mRNA_F-serratus_M_contig632.17191.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig632.17191.1 vs. uniprot
Match: A0A813K9Q7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K9Q7_POLGL) HSP 1 Score: 68.9 bits (167), Expect = 2.160e-9 Identity = 41/116 (35.34%), Postives = 55/116 (47.41%), Query Frame = 2
Query: 170 GDWRCNGCGHHVFASRQACPRCNMAKQYHHRDDDHNHLDDEGTGQYGNHEGQHGGTTSWADS---------YAPSPRENSRSQHKPGDWDCPSCQFHNFASRQVCFRCDENRPRGP 490
GDW C CG+H FASR+ C +C+ AK + G YG GG + YAP+P + ++ +PGDW CPSC HN+ASR+ C RC + P
Sbjct: 141 GDWDCEACGNHNFASREVCNKCSGAKT-------------DAGGGYG---AVRGGXXXXRPAPSPYQLPQMYAPAPLQ-AQGNMRPGDWACPSCNNHNYASRENCNRCQRPKNTPP 239
BLAST of mRNA_F-serratus_M_contig632.17191.1 vs. uniprot
Match: I0Z1Q0_COCSC (Queuine tRNA-ribosyltransferase accessory subunit 2 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z1Q0_COCSC) HSP 1 Score: 67.4 bits (163), Expect = 3.530e-8 Identity = 44/129 (34.11%), Postives = 56/129 (43.41%), Query Frame = 2
Query: 128 RRSNQP---RQDLEWKRGDWRCNGCGHHVFASRQACPRCNMAKQYHHRDDDHNHLDDEGTGQYGNHEGQHGGTTSWADSYAPSPRENSRSQHKPGDWDCPSCQFHNFASRQVCFRCDENRPRGPGVHQG 505
RR +P R+ E + GDW C C + FA R C +CN + E G G D++ PR + + KPGDW CP C HNFASR CFRC+ RP G +G
Sbjct: 753 RRDQEPFGERRTFEARAGDWPCPACNANNFARRTECFQCNEPRP-------------ESAGPVPESRFSSGPRYGQRDNFRDGPRREAPAM-KPGDWMCPECNGHNFASRADCFRCNFPRPAEAGPPRG 867
BLAST of mRNA_F-serratus_M_contig632.17191.1 vs. uniprot
Match: A0A2E4T2E7_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E4T2E7_9EURY) HSP 1 Score: 64.3 bits (155), Expect = 4.440e-8 Identity = 38/108 (35.19%), Postives = 48/108 (44.44%), Query Frame = 2
Query: 164 KRGDWRCNGCGHHVFASRQACPR--CNMAKQYHHRDDDHNHLDDEGTGQYGNHEGQHGGTTSWADSYAPSPRENSRSQHKPGDWDCPSCQFHNFASRQVCFRCDENRP 481
K GDW C C +H FA+++ C R C K + +G G+ G GG S KPGDW+CP C HNFA R+VC RCD +P
Sbjct: 108 KSGDWVCPKCKNHNFANKKVCNRTGCEQPKPK---------VVGKGRDSRGHRPGGSGGFRD--------------SNMKPGDWNCPKCNNHNFAKREVCNRCDTRKP 192
BLAST of mRNA_F-serratus_M_contig632.17191.1 vs. uniprot
Match: A0A7S2STL9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STL9_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 5.650e-8 Identity = 40/123 (32.52%), Postives = 52/123 (42.28%), Query Frame = 2
Query: 170 GDWRCNGCGHHVFASRQACPRCNMAKQYHHRDDDHNHLDDEGTGQYGNHEGQHGGTTSWADSYAPSPRENSRSQHKPGDWDCPSCQFHNFASRQVCFRCDENRPRGPGVHQGGWQSTASTFPA 538
GDW C CG VFAS+ C +C + +G G YG + + GDWDCPSC H FASR CF+C P GPG GG+ + ++ +PA
Sbjct: 41 GDWDCPSCGALVFASKSNCYKCQTPRP-------------DGGGGYGXXXXXXXXXXXXXXXXXXXXXXXXXDR-RAGDWDCPSCGAHCFASRSTCFKCGTPNP-GPGGPDGGYGAPSTEYPA 148
BLAST of mRNA_F-serratus_M_contig632.17191.1 vs. uniprot
Match: A0A8H7PJ54_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PJ54_MORIS) HSP 1 Score: 66.2 bits (160), Expect = 7.250e-8 Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 2
Query: 383 RSQHKPGDWDCPSCQFHNFASRQVCFRCDENRPRGP 490
R+QH+PGDWDCP+C FHNFASR+ CF+C+ P P
Sbjct: 418 RTQHRPGDWDCPNCSFHNFASRKHCFKCNAENPDAP 453
BLAST of mRNA_F-serratus_M_contig632.17191.1 vs. uniprot
Match: UPI001E672EAC (RNA-binding protein cabeza-like isoform X7 n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E672EAC) HSP 1 Score: 63.2 bits (152), Expect = 7.830e-8 Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 2
Query: 350 DSYAPSPRENSRSQHKPGDWDCPSCQFHNFASRQVCFRC 466
D Y+ R +SRS KPGDWDCPSCQF NFASR CF+C
Sbjct: 67 DRYSDQDRYSSRSSSKPGDWDCPSCQFSNFASRTACFKC 105
BLAST of mRNA_F-serratus_M_contig632.17191.1 vs. uniprot
