAACCT
ACCTGGTTGATCCATACTCTTGCTATATGTGTGACCATACATATATATAT
AAGTAAATTTAGAGGATAGCTATGAGCTGGAGTGCTAATTTTGGGACTGC
TAGTATTTGTACGGTAAAATCTTTGCTCGAAGTACCTATAAATATTAACG
TAGCACTATAGATTATAACATAGTAATACATAAGTAGTATACATGATATA
TACCGTAATACATAATACGAGTTGCGACTGCCTGGAATTGAAATGACTTT
ATTTTTATTTTTTTGTGAGAATTAGGAATAGGTCTGAACATGAATATTAT
GATGAAATATTAATAGTCTACTACTGTATTTTAGTGTATCATGAAATATG
TTTCTTGCTTTTTCAACTTTATTTATTTTTTTGTGAAGATTAGGAATTGG
TCTGAACATGAACATGAACATTATGATAAAATAGTCTAATATCAATACTG
TATTAGTGTATCATAAAAAATGTGCCTTCCTTTTTTCAATTTTTTGTTTT
GTTTTGTGTGAAGATTAGGAATAGGTCTGAGCATGAACTTTATGATGAAA
TAGTCTACTACTGTATTTTAGTGCACCATGAAATATGTTTTTTTTTGCTT
TTTTTCGCACGTTAACCCGTGAACCTTTACCATTTACTACCAGTACAGTA
TTCAGTTGTGTACATGCTAAGGCAGTATTCGTTCGGAACTACCTTGAGGT
TTACTGGCCCTGCGCCGGCGGACTCGCAACTGCGTGACCCGATAAACTCG
GGACTGACCCGATGGCGTATGGCGGTTTCATAAATGGACGCCGCGGCGGA
ACTCGGGAGGAATCCGTAAAGTAAGCACCATATTCAGCCTGAGTATGGAG
ATGAGCAGGCTGACGCGGGACGGGACAGGTGAACCTGTCTCGCGAGACCA
AATTGTTAGGCACGCACGGGGACAGGGGAATATTAATTATCCCTGTTCAG
CTGACCACGAGCAGGATTGGCAACCTTACACGGTTGATCTATACTCTACT
ATATGTGATGACCATACATACATGAATGCATATGGCTGAATCAACGTGGT
ATGGATGCATATGAATCAACTTGGAGCAGGGTGGCGCGGTGGCTATCCGC
TTCTCTTTCCCCATCTTCACCAATTGCAACTTCACCGGAAACTCGGCGGA
CGGCGGGGATGGCATGGCCCCCGCCACGGGTGGAGCGATCATGCTGTTTC
TCTCCCGAGTTGTTAACGCTCGGAGTGGAGGTGGAAACCCGCCCCCGACA
ACGCCTACATTCGTGAGTGTCTCTCTCTCTTTTCTCTCTTTCATATGCAC
CTTCAGTCTTCGGTACTTGATACAGTAGACTATATATACAGTATTGTCTC
GTTTCCTGAGCTTCCACGTTTTAACTGTAACATTAATAATACAACATTGC
AGTAGAACCTATACTAGTATTAATATGACGAGAGACCGTTCTTGATTGAT
TGTGGGGTTTCTATTACAGCGTGGCGTGACGGGACTGTCTTATATACCGT
ATATTTGATCATTTTCAGAGAGTACTATACTATACTATAATATACTATCC
TATACTTTAGGGACCTCTTACCCCCCCCCCCCCTTTTTTTCTCCTTCACT
CCAAACAAGTGGGCTCAGCTGCGATATTCATAACGAGTGTAAATAAAATA
CTTGTATTAATAGTGCACGTAGGGTAGGATTGTGGGTGCATGGTGTATAG
TTGTGGAGAGTGGCTTGTACTTGAAGCTGATCTTTGATCCTTATTAATAG
TTTTTTCCTACTCACCAGACTCAGCCTAACTGTAACCCAAGTGTGGGGAA
TGGGCGGGCTGACGCGGGACGGGACAGCCGAACTCGTCTCGCAAGACCAA
