mRNA_F-serratus_M_contig6324.17208.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6324.17208.1
Unique NamemRNA_F-serratus_M_contig6324.17208.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6324.17208.1 vs. uniprot
Match: A0A6H5KZJ7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZJ7_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.130e-16
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   28 SLMLNPYHLSPWGKKKVLGKRVEEGEGLGPRKEPFELAACQLSARWQAVP 177
            +L+LNPY+LS WGKKK+LG+ VEEGEGLGPRKE FELAA QLS RW++ P
Sbjct: 1715 ALILNPYYLSSWGKKKILGQCVEEGEGLGPRKELFELAARQLSERWRSPP 1764
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BLAST of mRNA_F-serratus_M_contig6324.17208.1 vs. uniprot
Match: D7G395_ECTSI (Possible MAPK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G395_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.780e-15
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   28 SLMLNPYHLSPWGKKKVLGKRVEEGEGLGPRKEPFELAACQLSARWQA 171
            +L+LNPY+LS WG KKVLG+ VEEGEGLGPRKE FELA+ QLS RW++
Sbjct: 2035 ALILNPYYLSSWGNKKVLGQCVEEGEGLGPRKELFELASRQLSERWRS 2082
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BLAST of mRNA_F-serratus_M_contig6324.17208.1 vs. uniprot
Match: A0A7S2RLZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLZ2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.400e-10
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   16 RSTPSLMLNPYHLSPWGKKKVLGKRVEEGEGLGPRKEPFELAACQLSARWQAV 174
            R   S +L PY+ S +GKK V G+ VEEGEGLGPRKE F L + QL A W+ V
Sbjct:  158 REAGSRLLCPYYRSAFGKKTVEGQAVEEGEGLGPRKELFSLVSAQLQASWRRV 210
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BLAST of mRNA_F-serratus_M_contig6324.17208.1 vs. uniprot
Match: A0A7S2RM16_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RM16_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.840e-10
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   16 RSTPSLMLNPYHLSPWGKKKVLGKRVEEGEGLGPRKEPFELAACQLSARWQAV 174
            R   S +L PY+ S +GKK V G+ VEEGEGLGPRKE F L + QL A W+ V
Sbjct:  260 REAGSRLLCPYYRSAFGKKTVEGQAVEEGEGLGPRKELFSLVSAQLQASWRRV 312
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BLAST of mRNA_F-serratus_M_contig6324.17208.1 vs. uniprot
Match: A0A7S2B4K7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B4K7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.310e-7
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   34 MLNPYHLSPWGKKKVLGKRVEEGEGLGPRKEPFELAACQLSARWQAV 174
            +L PY+ SP+GKK   G+ VEEGEGLGPRKE + L + +L + W+  
Sbjct:   50 VLCPYYRSPFGKKVSEGESVEEGEGLGPRKELYSLLSGRLHSSWRTA 96
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BLAST of mRNA_F-serratus_M_contig6324.17208.1 vs. uniprot
Match: A0A7S3ZUA9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUA9_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 8.190e-6
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:   28 SLMLNPYHLSPWGKKKVLGKRVEEGEGLGPRKEPFELAACQLSARWQAV 174
            S ++ PY+  P+G+K V G  VEEGEGLGPRKE F L    ++  W  V
Sbjct: 1146 SFVVCPYYRVPFGQKYVEGSAVEEGEGLGPRKELFALLGGAVTRSWTPV 1194
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BLAST of mRNA_F-serratus_M_contig6324.17208.1 vs. uniprot
Match: A0A7S1TNN7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TNN7_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.840e-5
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   34 MLNPYHLSPWGKKKVLGKRVEEGEGLGPRKEPFELAACQLS 156
            +L+PY+ S +G K++ G  VEEGEGLGPRKE F L A Q +
Sbjct:  322 ILSPYYKSIFGNKRMGGSAVEEGEGLGPRKELFSLCADQAT 362
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6324.17208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KZJ7_9PHAE1.130e-1674.00Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G395_ECTSI4.780e-1572.92Possible MAPK n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A7S2RLZ2_9STRA6.400e-1056.60Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2RM16_9STRA8.840e-1056.60Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2B4K7_9STRA3.310e-751.06Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3ZUA9_9STRA8.190e-648.98Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1TNN7_9STRA2.840e-556.10Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6324contigF-serratus_M_contig6324:694..870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue3.2e-12
Seed eggNOG ortholog2880.D7G395
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activity
EggNOG OGsKOG0593@1,KOG0593@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931955.5197434-CDS-F-serratus_M_contig6324:693..8701622931955.5197434-CDS-F-serratus_M_contig6324:693..870Fucus serratus maleCDSF-serratus_M_contig6324 694..870 +
1690964075.0098002-CDS-F-serratus_M_contig6324:693..8701690964075.0098002-CDS-F-serratus_M_contig6324:693..870Fucus serratus maleCDSF-serratus_M_contig6324 694..870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6324.17208.1prot_F-serratus_M_contig6324.17208.1Fucus serratus malepolypeptideF-serratus_M_contig6324 694..870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6324.17208.1

>prot_F-serratus_M_contig6324.17208.1 ID=prot_F-serratus_M_contig6324.17208.1|Name=mRNA_F-serratus_M_contig6324.17208.1|organism=Fucus serratus male|type=polypeptide|length=59bp
HSSSPRSTPSLMLNPYHLSPWGKKKVLGKRVEEGEGLGPRKEPFELAACQ
LSARWQAVP
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mRNA from alignment at F-serratus_M_contig6324:694..870+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6324.17208.1 ID=mRNA_F-serratus_M_contig6324.17208.1|Name=mRNA_F-serratus_M_contig6324.17208.1|organism=Fucus serratus male|type=mRNA|length=177bp|location=Sequence derived from alignment at F-serratus_M_contig6324:694..870+ (Fucus serratus male)
CATTCTTCATCACCACGATCAACACCCTCCCTGATGCTGAACCCATACCA
CCTTTCACCTTGGGGCAAGAAGAAAGTTCTTGGAAAGCGTGTGGAGGAAG
GGGAAGGCCTAGGTCCCAGGAAGGAGCCCTTCGAGCTTGCCGCGTGTCAG
CTGAGTGCTCGCTGGCAGGCCGTGCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6324:694..870+

>mRNA_F-serratus_M_contig6324.17208.1 ID=mRNA_F-serratus_M_contig6324.17208.1|Name=mRNA_F-serratus_M_contig6324.17208.1|organism=Fucus serratus male|type=CDS|length=354bp|location=Sequence derived from alignment at F-serratus_M_contig6324:694..870+ (Fucus serratus male)
CATTCTTCATCACCACGATCAACACCCTCCCTGATGCTGAACCCATACCA
CCTTTCACCTTGGGGCAAGAAGAAAGTTCTTGGAAAGCGTGTGGAGGAAG
GGGAAGGCCTAGGTCCCAGGAAGGAGCCCTTCGAGCTTGCCGCGTGTCAG
CTGAGTGCTCGCTGGCAGGCCGTGCCGCATTCTTCATCACCACGATCAAC
ACCCTCCCTGATGCTGAACCCATACCACCTTTCACCTTGGGGCAAGAAGA
AAGTTCTTGGAAAGCGTGTGGAGGAAGGGGAAGGCCTAGGTCCCAGGAAG
GAGCCCTTCGAGCTTGCCGCGTGTCAGCTGAGTGCTCGCTGGCAGGCCGT
GCCG
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