mRNA_F-serratus_M_contig6321.17201.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6321.17201.1
Unique NamemRNA_F-serratus_M_contig6321.17201.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6321.17201.1 vs. uniprot
Match: A0A6H5JEG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 8.310e-7
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:  340 KESNARGPLTTGALYRRSTSTASTAGRLDHELEWVYANADVSEREPDPMQARWNAISELNER 525
            KES+ R P T+GALYR  +   +  G        VY NAD+ E  PDP+QARWNA++E ++R
Sbjct: 1459 KESSERPPRTSGALYRYGSPDLAPGGGSGVSEYVVYVNADIPEGAPDPLQARWNAMTEESDR 1520
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6321.17201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JEG7_9PHAE8.310e-746.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6321contigF-serratus_M_contig6321:7730..11387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons7
Model size689
Cds size465
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931954.644859-UTR-F-serratus_M_contig6321:7729..77651622931954.644859-UTR-F-serratus_M_contig6321:7729..7765Fucus serratus maleUTRF-serratus_M_contig6321 7730..7765 +
1690964074.666584-UTR-F-serratus_M_contig6321:7729..77651690964074.666584-UTR-F-serratus_M_contig6321:7729..7765Fucus serratus maleUTRF-serratus_M_contig6321 7730..7765 +
1622931954.6786134-UTR-F-serratus_M_contig6321:8070..81271622931954.6786134-UTR-F-serratus_M_contig6321:8070..8127Fucus serratus maleUTRF-serratus_M_contig6321 8071..8127 +
1690964074.678731-UTR-F-serratus_M_contig6321:8070..81271690964074.678731-UTR-F-serratus_M_contig6321:8070..8127Fucus serratus maleUTRF-serratus_M_contig6321 8071..8127 +
1622931954.8911781-UTR-F-serratus_M_contig6321:11238..112861622931954.8911781-UTR-F-serratus_M_contig6321:11238..11286Fucus serratus maleUTRF-serratus_M_contig6321 11239..11286 +
1690964074.7491014-UTR-F-serratus_M_contig6321:11238..112861690964074.7491014-UTR-F-serratus_M_contig6321:11238..11286Fucus serratus maleUTRF-serratus_M_contig6321 11239..11286 +
1622931954.967195-UTR-F-serratus_M_contig6321:11304..113871622931954.967195-UTR-F-serratus_M_contig6321:11304..11387Fucus serratus maleUTRF-serratus_M_contig6321 11305..11387 +
1690964074.7617524-UTR-F-serratus_M_contig6321:11304..113871690964074.7617524-UTR-F-serratus_M_contig6321:11304..11387Fucus serratus maleUTRF-serratus_M_contig6321 11305..11387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931954.6936288-CDS-F-serratus_M_contig6321:8127..81601622931954.6936288-CDS-F-serratus_M_contig6321:8127..8160Fucus serratus maleCDSF-serratus_M_contig6321 8128..8160 +
