mRNA_F-serratus_M_contig6323.17207.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6323.17207.1
Unique NamemRNA_F-serratus_M_contig6323.17207.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6323.17207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6323contigF-serratus_M_contig6323:25295..25624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931955.2856557-CDS-F-serratus_M_contig6323:25294..256241622931955.2856557-CDS-F-serratus_M_contig6323:25294..25624Fucus serratus maleCDSF-serratus_M_contig6323 25295..25624 +
1690964074.8898962-CDS-F-serratus_M_contig6323:25294..256241690964074.8898962-CDS-F-serratus_M_contig6323:25294..25624Fucus serratus maleCDSF-serratus_M_contig6323 25295..25624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6323.17207.1prot_F-serratus_M_contig6323.17207.1Fucus serratus malepolypeptideF-serratus_M_contig6323 25295..25624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6323.17207.1

>prot_F-serratus_M_contig6323.17207.1 ID=prot_F-serratus_M_contig6323.17207.1|Name=mRNA_F-serratus_M_contig6323.17207.1|organism=Fucus serratus male|type=polypeptide|length=110bp
VPPQDACIILEDGEQEVRVDLGLEQELEPSSADTDTETSVQQYSPSEGTK
DHEQITASGFLQVGVVSSQGGKESPPQENMDNASPPEHVCTQVGKVPDET
NVTSEESKTY
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mRNA from alignment at F-serratus_M_contig6323:25295..25624+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6323.17207.1 ID=mRNA_F-serratus_M_contig6323.17207.1|Name=mRNA_F-serratus_M_contig6323.17207.1|organism=Fucus serratus male|type=mRNA|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig6323:25295..25624+ (Fucus serratus male)
GTTCCACCGCAAGATGCATGTATTATTTTGGAGGATGGAGAACAAGAGGT
TAGAGTGGACCTGGGGCTAGAACAAGAGCTCGAACCATCATCGGCTGACA
CGGACACCGAAACGTCCGTACAGCAATATTCCCCGAGCGAGGGGACGAAG
GACCACGAACAAATCACCGCCAGCGGCTTCTTGCAAGTAGGCGTGGTTTC
AAGTCAAGGGGGAAAAGAATCACCACCCCAAGAAAACATGGACAACGCAT
CACCACCGGAACACGTCTGTACCCAAGTTGGGAAAGTTCCGGATGAAACA
AACGTCACCAGCGAAGAGAGCAAAACGTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6323:25295..25624+

>mRNA_F-serratus_M_contig6323.17207.1 ID=mRNA_F-serratus_M_contig6323.17207.1|Name=mRNA_F-serratus_M_contig6323.17207.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig6323:25295..25624+ (Fucus serratus male)
GTTCCACCGCAAGATGCATGTATTATTTTGGAGGATGGAGAACAAGAGGT
TAGAGTGGACCTGGGGCTAGAACAAGAGCTCGAACCATCATCGGCTGACA
CGGACACCGAAACGTCCGTACAGCAATATTCCCCGAGCGAGGGGACGAAG
GACCACGAACAAATCACCGCCAGCGGCTTCTTGCAAGTAGGCGTGGTTTC
AAGTCAAGGGGGAAAAGAATCACCACCCCAAGAAAACATGGACAACGCAT
CACCACCGGAACACGTCTGTACCCAAGTTGGGAAAGTTCCGGATGAAACA
AACGTCACCAGCGAAGAGAGCAAAACGTACGTTCCACCGCAAGATGCATG
TATTATTTTGGAGGATGGAGAACAAGAGGTTAGAGTGGACCTGGGGCTAG
AACAAGAGCTCGAACCATCATCGGCTGACACGGACACCGAAACGTCCGTA
CAGCAATATTCCCCGAGCGAGGGGACGAAGGACCACGAACAAATCACCGC
CAGCGGCTTCTTGCAAGTAGGCGTGGTTTCAAGTCAAGGGGGAAAAGAAT
CACCACCCCAAGAAAACATGGACAACGCATCACCACCGGAACACGTCTGT
ACCCAAGTTGGGAAAGTTCCGGATGAAACAAACGTCACCAGCGAAGAGAG
CAAAACGTAC
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