mRNA_F-serratus_M_contig6321.17204.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6321.17204.1
Unique NamemRNA_F-serratus_M_contig6321.17204.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6321.17204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6321contigF-serratus_M_contig6321:33806..34602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size797
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6321.17204.1prot_F-serratus_M_contig6321.17204.1Fucus serratus malepolypeptideF-serratus_M_contig6321 33832..34287 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931955.1267545-UTR-F-serratus_M_contig6321:33805..338311622931955.1267545-UTR-F-serratus_M_contig6321:33805..33831Fucus serratus maleUTRF-serratus_M_contig6321 33806..33831 +
1690964074.8274572-UTR-F-serratus_M_contig6321:33805..338311690964074.8274572-UTR-F-serratus_M_contig6321:33805..33831Fucus serratus maleUTRF-serratus_M_contig6321 33806..33831 +
1622931955.175818-UTR-F-serratus_M_contig6321:34287..346021622931955.175818-UTR-F-serratus_M_contig6321:34287..34602Fucus serratus maleUTRF-serratus_M_contig6321 34288..34602 +
1690964074.8504167-UTR-F-serratus_M_contig6321:34287..346021690964074.8504167-UTR-F-serratus_M_contig6321:34287..34602Fucus serratus maleUTRF-serratus_M_contig6321 34288..34602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931955.1520007-CDS-F-serratus_M_contig6321:33831..342871622931955.1520007-CDS-F-serratus_M_contig6321:33831..34287Fucus serratus maleCDSF-serratus_M_contig6321 33832..34287 +
1690964074.839709-CDS-F-serratus_M_contig6321:33831..342871690964074.839709-CDS-F-serratus_M_contig6321:33831..34287Fucus serratus maleCDSF-serratus_M_contig6321 33832..34287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6321.17204.1

>prot_F-serratus_M_contig6321.17204.1 ID=prot_F-serratus_M_contig6321.17204.1|Name=mRNA_F-serratus_M_contig6321.17204.1|organism=Fucus serratus male|type=polypeptide|length=152bp
MITQNRCNTVQCGQDGLPSILLPPLRCQPSAHAYLSASRHHTHALPASPH
QTVSVLVTVRRRHSKGSSPAEEDGPPVTVSLHDTHALSAQMYWTIDTKCN
CRQSIGGQPKKYRRYETKNMKILGRPRTSRCVVISSSSTNVVVAAARSGS
A*
back to top

mRNA from alignment at F-serratus_M_contig6321:33806..34602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6321.17204.1 ID=mRNA_F-serratus_M_contig6321.17204.1|Name=mRNA_F-serratus_M_contig6321.17204.1|organism=Fucus serratus male|type=mRNA|length=797bp|location=Sequence derived from alignment at F-serratus_M_contig6321:33806..34602+ (Fucus serratus male)
GGGCATCACAGGCTGGTTATAGACGCATGATAACACAGAATCGCTGCAAT
ACAGTACAGTGCGGTCAGGACGGTCTGCCATCGATTCTTCTGCCGCCCCT
TCGCTGCCAGCCGTCAGCACACGCATACCTGTCTGCCAGCCGTCACCACA
CGCATGCGCTGCCTGCCAGCCCTCACCAAACCGTTTCGGTTTTGGTTACA
GTCCGGCGACGACACTCCAAGGGCAGTTCTCCTGCCGAGGAAGACGGTCC
ACCCGTGACTGTCAGCCTTCATGACACTCACGCCCTCTCTGCTCAGATGT
ACTGGACAATCGACACAAAATGCAATTGTAGACAGAGCATCGGCGGACAG
CCCAAAAAGTATCGAAGATATGAGACCAAAAATATGAAGATACTGGGAAG
ACCGAGGACATCCCGGTGCGTCGTCATCTCAAGCAGTAGTACGAACGTCG
TTGTTGCAGCCGCGCGCAGCGGGTCTGCATAATAAGCTGATGGTTTCAGA
AACTATACTGTGCTGCAGATGCTGCCTGTAGGTTTTGCGAGGCATCGTAA
TGTACTGGTCGGCACGTACCTATATTTGTACTGAGTAGGATTTTACATTG
TACTCCCGGGTAAAATATCTACACATCAGTATAGTACTGCTGTACCATAG
TGTGTGCTGCCCTAGGCCTGCGCGGTCCGCGCGCAGCGAGCGCAAGTGTA
ATACACAGGAATCCTTCGTGATGCATTTTTTTTTTGTGGATGGGTGTGCC
CTGATCAACATCAAGCCGGTTCCCATAACATCCTTATGTTTGCACCA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig6321:33806..34602+

>mRNA_F-serratus_M_contig6321.17204.1 ID=mRNA_F-serratus_M_contig6321.17204.1|Name=mRNA_F-serratus_M_contig6321.17204.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig6321:33806..34602+ (Fucus serratus male)
ATGATAACACAGAATCGCTGCAATACAGTACAGTGCGGTCAGGACGGTCT
GCCATCGATTCTTCTGCCGCCCCTTCGCTGCCAGCCGTCAGCACACGCAT
ACCTGTCTGCCAGCCGTCACCACACGCATGCGCTGCCTGCCAGCCCTCAC
CAAACCGTTTCGGTTTTGGTTACAGTCCGGCGACGACACTCCAAGGGCAG
TTCTCCTGCCGAGGAAGACGGTCCACCCGTGACTGTCAGCCTTCATGACA
CTCACGCCCTCTCTGCTCAGATGTACTGGACAATCGACACAAAATGCAAT
TGTAGACAGAGCATCGGCGGACAGCCCAAAAAGTATCGAAGATATGAGAC
CAAAAATATGAAGATACTGGGAAGACCGAGGACATCCCGGTGCGTCGTCA
TCTCAAGCAGTAGTACGAACGTCGTTGTTGCAGCCGCGCGCAGCGGGTCT
GCATAAATGATAACACAGAATCGCTGCAATACAGTACAGTGCGGTCAGGA
CGGTCTGCCATCGATTCTTCTGCCGCCCCTTCGCTGCCAGCCGTCAGCAC
ACGCATACCTGTCTGCCAGCCGTCACCACACGCATGCGCTGCCTGCCAGC
CCTCACCAAACCGTTTCGGTTTTGGTTACAGTCCGGCGACGACACTCCAA
GGGCAGTTCTCCTGCCGAGGAAGACGGTCCACCCGTGACTGTCAGCCTTC
ATGACACTCACGCCCTCTCTGCTCAGATGTACTGGACAATCGACACAAAA
TGCAATTGTAGACAGAGCATCGGCGGACAGCCCAAAAAGTATCGAAGATA
TGAGACCAAAAATATGAAGATACTGGGAAGACCGAGGACATCCCGGTGCG
TCGTCATCTCAAGCAGTAGTACGAACGTCGTTGTTGCAGCCGCGCGCAGC
GGGTCTGCATAA
back to top