1690964074.6899476-CDS-F-serratus_M_contig6321:8127..81601690964074.6899476-CDS-F-serratus_M_contig6321:8127..8160Fucus serratus maleCDSF-serratus_M_contig6321 8128..8160 +
1622931954.8258238-CDS-F-serratus_M_contig6321:8428..85661622931954.8258238-CDS-F-serratus_M_contig6321:8428..8566Fucus serratus maleCDSF-serratus_M_contig6321 8429..8566 +
1690964074.701556-CDS-F-serratus_M_contig6321:8428..85661690964074.701556-CDS-F-serratus_M_contig6321:8428..8566Fucus serratus maleCDSF-serratus_M_contig6321 8429..8566 +
1622931954.8456542-CDS-F-serratus_M_contig6321:9862..99241622931954.8456542-CDS-F-serratus_M_contig6321:9862..9924Fucus serratus maleCDSF-serratus_M_contig6321 9863..9924 +
1690964074.7135298-CDS-F-serratus_M_contig6321:9862..99241690964074.7135298-CDS-F-serratus_M_contig6321:9862..9924Fucus serratus maleCDSF-serratus_M_contig6321 9863..9924 +
1622931954.863731-CDS-F-serratus_M_contig6321:10101..102641622931954.863731-CDS-F-serratus_M_contig6321:10101..10264Fucus serratus maleCDSF-serratus_M_contig6321 10102..10264 +
1690964074.7254221-CDS-F-serratus_M_contig6321:10101..102641690964074.7254221-CDS-F-serratus_M_contig6321:10101..10264Fucus serratus maleCDSF-serratus_M_contig6321 10102..10264 +
1622931954.8786771-CDS-F-serratus_M_contig6321:11169..112381622931954.8786771-CDS-F-serratus_M_contig6321:11169..11238Fucus serratus maleCDSF-serratus_M_contig6321 11170..11238 +
1690964074.734879-CDS-F-serratus_M_contig6321:11169..112381690964074.734879-CDS-F-serratus_M_contig6321:11169..11238Fucus serratus maleCDSF-serratus_M_contig6321 11170..11238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6321.17201.1prot_F-serratus_M_contig6321.17201.1Fucus serratus malepolypeptideF-serratus_M_contig6321 8128..11238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6321.17201.1

>prot_F-serratus_M_contig6321.17201.1 ID=prot_F-serratus_M_contig6321.17201.1|Name=mRNA_F-serratus_M_contig6321.17201.1|organism=Fucus serratus male|type=polypeptide|length=155bp
MPHVEEVDHDLVVQGASPPHSKSAILLVVAAVTCLCISACRKRHCLVEAK
AAKARAKGRRTERAEQEQEDEKQAESRREARRKESNARGPLTTGALYRRS
TSTASTAGRLDHELEWVYANADVSEREPDPMQARWNAISELNERGTTTTK
IAPI*
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mRNA from alignment at F-serratus_M_contig6321:7730..11387+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6321.17201.1 ID=mRNA_F-serratus_M_contig6321.17201.1|Name=mRNA_F-serratus_M_contig6321.17201.1|organism=Fucus serratus male|type=mRNA|length=3658bp|location=Sequence derived from alignment at F-serratus_M_contig6321:7730..11387+ (Fucus serratus male)
