mRNA_F-serratus_M_contig631.17167.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig631.17167.1
Unique NamemRNA_F-serratus_M_contig631.17167.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig631.17167.1 vs. uniprot
Match: UPI00106C8F71 (uncharacterized protein LOC114545138 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C8F71)

HSP 1 Score: 179 bits (455), Expect = 7.340e-53
Identity = 84/141 (59.57%), Postives = 108/141 (76.60%), Query Frame = 1
Query:    1 CKRDKKPVKSFSHANDMDPGSVPNQLKGLTQVEEMLIAKGCPIMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAKDLPIIVVRRQGGEGAHKDLLVRRQRVFTALNWLRVNNPFYSDIHINDDNLNALPDNGSLQDL 423
            C+RDKK  K+FS  NDMDPG+VP QL+GLTQVEEMLI++ CPIM+VYR  GGQRGY GHV+NL Q+I  F+N LP    DLP+++VRRQG +  HKD  VRR +VF A++WL+ NNPF+ DI I+ D +  LP+NG  ++L
Sbjct:   39 CQRDKKSPKNFSTGNDMDPGTVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRQGADETHKDFTVRRHKVFEAISWLKTNNPFFKDIEIDRDIIQRLPENGVPEEL 179          
BLAST of mRNA_F-serratus_M_contig631.17167.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.220e-49
Identity = 102/179 (56.98%), Postives = 126/179 (70.39%), Query Frame = 1
Query:    1 CKRDKKPVKSFSHANDMDPGSVPNQLKGLTQVEEMLIAKGCPIMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAKDLPIIVVRRQGGE-GAHKDLLVRRQRVFTALNWLRVNNPFYSDIHINDDNLNALPDNGSLQDLYESCEGDGIDAERDTGP--QQGGASGGN--EDTESFL 522
            CK+DKK  K FS  N MDPGSVP +L+GLTQ EEMLIA+ CPIMRV  LKGGQ GYGGHVVN+AQ+I     +LPR A D+PII++RR+G E G HKDL VRR RV  AL WL  NNP+Y DI +++  ++ LP +G L+ L  +  G   D+ERD GP  + GG   G+  EDTESF+
Sbjct:   29 CKKDKKSPKLFSADNTMDPGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAADVPIIIIRREGQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTAISQLPVDGQLRGLRTTVSGG--DSERDLGPRGEGGGEEDGDTPEDTESFM 205          
BLAST of mRNA_F-serratus_M_contig631.17167.1 vs. uniprot
Match: A0A6S7G3B5_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G3B5_PARCT)

HSP 1 Score: 171 bits (432), Expect = 1.300e-49
Identity = 81/133 (60.90%), Postives = 99/133 (74.44%), Query Frame = 1
Query:    1 CKRDKKPVKSFSHANDMDPGSVPNQLKGLTQVEEMLIAKGCPIMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAKDLPIIVVRRQGGEGAHKDLLVRRQRVFTALNWLRVNNPFYSDIHINDDNLNALP 399
            CKRDKK  K FS  NDMDPG+VP QL+GLTQVEEMLI++ CPIMRVYR  GGQRGY GHV+NL Q+I  F+N LP    DLP+++VRR G E  H+D  VRR +V  A+ WL+ NNPF+ DI I+ D + +LP
Sbjct:  166 CKRDKKSPKKFSAENDMDPGTVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKDIEIDRDVIQSLP 298          
BLAST of mRNA_F-serratus_M_contig631.17167.1 vs. uniprot
Match: A0A6S7JXT5_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JXT5_PARCT)

HSP 1 Score: 173 bits (438), Expect = 2.140e-49
Identity = 83/141 (58.87%), Postives = 103/141 (73.05%), Query Frame = 1
Query:    1 CKRDKKPVKSFSHANDMDPGSVPNQLKGLTQVEEMLIAKGCPIMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAKDLPIIVVRRQGGEGAHKDLLVRRQRVFTALNWLRVNNPFYSDIHINDDNLNALPDNGSLQDL 423
            CKRDKK  K FS  NDMDPG VP QL+GLTQVEEMLI++ CPIMRVYR  GGQRGY GHV+NL Q+I  F+N LP    DLP+++VRR G E  H+D  VRR +V  A+ WL+ NNPF+ +I I+ D + +LP+NG   +L
Sbjct:  151 CKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDEL 291          
BLAST of mRNA_F-serratus_M_contig631.17167.1 vs. uniprot
Match: A0A7D9LMQ1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LMQ1_PARCT)