ATTCTCAGGCGCGAACGGGAACGGGGGAAAACGAAAATCCTGTTCAGCCG
ACCTCGAACAGGATTGGCAACCTTACCCGGTTGATGATCCATACTATGCT
GAAAGTGCTGACCATACATACATACATAAATACATATATTCATTCTTTTG
ACTGCTTCGCTCCCCCCTGCGAACAGAGGAGTTGCACGTTCGAAGGAAAC
CGCGCCGGTCCTATAGAAGATCTGAAGAGGAGCAGCGGAGGGGACCGGGG
ACACGGAATCGGGGGCGCCCTCGCGGCGATCGCGTCCTCTCCTGTGATGG
TCGGCTGCTCGTTCCGAAACAACTCCGCCGTAGCGGCAATGCCGTCTCGA
CAAGGTTAAATATATACACACATATATATATATATATATAATATATACAA
TACGCATAGATATATGGATATATGATAGATATTTACTCGTATGATGGACC
CGTATTGTATCAATACGATTTCATTGTATACAAAATCTATATTAATAGCT
CTACACACGTGACATCGCTTTACTAATGATACGATGATGCGCTGTACACA
TGACAAACTAGAATTTAATAGTTTGTATGCGGTATGTAGTGTGAGTATAT
AACTAATTTATGTACTGAGGATAGTTGGATAGTGTGATGCTCTACGTGCT
ATCTTAATCATATGCCTGGTACCATATACGTAACAGCCCGCGTTAAATCA
CCAGCCCTGGTGCATTTCTAAAATGTACCAGCGAGAGAACGCCTCCAGAT
CTACACATAACCCTAACCCAGACCCAGCTCCTAACGCTATCGCTAACCCT
AACCCAGACCCCCCTAGCCCAGCTGACTGCGAGCCCAATTCACCTAGCTG
ACTGCGAGGTCCCAATTCTGACTGCGAGGTCCCAATTCATGGCTGGGTTC
ATTCATGCCCCGTCTGCGAAAAATAAAAAATCCTAACGCTATCGCTAACC
CTAACCCAGACCCCGCTAGCCCAGCTGACTGCGAGGTCCCAATTCATGGC
TGGCGCTTGGTTCAAGTAAGATAAAAAAATGGTTCGACGCTGGGGATTGA
ACCTCGAGAGTTTTTCGATGACTGTAATCTTACCAACTAGCCTATTACGC
TGTGACTGAGAATCTTGGCATTTTATTCCTTATAAATTACAAAATAAGGT
GTAGTTTTGGAGGCAAATCGGTTCTGTAAGGTGTAGTTCTGGTGTAGTTC
TGGAGGCGTTCTCTCGCTGGTACATTTTAGAAATGCACCAGGGCTGGTGA
TTTAACGCGGGCTGATATACGTAACGGTCTACCAGTATATGTTTTTGTGT
TGATATTATGGTCGCACTTTGTATCAATTACACCAAGTGCCGGAAGCACA
CATGCATAGCTCTGTTAGAGCGAAGTAGGTCGTTCCTTTGAAGGTTGGTT
GACTGTTGTTATTAATAGCTCTTTATGTTAGTCAGGCTAGATTTGAGCTA
AAAGAAGGGGTTTCGTATAGATAAATAGTTCTACTTCATGTGACACCGTT
GCTTGTCGTTTGATCCTCTTACCGGTACATTGTCGCTTGACCGTTCAAAG
ATATCCTTCCTTACTTCCTTGTGGTTGTGTTTTTAGTTCTTAGCTATGTT
TTTTAAGTGTTTTTTCGTTTTGTTAGTATGATGTGTTTTTTTTGGTCTTT
TGTGTCTTTTTTATATGTTTGCATTTTTTGCCGTGACGAATTTTGAGGGG
GGTTTTTTGTCGTGTTTTTTTTCCCCACTATCAGGAAATGGTCACGCTCC
GGTTTCTATCGCCAGTCCGTCTTTCGGTGGGGCGATCGTCTTTACCAGCG
ACTGCTCGGGATCTCGGCTGAGCGGCTGCACTCTGGAGGGCAACACGGCT
ATTAACGGCGTCGGGGGTGATCTAGCCGTGCTTGCGGCACCTTCGGGCAG