CGGAATCGATGGCGTGGGCTCTCGGCCGAGGTCAAGGTAAGGACTGGTGT
CGCTGCCAAGATATTCAAACTACGAATAGGCGTCTACAGAGTACATGTAG
AACTGTGGCGGTGACGTTTTTTCCGCAGCGCTTTTACTACATGACCCTGA
CCCTGACTCTGATCCTGACCCTCGTAACTCAGGCACGAGGTGCTGACCAG
CTGACTACACGAACACGTCACCGAACGACCCTTGTAAACTCGTTGACGAT
GAACGCATAAGGGCAAGAAAGAGGCGTACGCATCTCCTCTACGCCCTAAC
CGATCGTTTTCCGTCTGCCTCATCGCTCATTCTCGCAGAAGGAGTTTACT
CCCAAAGTCGTGACCGGCTGGGTTAAGCAAGCCCTCTCCGTCCCCTTCAT
GCCACACGTTGAGGAGGTGGACCATGATTTGGTGAGTTCTGGGCTCGAAG
TTTTGGAAATATGGTATGAAATGTACTGATAGTAGAAGCTCGTACACAGA
GAGAGCTCCATGCCTTAAGCGAGAGAGCATGGCGCATGATGCCGTGCACA
CCAGGTAGCTCTCGAGCAAATTCCAGCAAGTCCGATACAGGTAGAGAGAG
GTCTGTTGGACAGCAATATCGTCGCAAACGTTGCTCGTTACGAGATAATG
CAGTCACTACAGCAAGATGCCTCTTTTGCATTGTACTCGACCCGAGCAGG
TCGTCCAAGGAGCGTCCCCGCCCCACTCCAAATCGGCGATCCTTTTGGTG
GTGGCTGCCGTGACCTGCCTGTGCATTTCGGCGTGCCGGAAAAGGCATTG
TCTGGTAGAGGCGAAGGCGGCTAAGGCCAGGGCGAAGGTGTGATATGCTT
CGGTCTGAGGTATCATTTCGTTATACGATGCTTCAGTCTAAGGTATCATG
TCGCCTCGACAGTCGCTCAAGGGTTCCGCAAAACTGTGGAACTCAACCAA
TCCGGCGATCACCGCCGTTCGGCGGTGGTTTGGAGAACAACAAATGTTAC
GTTTCTTTTCATGGCACTACAAAAACATTGTATTATAAAGCACATATCAT
ACCACAGCCGTACTACATGATGAGATACGTGTAGATTGTAAATTTCCCTG
CACGGTACTGTATATTACTTGCTACTACTGTATACTGGTACTATAAAGTA
CTATAATAATATGTGATGACCATGCACACAACGTTTATCCTAACAGTTAG
GGCCGCTCTAGACGTAACTCAACGCTTCCAAATTTTGGAAAAGTTTGGAA
GGTCATTCCAGACAGATTATGTCAGCAGTTGAAGTAAAGGTTTGGAAAAG
CACAACCCCATTTTAGATGGCATGATATGCCTCCGAACACTTCGAACACC
TTTTGGGCTTTGGGACCCACAGATGTCTGCACCCCGTGAGCTGACTTGAG
CTGACCTATTCTTATTTTCCGTGGCTATATGTGCACCCCAGAGGGGTTGT
AACAGCACACGTATGCTTTCCAAACTTTTCGAATGGAAATAGTCGAGCAG
CGACCTCGAGGTGCTCGTTCATTTCCAAATTTTGAAAATATTCAAACTTT
CCCATTTTTTTTATGAGGTCTAGCATGGCCCTTACTCTATTTTTTTTCAT
CTCTCAAGGCTTACAATCACGTCCTCTGACTTTTGAAGTGTGTTTTAAAG
AGAGGACCTGGTATAATAGTATACTTCTATACGGAGCACTCCAGGTACTA
GATCTACTGCACTGGAGTGTAGTGTGCTGTATTGCACATTCGTTTGACTT
GTGGAGGTGTGAATGGTCATAATGTAAAGTGTACCTTTTGAAGATTCGGA
ACTCAAAGCTGCTAACACCACCTTCACAGCTGCTAACACCGCCACGGCTG
TCCACAACCCCTCCGTAGCTTCTAACAATAACAACCCTGTGGCAGCCGAA
ACGCCCCAGCTGGAGATGTCCTCGTCCAACCCCCGTTTCAGCATGATGTC
GAACCATCCTACGATTTACGCTTCATGATTCCACCCCACACTACTTGTAT
GATATCATTCATACTCAGTATATCTTTTCAACACCCACCAAGTATTAGTA
GCATCTGACAAGACCATTATAACAGTATCATAACATTCCACAACGCTCGG
CTCTCTAAATGCAACATCCTCTCCTCCTTGCAGGGTCGCCGAACGGAACG
AGCAGAGCAAGAGCAAGAGGATGAAAAGCAGGCCGAGTCGAGGAGGTGAT
TGATGTGTGAATGAAGTCTACCCTCATGTCGCAAGCCCCAACAGCTTTGA
ACCTTGAATGGATGGATGACCTGACCTGACCTACCCATCCCACCCCTGAC
ACCTCCAAGCCTTTGTTTTATTGGTCGAACTCCCAACGAAAACAAAAAAC
ACGTGTTGCTGTTCTGTCGCAGGGAAGCGAGGCGGAAAGAGAGCAATGCC
AGGGGGCCCCTCACCACTGGAGCCCTCTACCGTCGCTCCACAAGCACCGC
AAGCACCGCGGGACGCCTGGACCACGAGTTGGAGTGGGTGTACGCGAACG
