mRNA_F-serratus_M_contig6308.17164.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6308.17164.1
Unique NamemRNA_F-serratus_M_contig6308.17164.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6308.17164.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 128 bits (322), Expect = 3.930e-33
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 PEELDEELRFIRNARDLARVSFIDNINTEAYRGSLILLDLGAFSRPGINGPFIDSDRQAGFVNFG 195
            PEELDEELRFIRNARDLARVSF+DNINTEAYRGSLILL+LGAFSRPGINGPFIDSDRQAGFVNFG
Sbjct:  374 PEELDEELRFIRNARDLARVSFVDNINTEAYRGSLILLELGAFSRPGINGPFIDSDRQAGFVNFG 438
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BLAST of mRNA_F-serratus_M_contig6308.17164.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 109 bits (272), Expect = 2.120e-26
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 PEELDEELRFIRNARDLARVSFIDNINTEAYRGSLILLDLGAFSRPGINGPFIDSDRQAGFVNFG 195
            PE LD+ELRF+RNARDLARV+F DNINTEAYRG+LILL L AF+R G+NGPFID DRQAGFVNFG
Sbjct:  255 PELLDDELRFVRNARDLARVTFTDNINTEAYRGALILLGLDAFNRAGVNGPFIDIDRQAGFVNFG 319
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BLAST of mRNA_F-serratus_M_contig6308.17164.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 9.390e-16
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    7 ELDEELRFIRNARDLARVSFIDNINTEAYRGSLILLD-------LGAFSRPGINGPFIDSDRQAGFVNFG 195
            +LD+E R+IRN+RDL+R+   D +NTEAYR +LILLD         A S PG+NGP+ DS RQAGFVN+G
Sbjct:  312 DLDDEDRYIRNSRDLSRLVATDTVNTEAYRAALILLDPDQGADGRAAISAPGLNGPYADSSRQAGFVNYG 381
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BLAST of mRNA_F-serratus_M_contig6308.17164.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.390e-15
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   25 RFIRNARDLARVSFIDNINTEAYRGSLILLDLGAFSRPGINGPFIDSDRQAGFVNFG 195
            R+IRN+RDL+R+   D +NTEAYR +LILL+ GA S PG NGP+  S RQAGFVN+G
Sbjct:  318 RYIRNSRDLSRLVAADTVNTEAYRAALILLEQGAISGPGSNGPYAGSSRQAGFVNYG 374
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BLAST of mRNA_F-serratus_M_contig6308.17164.1 vs. uniprot
Match: B7ZGM5_9PHAE (Putative vanadium-dependent bromoperoxidase 7 (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM5_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.920e-6
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:   28 FIRNARDLARVSFIDNINTEAYRGSLILLDLGAFSRPGINGPFIDSDRQAGFVNFG 195
            FIRN RDLA +SF D + TEA+R +LIL         G  GP+ +S RQ GF  FG
Sbjct:   83 FIRNGRDLANLSFNDQLYTEAFRAALILFSESVLG--GSIGPYAESLRQQGFTTFG 136
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BLAST of mRNA_F-serratus_M_contig6308.17164.1 vs. uniprot
Match: B7ZGM1_9PHAE (Putative vanadium-dependent bromoperoxidase 3 n=4 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.960e-6
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:   28 FIRNARDLARVSFIDNINTEAYRGSLILLDLGAFSRPGINGPFIDSDRQAGFVNFG 195
            FIRN RDLA +SF D + TEA+R +LIL         G  GP+ +S RQ GF  FG
Sbjct:  300 FIRNGRDLANLSFNDQLYTEAFRAALILFSESVLG--GSIGPYAESLRQQGFTTFG 353
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6308.17164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
O82433_FUCDI3.930e-3396.92Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO2.120e-2681.54Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