HSP 1 Score: 173 bits (438), Expect = 2.390e-49
Identity = 83/141 (58.87%), Postives = 103/141 (73.05%), Query Frame = 1
Query:    1 CKRDKKPVKSFSHANDMDPGSVPNQLKGLTQVEEMLIAKGCPIMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAKDLPIIVVRRQGGEGAHKDLLVRRQRVFTALNWLRVNNPFYSDIHINDDNLNALPDNGSLQDL 423
            CKRDKK  K FS  NDMDPG VP QL+GLTQVEEMLI++ CPIMRVYR  GGQRGY GHV+NL Q+I  F+N LP    DLP+++VRR G E  H+D  VRR +V  A+ WL+ NNPF+ +I I+ D + +LP+NG   +L
Sbjct:  140 CKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDEL 280          
BLAST of mRNA_F-serratus_M_contig631.17167.1 vs. uniprot
Match: UPI00106CBCF8 (uncharacterized protein LOC114518711 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CBCF8)

HSP 1 Score: 177 bits (450), Expect = 7.380e-49
Identity = 85/141 (60.28%), Postives = 106/141 (75.18%), Query Frame = 1
Query:    1 CKRDKKPVKSFSHANDMDPGSVPNQLKGLTQVEEMLIAKGCPIMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAKDLPIIVVRRQGGEGAHKDLLVRRQRVFTALNWLRVNNPFYSDIHINDDNLNALPDNGSLQDL 423
            CKRDKK  K+FS  NDMDPG VP QL+GLTQVEEMLI++ CPIM+VYR  GGQRGY GHV+NL Q+I  F+N LP    DLP+++VRRQG +  HKD  VRR RV  A+ WL+ NNPF+ DI I+ D + +LP+NG  ++L
Sbjct:  325 CKRDKKSPKNFSAGNDMDPGIVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRQGADETHKDFTVRRHRVLEAILWLKTNNPFFKDIEIDRDVIQSLPENGIPKEL 465          
BLAST of mRNA_F-serratus_M_contig631.17167.1 vs. uniprot
Match: A0A7D9I697_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I697_PARCT)

HSP 1 Score: 172 bits (435), Expect = 1.100e-48
Identity = 83/141 (58.87%), Postives = 104/141 (73.76%), Query Frame = 1
Query:    1 CKRDKKPVKSFSHANDMDPGSVPNQLKGLTQVEEMLIAKGCPIMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAKDLPIIVVRRQGGEGAHKDLLVRRQRVFTALNWLRVNNPFYSDIHINDDNLNALPDNGSLQDL 423
            CKRDKK  K FS  NDMDPG+VP QL+GLTQVEEMLI++ CPIMRVYR  GGQRGY GHV+NL Q+I  F+N LP    DLP+++VRR G E AH+D  VRR +V   + WL+ NNPF+ +I I+ D + +LP+NG   +L
Sbjct:  254 CKRDKKLPKKFSAKNDMDPGTVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDAHQDFTVRRHKVLEDVLWLKTNNPFFKNIKIDRDVIQSLPENGIPNEL 394          
BLAST of mRNA_F-serratus_M_contig631.17167.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.170e-48
Identity = 103/179 (57.54%), Postives = 126/179 (70.39%), Query Frame = 1
Query:    1 CKRDKKPVKSFSHANDMDPGSVPNQLKGLTQVEEMLIAKGCPIMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAKDLPIIVVRRQGGE-GAHKDLLVRRQRVFTALNWLRVNNPFYSDIHINDDNLNALPDNGSLQDLYESCEGDGIDAERDTGP--QQGGASGGN--EDTESFL 522
            CK+DKK  K FS  N MDPGSVP +L+GLTQ EEMLIA+ CPIMRV  LKGGQ GYGGHVVN+AQ+I     +LPR A D+PII++RR+G E G HKDL VRR RV  AL WL  NNP+Y DI +++  L+ LP +G L+ L  +  G   D+ERD GP  + GG   G+  EDTESF+
Sbjct:  136 CKKDKKSPKLFSADNTMDPGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAADVPIIIIRREGQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTALSQLPVDGQLRGLRTTVSGG--DSERDLGPRGEGGGEEDGDTPEDTESFM 312          
BLAST of mRNA_F-serratus_M_contig631.17167.1 vs. uniprot
Match: UPI00106D8CF5 (uncharacterized protein LOC114518658 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D8CF5)