Match: A0A8J9WKT8_9CHLO (Probable zinc finger Ran-binding domain-containing protein 2 at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WKT8_9CHLO) HSP 1 Score: 64.7 bits (156), Expect = 1.620e-7 Identity = 42/126 (33.33%), Postives = 55/126 (43.65%), Query Frame = 2
Query: 146 RQDLEWKRGDWRCNGCGHHVFASRQACPRCNMAKQYHHRDDDHNHLDDEGTGQYGNHEGQHGGTTSWADSYAPSPRENSRSQHKPGDWDCPSCQFHNFASRQVCFRCDENRPRGPGVHQGGWQSTA 523
R+ E K GDW C C + FA R C +C+ + G + E + G D++ PR ++ K GDW CP C HNFASR CFRC RP G GG S++
Sbjct: 328 RRGFESKPGDWACPACNANNFARRMECYQCSEPRPA-------------SAGPVPSREPRFGSR----DNFRDGPRRDAPVM-KQGDWMCPECNGHNFASRSDCFRCSFPRPASAGPPSGGRSSSS 435
BLAST of mRNA_F-serratus_M_contig632.17191.1 vs. uniprot
Match: A0A075GQT5_9EURY (RNA-binding Zn-finger-containing protein n=2 Tax=environmental samples TaxID=68359 RepID=A0A075GQT5_9EURY) HSP 1 Score: 62.8 bits (151), Expect = 3.390e-7 Identity = 38/113 (33.63%), Postives = 50/113 (44.25%), Query Frame = 2
Query: 149 QDLEWKRGDWRCNGCGHHVFASRQACPR--CNMAKQYHHRDDDHNHLDDEGTGQYGNHEGQHGGTTSWADSYAPSPRENSRSQHKPGDWDCPSCQFHNFASRQVCFRCDENRP 481
+D K GDWRC C +H +A+++ C R C K G+G + + + + DS KPGDW CPSC HNFASR C RCD +P
Sbjct: 178 RDSNMKPGDWRCPKCKNHNYANKKVCNRTGCEEPKPR------------GGSGSRNSRGHRSSNSGGFRDS-----------NMKPGDWTCPSCSNHNFASRTECNRCDARKP 267
BLAST of mRNA_F-serratus_M_contig632.17191.1 vs. uniprot
Match: A0A2A5VV10_9ARCH (Uncharacterized protein n=4 Tax=Archaea TaxID=2157 RepID=A0A2A5VV10_9ARCH) HSP 1 Score: 62.8 bits (151), Expect = 3.440e-7 Identity = 43/134 (32.09%), Postives = 60/134 (44.78%), Query Frame = 2
Query: 86 RGLSSGSIKVPNSGRRSNQPRQDLEWKRGDWRCNGCGHHVFASRQACPR--CNMAKQYHHRDDDHNHLDDEGTGQYGNHEGQHGGTTSWADSYAPSPRENSRSQHKPGDWDCPSCQFHNFASRQVCFRCDENRP 481
RG +S + NSG +N K GDW C C +H F++++ C R C K G G+ GN G + ++ S KPGDW+CP C+ HN+ASR +C RCD +P
Sbjct: 163 RGGNSRGYRSNNSGGFNNS-----NMKPGDWSCPKCKNHNFSNKKVCNRTGCEEPKPR------------GGGGRGGNSRGYRSNNSGGFNN----------SNMKPGDWNCPKCKNHNYASRTMCNRCDTRKP 269
BLAST of mRNA_F-serratus_M_contig632.17191.1 vs. uniprot
Match: A0A432HDX8_9ARCH (Uncharacterized protein n=6 Tax=Archaea TaxID=2157 RepID=A0A432HDX8_9ARCH) HSP 1 Score: 61.6 bits (148), Expect = 4.270e-7 Identity = 38/113 (33.63%), Postives = 53/113 (46.90%), Query Frame = 2
Query: 149 QDLEWKRGDWRCNGCGHHVFASRQACPR--CNMAKQYHHRDDDHNHLDDEGTGQYGNHEGQHGGTTSWADSYAPSPRENSRSQHKPGDWDCPSCQFHNFASRQVCFRCDENRP 481
+D + GDWRC C +H +A+++ C R C K G G G+ + S+ S + R+ S KPGDW+CP C HN+A R VC RCD +P
Sbjct: 107 RDSHMRPGDWRCPKCKNHNYANKKVCNRTGCEEPKP-------------RGGG------GRDRDSRSYRSSNSGGFRD---SNMKPGDWNCPKCNNHNYARRDVCNRCDTRKP 197 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig632.17191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig632.17191.1 >prot_F-serratus_M_contig632.17191.1 ID=prot_F-serratus_M_contig632.17191.1|Name=mRNA_F-serratus_M_contig632.17191.1|organism=Fucus serratus male|type=polypeptide|length=221bp MALSSENIQDRARGLSSGSIKVPNSGRRSNQPRQDLEWKRGDWRCNGCGHback to top mRNA from alignment at F-serratus_M_contig632:171050..173166- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig632.17191.1 ID=mRNA_F-serratus_M_contig632.17191.1|Name=mRNA_F-serratus_M_contig632.17191.1|organism=Fucus serratus male|type=mRNA|length=2117bp|location=Sequence derived from alignment at F-serratus_M_contig632:171050..173166- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig632:171050..173166- >mRNA_F-serratus_M_contig632.17191.1 ID=mRNA_F-serratus_M_contig632.17191.1|Name=mRNA_F-serratus_M_contig632.17191.1|organism=Fucus serratus male|type=CDS|length=1326bp|location=Sequence derived from alignment at F-serratus_M_contig632:171050..173166- (Fucus serratus male)back to top |