CTGATGTCTCTGAAAGGGAGCCGGACCCCATGCAGGTGCGCTATTTAGAA
GAGCAGAAGCGTTCTCGATAACCCACCCCACGCGTGAGTTTGCTACATAG
GCGTCAATACTGCTGCTAGTCGTTTGTGGGTCCTTGAAGACCTTCGAGCG
AACTTGGGCGCATGGTGTTACGCCACGGCATTCGGTTGTAGCCGACACGT
ATGTGCAGGACAGGCTAAGGCGAGATGAGATGAGATACAGAATCATATCC
GAAATATTTTATTTAATACTTGTAGTACCCTGGGCTGGACTGGGCTGGAC
TGGACTGGACTCCATTTTGCAAAAAGAGCGGTGTGTCGTGTCAAAATACC
TCGTATCCTGCTTATAGATTTCACTAACCTGTGGAGCTTTATTTTTCTGC
AACAGTAGTCTAGAGGTAAGTATTTGACTTACTGTATGTGTCTTGCAACA
CGAGAAATTGCCCTGCACGGTACTGTATCTTGCTTGCTATCAATACTACT
GTATACTATATAGTACTATAATAATATGATTATGTTAGACTACAACTACT
GGTACCTAACTTGTGAAAGGGTCACATTAATATATATATATATATATTTT
TCATCTCACTTCTAGCCGATGGGCCTCAACGTTGCCATCTTGTCAATGCC
TGTGGTCACTAAGGATCTTCTCATCTCTCCCCGGTTCACGCCTTACGATT
ATTTATCGTTATCACAATGCGTGCAAGTTGGCAAGTTCAGCGCTCTTGCA
ACTCGTCGACCAATGGTTGAATTTTATTTACTACGAAAAAACGTTCTCAC
GACTTCTGCACAACAGTATAGAGATAATTGTAAAATGCGTTCTACACAAC
GACGCGATTCTTTTTACACAGCGTACTTCAAAACACGGCTGTACCTCACA
AAGCAGTCCACTACATTTACAACGCATTTCACAACCACAGGCCCGGTGGA
ACGCCATATCGGAGTTGAACGAGCGCGGTACGACCACGACCAAGATCGCT
CCGATTTAGCACCTCGGAGGACAAACACCGTCGCGCCATTGTATGGCAAC
TCCCGTGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAGGCGACGCAAGGCG
TAATCACCAAGCACCTTCGGCAAGTGCAGCACCAGCAGAACCGGCAGATA
AGGACGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6321:7730..11387+

>mRNA_F-serratus_M_contig6321.17201.1 ID=mRNA_F-serratus_M_contig6321.17201.1|Name=mRNA_F-serratus_M_contig6321.17201.1|organism=Fucus serratus male|type=CDS|length=930bp|location=Sequence derived from alignment at F-serratus_M_contig6321:7730..11387+ (Fucus serratus male)
ATGCCACACGTTGAGGAGGTGGACCATGATTTGATGCCACACGTTGAGGA
GGTGGACCATGATTTGGTCGTCCAAGGAGCGTCCCCGCCCCACTCCAAAT
CGGCGATCCTTTTGGTGGTGGCTGCCGTGACCTGCCTGTGCATTTCGGCG
TGCCGGAAAAGGCATTGTCTGGTAGAGGCGAAGGCGGCTAAGGCCAGGGC
GAAGGTCGTCCAAGGAGCGTCCCCGCCCCACTCCAAATCGGCGATCCTTT
TGGTGGTGGCTGCCGTGACCTGCCTGTGCATTTCGGCGTGCCGGAAAAGG
CATTGTCTGGTAGAGGCGAAGGCGGCTAAGGCCAGGGCGAAGGGTCGCCG
AACGGAACGAGCAGAGCAAGAGCAAGAGGATGAAAAGCAGGCCGAGTCGA
GGAGGGTCGCCGAACGGAACGAGCAGAGCAAGAGCAAGAGGATGAAAAGC
AGGCCGAGTCGAGGAGGGAAGCGAGGCGGAAAGAGAGCAATGCCAGGGGG
CCCCTCACCACTGGAGCCCTCTACCGTCGCTCCACAAGCACCGCAAGCAC
CGCGGGACGCCTGGACCACGAGTTGGAGTGGGTGTACGCGAACGCTGATG
TCTCTGAAAGGGAGCCGGACCCCATGCAGGGAAGCGAGGCGGAAAGAGAG
CAATGCCAGGGGGCCCCTCACCACTGGAGCCCTCTACCGTCGCTCCACAA
GCACCGCAAGCACCGCGGGACGCCTGGACCACGAGTTGGAGTGGGTGTAC
GCGAACGCTGATGTCTCTGAAAGGGAGCCGGACCCCATGCAGGCCCGGTG
GAACGCCATATCGGAGTTGAACGAGCGCGGTACGACCACGACCAAGATCG
CTCCGATTTAGGCCCGGTGGAACGCCATATCGGAGTTGAACGAGCGCGGT
ACGACCACGACCAAGATCGCTCCGATTTAG
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