Q4LDE6_9PHAE9.390e-1657.14Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
B7ZGM6_9PHAE2.390e-1563.16Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
B7ZGM5_9PHAE2.920e-650.00Putative vanadium-dependent bromoperoxidase 7 (Fra... [more]
B7ZGM1_9PHAE2.960e-650.00Putative vanadium-dependent bromoperoxidase 3 n=4 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6308contigF-serratus_M_contig6308:30639..31023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size197
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931948.3464093-CDS-F-serratus_M_contig6308:30640..307521622931948.3464093-CDS-F-serratus_M_contig6308:30640..30752Fucus serratus maleCDSF-serratus_M_contig6308 30641..30752 -
1690964071.4540272-CDS-F-serratus_M_contig6308:30640..307521690964071.4540272-CDS-F-serratus_M_contig6308:30640..30752Fucus serratus maleCDSF-serratus_M_contig6308 30641..30752 -
1622931948.3608158-CDS-F-serratus_M_contig6308:30940..310231622931948.3608158-CDS-F-serratus_M_contig6308:30940..31023Fucus serratus maleCDSF-serratus_M_contig6308 30941..31023 -
1690964071.467675-CDS-F-serratus_M_contig6308:30940..310231690964071.467675-CDS-F-serratus_M_contig6308:30940..31023Fucus serratus maleCDSF-serratus_M_contig6308 30941..31023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6308.17164.1prot_F-serratus_M_contig6308.17164.1Fucus serratus malepolypeptideF-serratus_M_contig6308 30641..31023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6308.17164.1

>prot_F-serratus_M_contig6308.17164.1 ID=prot_F-serratus_M_contig6308.17164.1|Name=mRNA_F-serratus_M_contig6308.17164.1|organism=Fucus serratus male|type=polypeptide|length=65bp
PEELDEELRFIRNARDLARVSFIDNINTEAYRGSLILLDLGAFSRPGING
PFIDSDRQAGFVNFG
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mRNA from alignment at F-serratus_M_contig6308:30639..31023-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6308.17164.1 ID=mRNA_F-serratus_M_contig6308.17164.1|Name=mRNA_F-serratus_M_contig6308.17164.1|organism=Fucus serratus male|type=mRNA|length=385bp|location=Sequence derived from alignment at F-serratus_M_contig6308:30639..31023- (Fucus serratus male)
CCCGAAGAGTTAGACGAAGAGCTGCGTTTTATCCGTAATGCCCGCGACCT
GGCCAGGGTCTCCTTCATTGACAATATCAATACGTGAGTAATTCTAACTA
ATTACAGTCGAGTACCTTGAACTTTTCTTTAGCTCTCTAGACAGCCCTTT
ACGACACCATCCATGGAAACCTTCTTGCTCATTTCCGACTCTCCCGAGGT
CATAAACTTGTTCTCACGCGATGTTATAAACCTTAACAACCGCATTTCCC
CCTCTTTTTTTGAACCACCAGCGAAGCTTATCGCGGATCTCTTATCCTAC
TTGACCTGGGAGCCTTCAGCAGGCCCGGTATCAACGGTCCATTCATCGAC
AGTGATCGGCAGGCGGGCTTCGTCAACTTCGGCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6308:30639..31023-

>mRNA_F-serratus_M_contig6308.17164.1 ID=mRNA_F-serratus_M_contig6308.17164.1|Name=mRNA_F-serratus_M_contig6308.17164.1|organism=Fucus serratus male|type=CDS|length=390bp|location=Sequence derived from alignment at F-serratus_M_contig6308:30639..31023- (Fucus serratus male)
CCCGAAGAGTTAGACGAAGAGCTGCGTTTTATCCGTAATGCCCGCGACCT
GGCCAGGGTCTCCTTCATTGACAATATCAATACCCCGAAGAGTTAGACGA
AGAGCTGCGTTTTATCCGTAATGCCCGCGACCTGGCCAGGGTCTCCTTCA
TTGACAATATCAATACCGAAGCTTATCGCGGATCTCTTATCCTACTTGAC
CTGGGAGCCTTCAGCAGGCCCGGTATCAACGGTCCATTCATCGACAGTGA
TCGGCAGGCGGGCTTCGTCAACTTCGGCCGAAGCTTATCGCGGATCTCTT
ATCCTACTTGACCTGGGAGCCTTCAGCAGGCCCGGTATCAACGGTCCATT
CATCGACAGTGATCGGCAGGCGGGCTTCGTCAACTTCGGC
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