mRNA_F-serratus_M_contig6325.17209.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6325.17209.1
Unique NamemRNA_F-serratus_M_contig6325.17209.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6325.17209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6325contigF-serratus_M_contig6325:25..1277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size242
Cds size240
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6325.17209.1prot_F-serratus_M_contig6325.17209.1Fucus serratus malepolypeptideF-serratus_M_contig6325 27..1277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931955.5720894-CDS-F-serratus_M_contig6325:26..711622931955.5720894-CDS-F-serratus_M_contig6325:26..71Fucus serratus maleCDSF-serratus_M_contig6325 27..71 -
1690964075.0241473-CDS-F-serratus_M_contig6325:26..711690964075.0241473-CDS-F-serratus_M_contig6325:26..71Fucus serratus maleCDSF-serratus_M_contig6325 27..71 -
1622931955.5928144-CDS-F-serratus_M_contig6325:410..4881622931955.5928144-CDS-F-serratus_M_contig6325:410..488Fucus serratus maleCDSF-serratus_M_contig6325 411..488 -
1690964075.0367756-CDS-F-serratus_M_contig6325:410..4881690964075.0367756-CDS-F-serratus_M_contig6325:410..488Fucus serratus maleCDSF-serratus_M_contig6325 411..488 -
1622931955.605453-CDS-F-serratus_M_contig6325:1160..12771622931955.605453-CDS-F-serratus_M_contig6325:1160..1277Fucus serratus maleCDSF-serratus_M_contig6325 1161..1277 -
1690964075.048383-CDS-F-serratus_M_contig6325:1160..12771690964075.048383-CDS-F-serratus_M_contig6325:1160..1277Fucus serratus maleCDSF-serratus_M_contig6325 1161..1277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6325.17209.1

>prot_F-serratus_M_contig6325.17209.1 ID=prot_F-serratus_M_contig6325.17209.1|Name=mRNA_F-serratus_M_contig6325.17209.1|organism=Fucus serratus male|type=polypeptide|length=80bp
SRTPAASRESNRVAAVSATAAHRAAAAGAAQGKRISPREAAMIAVKKAAD
GKRRDAARERQQHREMLNAAKAARAASHFQ
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mRNA from alignment at F-serratus_M_contig6325:25..1277-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6325.17209.1 ID=mRNA_F-serratus_M_contig6325.17209.1|Name=mRNA_F-serratus_M_contig6325.17209.1|organism=Fucus serratus male|type=mRNA|length=1253bp|location=Sequence derived from alignment at F-serratus_M_contig6325:25..1277- (Fucus serratus male)
TCCAGGACGCCAGCAGCTTCGCGGGAGTCGAACCGAGTAGCAGCTGTTTC
GGCCACTGCCGCCCACAGGGCAGCGGCAGCGGGAGCGGCTCAAGGAAAAA
GGATATCCCCTCGCGAGGTGATGGAACTCCTAGTGACTGGGCGGAGACTC
ACAGTACCCACAGCTGAATGTACTCTAATGTATTGTACGCTCGCGCTGCT
TTCATCTTTGAAGGTAGTACTACAACAGCACTACATTAACACTATTAATA
TTATTAATTACCAGGTATTATAATAGCTACCAGGTACTGTCTTGTAGCAC
TGCGAGGTCTGTTTTTGGAAAAACGATTAAAAAAAACTCATTCCTTGGCG
CCTGGCAATTCAAAATAATATCAAGCTTTTATTGTACCGCAGGTATAGAT
ACACACTATTAATAGCTCTTTATATCATAAAAAAAGGTACACCTTTTTTT
ATACCCTGTTTCGTAACTTAATGTCTAATGGTTATGAATTGAAGTCTAGA
CTATAATAGTCGCGGGTCGTGGAGAGCATTTTCCCGACTTGACTTAAGTT
CGTCTAGATTTTGTAGAGAGTGTCGTCGTGTATCATAGCTATGAATATAT
ATTGAACAGCATCTACCGGTCGGTATGTAGACTATACCAGTATGATTTGC
TTCAGTCTGCACTATTTAATACCATCAGCTACAACAACACTTTAATAACG
CCCATTTCTTGCACCCAACTATTGATAACTCATCATGGTATATGGCGGCG
TGATGGTATATCATTCGACTCTGCTGCCAATCATCGCAGGCCGCCATGAT
TGCGGTGAAGAAAGCCGCAGATGGCAAAAGGCGCGACGCCGCTCGGGAAA
GGCAGCAGCACCGTGAGGTACGGAACGAGAAAGAAAAGGCCGTGACCCTC
CAGAAAATTAATTGGTGATATTACTGCATGACAACTTGGAAGTTTGAAGT
TAAGTTTTGGCATACCTGCCCGAAACAAACGCTACATGTAGAATATATAC
AGTATAGTATACCTCTTTTTCACCATCACGTTTTTTTTCGAGATTTGGAT
GTTTTGTGTTGTTAAATCAAATATATATGGTACAGTATAGTATATGTCAG
TAGTGTGTTATTTTTCTTCCGCAGGAGAACTCATCATTTTTTGTCCAGAT
CGAACACGAATGCTTGTGTAAACTAATGTCTCTTGATTATAATATACTTT
TGACAGATGCTGAACGCCGCAAAGGCGGCACGAGCGGCAAGCCATTTTCA
ACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6325:25..1277-

>mRNA_F-serratus_M_contig6325.17209.1 ID=mRNA_F-serratus_M_contig6325.17209.1|Name=mRNA_F-serratus_M_contig6325.17209.1|organism=Fucus serratus male|type=CDS|length=480bp|location=Sequence derived from alignment at F-serratus_M_contig6325:25..1277- (Fucus serratus male)
TCCAGGACGCCAGCAGCTTCGCGGGAGTCGAACCGAGTAGCAGCTGTTTC
GGCCACTGCCGCCCACAGGGCAGCGGCAGCGGGAGCGGCTCAAGGAAAAA
GGATATCCCCTCGCGAGTCCAGGACGCCAGCAGCTTCGCGGGAGTCGAAC
CGAGTAGCAGCTGTTTCGGCCACTGCCGCCCACAGGGCAGCGGCAGCGGG
AGCGGCTCAAGGAAAAAGGATATCCCCTCGCGAGGCCGCCATGATTGCGG
TGAAGAAAGCCGCAGATGGCAAAAGGCGCGACGCCGCTCGGGAAAGGCAG
CAGCACCGTGAGGCCGCCATGATTGCGGTGAAGAAAGCCGCAGATGGCAA
AAGGCGCGACGCCGCTCGGGAAAGGCAGCAGCACCGTGAGATGCTGAACG
CCGCAAAGGCGGCACGAGCGGCAAGCCATTTTCAAATGCTGAACGCCGCA
AAGGCGGCACGAGCGGCAAGCCATTTTCAA
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