HSP 1 Score: 176 bits (446), Expect = 4.650e-48
Identity = 83/141 (58.87%), Postives = 107/141 (75.89%), Query Frame = 1
Query:    1 CKRDKKPVKSFSHANDMDPGSVPNQLKGLTQVEEMLIAKGCPIMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAKDLPIIVVRRQGGEGAHKDLLVRRQRVFTALNWLRVNNPFYSDIHINDDNLNALPDNGSLQDL 423
            C+RDKK  K+FS  NDMDPG VP QL+GLTQVEEMLI++ CPIM+VYR  GGQRGY GHV+NL Q+I  F+N LP    DLP+++VRR+G +  HKD  VRR +VF A+ WL+ NNPF+ DI I+ D + +LP+NG  ++L
Sbjct:  245 CQRDKKSPKNFSAGNDMDPGIVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRRGADQTHKDFTVRRHKVFEAILWLKTNNPFFKDIEIDRDVIQSLPENGIPEEL 385          
BLAST of mRNA_F-serratus_M_contig631.17167.1 vs. uniprot
Match: A0A6S7JBU2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBU2_PARCT)

HSP 1 Score: 163 bits (412), Expect = 4.900e-48
Identity = 81/136 (59.56%), Postives = 99/136 (72.79%), Query Frame = 1
Query:    1 CKRDKKPVKSFSHANDMDPGSVPNQLKGLTQVEEMLIAKGCPIMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAKDLPIIVVRRQGGEGAHKDLLVRRQRVFTALNWLRVNNPFYSDIHINDDNLNALPDNG 408
            CKRDKK  K FS  NDMDPG VP QL+GLTQVEEMLI++ CPIMRVYR  GGQRGY GHV+NL Q+I  F+N LP    DLP+++VRR G E    D  VRR +V  A+ WL+ NNPF+ +I I+ D + +LP+NG
Sbjct:   40 CKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAE----DFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENG 171          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig631.17167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00106C8F717.340e-5359.57uncharacterized protein LOC114545138 n=1 Tax=Dendr... [more]
A0A6H5J8Y8_9PHAE1.220e-4956.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S7G3B5_PARCT1.300e-4960.90Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7JXT5_PARCT2.140e-4958.87Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A7D9LMQ1_PARCT2.390e-4958.87Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
UPI00106CBCF87.380e-4960.28uncharacterized protein LOC114518711 n=1 Tax=Dendr... [more]
A0A7D9I697_PARCT1.100e-4858.87Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6H5L976_9PHAE1.170e-4857.54ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
UPI00106D8CF54.650e-4858.87uncharacterized protein LOC114518658 n=1 Tax=Dendr... [more]
A0A6S7JBU2_PARCT4.900e-4859.56Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig631contigF-serratus_M_contig631:40854..41375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score129.0
Seed ortholog evalue2.1e-27
Seed eggNOG ortholog588596.U9UFR6
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs3ABUV@33154,3P9IP@4751,COG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Exons1
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931948.8395834-CDS-F-serratus_M_contig631:40853..413751622931948.8395834-CDS-F-serratus_M_contig631:40853..41375Fucus serratus maleCDSF-serratus_M_contig631 40854..41375 +
1690964071.7920156-CDS-F-serratus_M_contig631:40853..413751690964071.7920156-CDS-F-serratus_M_contig631:40853..41375Fucus serratus maleCDSF-serratus_M_contig631 40854..41375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig631.17167.1prot_F-serratus_M_contig631.17167.1Fucus serratus malepolypeptideF-serratus_M_contig631 40854..41375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig631.17167.1