GTGATGTGGCCTGGCCTCTCCTTGATTGGTACATTTTTATTCTGTATATA
TTGCTCATAAAATTTGGTCTTAGCATAAAAAAACATTTCCTTCCCCTCTG
TTTTGTTCTCGTTTCTGTTTCTTTTTCTTTTTTAAGGAGTTGGAGTGAAG
AAGAGATTGGAAAAAGGAAAAAGTAAGGCTCGCTTTTTTTTACATTTACA
TGCTTTACGAAGTATCTCTATGGGTCCACTCATGAATACAGTAATCTATA
GATTGACTTGTCCTTAAACGGGACGTTCGACCGGCGAATTCATGACGCAT
TTTTCTTGATCTGTTGTCCCCCCTCCCCTCCCTTCCTCGCCGGCGCCCCT
CCTCGGAAATCCCTCCTTTTATTGAAACCCGTCCAAACCCACGTTACATC
CTCCATAAACAACAGCCGCCATCACGCCGCGTCACTGCGCGGCCTCGTTG
GAGATCCCTACCCTGGCCTTCCCCTCTACGTAGATCCCAAGGCCTTCTCC
GTCTCCGACTCCCCGTCCGCCGCCGGCGTGATGCTGGATGACCTCGCCAC
CCCCTTCTCGCCGAGGCCACCCGACTCGAACGCCGGCAGCAATTCCACGG
TGGTCCTGTCGGACTGCAGGTTTCGACCGCCTCCTCCCCAGACGGAACCT
TCCCCTCCGCCGTGGGCCGACGATCGCTCGGAGACGCAAGCCTCGCCTTT
TCTTTTCGTGCTCGATGGGGGGACGGTGGAGCTCATATCCCCGTTATTTG
AGGCTCCCGGGCAGGTGTTTGTGGCTCAGGTG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6339:19920..29651-

>mRNA_F-serratus_M_contig6339.17230.1 ID=mRNA_F-serratus_M_contig6339.17230.1|Name=mRNA_F-serratus_M_contig6339.17230.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig6339:19920..29651- (Fucus serratus male)
ATGGCGACAACCATCAGGCAAGCTAAACTCAGCAGGAGGCAGGGCGGGGG
GAGGGGATGGCGACAACCATCAGGCAAGCTAAACTCAGCAGGAGGCAGGG
CGGGGGGAGGGGGGGCGGCCTGTGGGTCGAGGGCGCCACGGCGATGCTGA
ACGGCTCCACGCGGTTCCTGAACAACTCGGCGGCGTCGAGCTACACGAAC
AGGGGGCGGGGGCGGGGTGGCCGTGTCCTCCTCTTCTCAGGTCATCATAT
CCGACGGATGCGTGTTAGAGGAGAACGTGGCCGGTTCCGAGGGGCGGCCT
GTGGGTCGAGGGCGCCACGGCGATGCTGAACGGCTCCACGCGGTTCCTGA
ACAACTCGGCGGCGTCGAGCTACACGAACAGGGGGCGGGGGCGGGGTGGC
CGTGTCCTCCTCTTCTCAGGTCATCATATCCGACGGATGCGTGTTAGAGG
AGAACGTGGCCGGTTCCGAGGACGTTGGGAAAGCCAGCCGGCGTGCTTAT
CGGGGGAGGGGGCGCGGTTTACTCGTCCGGATCTGGGGTTTTCCCTTGAA
GGCGTTATTTTGAGGCGGAACCGGTGTGAAACAGGGCTCTGGACGCTGGG
TGTTCCGGCGGCGCCGTGAGACGTTGGGAAAGCCAGCCGGCGTGCTTATC
GGGGGAGGGGGCGCGGTTTACTCGTCCGGATCTGGGGTTTTCCCTTGAAG
GCGTTATTTTGAGGCGGAACCGGTGTGAAACAGGGCTCTGGACGCTGGGT
GTTCCGGCGGCGCCGTGA
back to top