mRNA_F-serratus_M_contig6336.17228.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig6336.17228.1 vs. uniprot
Match: A0A6H5KMF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF9_9PHAE) HSP 1 Score: 151 bits (381), Expect = 5.460e-34 Identity = 82/140 (58.57%), Postives = 100/140 (71.43%), Query Frame = 2
Query: 233 IRSVAMPEPKHRIGPAGVSSDVTLHELPKARLEDLTKICQHYEQKCRGINSSDSEAARCLFELSREIQQVVLTLTQEESDRTLAAEKEEKWFKEEWEKIFGPDASLIQDASSIEIPLPCDGVSS------AGEAENSKDA 634
+RSVAMPEP+HRIGPAGVSS V+L LP ARLEDLTKICQHYE+KC G+ +SDS AAR LF+LSRE+QQV L QE S +TL + E+ KE W + FGPDA L++DA+S+ +PL V S AGE + DA
Sbjct: 1 MRSVAMPEPQHRIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQERSSQTLGNLQAEQLLKE-WNESFGPDAPLLRDAASLGVPLSAGFVVSEAGDGGAGETKGGNDA 139
BLAST of mRNA_F-serratus_M_contig6336.17228.1 vs. uniprot
Match: D7FTA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA0_ECTSI) HSP 1 Score: 131 bits (329), Expect = 1.960e-28 Identity = 72/129 (55.81%), Postives = 89/129 (68.99%), Query Frame = 2
Query: 266 RIGPAGVSSDVTLHELPKARLEDLTKICQHYEQKCRGINSSDSEAARCLFELSREIQQVVLTLTQEESDRTLAAEKEEKWFKEEWEKIFGPDASLIQDASSIEIPLPCDGVSS------AGEAENSKDA 634
RIGPAGVSS V+L LP ARLEDLTKICQHYE+KC G+ +SDS AAR LF+LSRE+QQV L Q+ S +TL + E+ EEW + FGPDA L++DA+S+ +PL V S AGE + DA
Sbjct: 61 RIGPAGVSSGVSLRSLPPARLEDLTKICQHYEEKCSGVYASDSAAARYLFQLSREVQQVAAALEQDRSSQTLGNLQAEQLL-EEWNESFGPDAPLLRDAASLGVPLSAGVVGSETGDGGAGETKGDNDA 188
BLAST of mRNA_F-serratus_M_contig6336.17228.1 vs. uniprot
Match: A0A7S2PFX9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PFX9_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 8.260e-11 Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = 2
Query: 110 KERWSRGRVMKPAASLGRQAQQMNEGIEKGWRLSHTVRPEEIRSVAMPEPKHRIGPAGVSSDVTLHELPKARLEDLTKICQHYEQKCRGINSSDSEAARCLFELSREIQQVVLTLTQEESDRTLAAEKEEKWFKE------EWEKIFGPDASLIQDA 562
K RWS +K SLG+ + E + L T +P +PEP+HR+GP GVSS V+ +LP L+ + IC HYE KC G ++ A+R LF++ RE+ V L + AA+++EK F+E EW + FG D ++ +D+
Sbjct: 7 KNRWSM--PVKDGVSLGK----LPEARDAQAALPRTKKP------LIPEPRHRVGPKGVSSGVSFRKLPDTSLQAIINICSHYEAKCSG--KYETLASRYLFQMGREVLSQVYALAE-------AAKEDEKVFQELEGAVHEWNEHFG-DLTVRKDS 141
BLAST of mRNA_F-serratus_M_contig6336.17228.1 vs. uniprot
Match: A0A0L0D731_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D731_THETB) HSP 1 Score: 69.7 bits (169), Expect = 1.100e-8 Identity = 34/101 (33.66%), Postives = 60/101 (59.41%), Query Frame = 2
Query: 233 IRSVAMPEPKHRIGPAGVSSDVTLHELPKARLEDLTKICQHYEQKCRGINSSDSEAARCLFELSREIQQVVLTLTQEESDRTLAAEKEEKWFKEEWEKIFG 535
+ V + EP HR+ P VSS ++ +LP+A L +L ++C HYE K G S+A R ++++++E++Q++ L +EE +L + E+ EW +FG
Sbjct: 1 MAKVVINEPVHRVAPEPVSSGISFRKLPRASLIELGRVCDHYEAKGAGTYGRGSKATRYVYDMAKEVRQIIRGLEEEERAASLHTQHLER-IVGEWHDVFG 100
BLAST of mRNA_F-serratus_M_contig6336.17228.1 vs. uniprot
Match: K0TQI1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQI1_THAOC) HSP 1 Score: 58.5 bits (140), Expect = 4.770e-5 Identity = 28/69 (40.58%), Postives = 47/69 (68.12%), Query Frame = 2
Query: 242 VAMPEPKHRIGPAG-VSSDVTLHELPKARLEDLTKICQHYEQKCRGINSSDSEAARCLFELSREIQQVV 445
V + EP+HR+GP G VSS ++ +LP L+++ KIC+HY+ KC G S A+R +++++ EI+ +V
Sbjct: 526 VRVAEPRHRVGPKGIVSSGISFRDLPPPSLDEIKKICEHYQVKCSGTYKS--LASRYVYQMATEIEGLV 592 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6336.17228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6336.17228.1 >prot_F-serratus_M_contig6336.17228.1 ID=prot_F-serratus_M_contig6336.17228.1|Name=mRNA_F-serratus_M_contig6336.17228.1|organism=Fucus serratus male|type=polypeptide|length=510bp MKPAASLGRQAQQMNEGIEKGWRLSHTVRPEEIRSVAMPEPKHRIGPAGVback to top mRNA from alignment at F-serratus_M_contig6336:4573..28340- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6336.17228.1 ID=mRNA_F-serratus_M_contig6336.17228.1|Name=mRNA_F-serratus_M_contig6336.17228.1|organism=Fucus serratus male|type=mRNA|length=23768bp|location=Sequence derived from alignment at F-serratus_M_contig6336:4573..28340- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6336:4573..28340- >mRNA_F-serratus_M_contig6336.17228.1 ID=mRNA_F-serratus_M_contig6336.17228.1|Name=mRNA_F-serratus_M_contig6336.17228.1|organism=Fucus serratus male|type=CDS|length=3060bp|location=Sequence derived from alignment at F-serratus_M_contig6336:4573..28340- (Fucus serratus male)back to top |