>prot_F-serratus_M_contig631.17167.1 ID=prot_F-serratus_M_contig631.17167.1|Name=mRNA_F-serratus_M_contig631.17167.1|organism=Fucus serratus male|type=polypeptide|length=174bp
CKRDKKPVKSFSHANDMDPGSVPNQLKGLTQVEEMLIAKGCPIMRVYRLK
GGQRGYGGHVVNLAQNIGDFVNSLPRPAKDLPIIVVRRQGGEGAHKDLLV
RRQRVFTALNWLRVNNPFYSDIHINDDNLNALPDNGSLQDLYESCEGDGI
DAERDTGPQQGGASGGNEDTESFL
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mRNA from alignment at F-serratus_M_contig631:40854..41375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig631.17167.1 ID=mRNA_F-serratus_M_contig631.17167.1|Name=mRNA_F-serratus_M_contig631.17167.1|organism=Fucus serratus male|type=mRNA|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig631:40854..41375+ (Fucus serratus male)
TGCAAGCGCGACAAAAAACCTGTTAAGTCTTTCTCTCATGCAAACGACAT GGACCCTGGATCTGTGCCCAACCAACTCAAGGGGCTCACTCAGGTGGAGG AGATGCTTATCGCCAAAGGCTGTCCCATCATGCGTGTCTATCGCCTGAAG GGGGGACAGCGAGGGTATGGCGGTCACGTCGTTAACTTGGCGCAGAATAT TGGTGATTTCGTCAACAGTCTACCACGGCCTGCGAAGGACCTTCCAATAA TTGTCGTGCGGCGTCAAGGCGGGGAGGGCGCCCACAAAGACCTATTGGTG CGCCGGCAGAGGGTATTCACCGCCCTGAACTGGCTCCGGGTAAACAACCC GTTCTACAGCGATATCCACATCAACGACGACAACCTCAATGCCCTGCCGG ATAACGGTTCCCTGCAAGACCTATACGAGTCGTGCGAGGGTGATGGAATC GATGCCGAACGGGACACTGGACCTCAACAGGGCGGTGCGTCTGGGGGGAA CGAAGACACAGAGTCTTTTCTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig631:40854..41375+

>mRNA_F-serratus_M_contig631.17167.1 ID=mRNA_F-serratus_M_contig631.17167.1|Name=mRNA_F-serratus_M_contig631.17167.1|organism=Fucus serratus male|type=CDS|length=1044bp|location=Sequence derived from alignment at F-serratus_M_contig631:40854..41375+ (Fucus serratus male)
TGCAAGCGCGACAAAAAACCTGTTAAGTCTTTCTCTCATGCAAACGACAT
GGACCCTGGATCTGTGCCCAACCAACTCAAGGGGCTCACTCAGGTGGAGG
AGATGCTTATCGCCAAAGGCTGTCCCATCATGCGTGTCTATCGCCTGAAG
GGGGGACAGCGAGGGTATGGCGGTCACGTCGTTAACTTGGCGCAGAATAT
TGGTGATTTCGTCAACAGTCTACCACGGCCTGCGAAGGACCTTCCAATAA
TTGTCGTGCGGCGTCAAGGCGGGGAGGGCGCCCACAAAGACCTATTGGTG
CGCCGGCAGAGGGTATTCACCGCCCTGAACTGGCTCCGGGTAAACAACCC
GTTCTACAGCGATATCCACATCAACGACGACAACCTCAATGCCCTGCCGG
ATAACGGTTCCCTGCAAGACCTATACGAGTCGTGCGAGGGTGATGGAATC
GATGCCGAACGGGACACTGGACCTCAACAGGGCGGTGCGTCTGGGGGGAA
CGAAGACACAGAGTCTTTTCTTTGCAAGCGCGACAAAAAACCTGTTAAGT
CTTTCTCTCATGCAAACGACATGGACCCTGGATCTGTGCCCAACCAACTC
AAGGGGCTCACTCAGGTGGAGGAGATGCTTATCGCCAAAGGCTGTCCCAT
CATGCGTGTCTATCGCCTGAAGGGGGGACAGCGAGGGTATGGCGGTCACG
TCGTTAACTTGGCGCAGAATATTGGTGATTTCGTCAACAGTCTACCACGG
CCTGCGAAGGACCTTCCAATAATTGTCGTGCGGCGTCAAGGCGGGGAGGG
CGCCCACAAAGACCTATTGGTGCGCCGGCAGAGGGTATTCACCGCCCTGA
ACTGGCTCCGGGTAAACAACCCGTTCTACAGCGATATCCACATCAACGAC
GACAACCTCAATGCCCTGCCGGATAACGGTTCCCTGCAAGACCTATACGA
GTCGTGCGAGGGTGATGGAATCGATGCCGAACGGGACACTGGACCTCAAC
AGGGCGGTGCGTCTGGGGGGAACGAAGACACAGAGTCTTTTCTT
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