mRNA_F-serratus_M_contig630.17160.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig630.17160.1 vs. uniprot
Match: D8LS03_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS03_ECTSI) HSP 1 Score: 370 bits (950), Expect = 1.710e-109 Identity = 259/635 (40.79%), Postives = 321/635 (50.55%), Query Frame = 2
Query: 3746 DPTVIARPWDIFLCRYQDAYEEELSLQRLMELGAAFKKPQVGASVAAVPHRPLRATGDHKVGSSTGGGETDLGPGDGRVWRTAAKPGAQRVLGAMSMATLWGHRNK---------DTVISASIHDDAEYFVSEIASLLMQMNANGREVGITYWESPERKCLNDSRLPLPAEEEVFLATRSAAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLMAKQQMAKQEAR---IAWNDAPGGWKEHSHCHSGPVIIWRAGPTRSRAKAKGDFVEHCCAALVSTAHVPPGVELMLVDGFLQGTGVLETSTAFRPYRRRAWSPLAVPKGGSFPGKSTEDISKLPP-CTVRLHWRKIIVEVGKVPRKPETLYVCSSRPAAIASAAVSADDWDGSGAPRGLLLGKAEGNGCAAFFSQDEMEIPLGTAPWAALNNKNKNSVNSTIKPT---------SWSRRGGXXXTPAKQPGDQHHYYQGPRLHFQACIVCQRFGENGSGSSSASGGGDNGENLNQNGSDSNGSTSRPSVRGP---GPLLFCSTCPASFHLPCLRPRLRVMPKGAWTESSNGGXXXXXXXXXXWSCAYCYATGRAIGGDSDGACGAVRLMESLRQGMQNAVRVNTKRTLRYKAFG 5575
D ++A+P D+F+CR+++ YEE +SL RL +LGA+F + + AA S+ GG + GPG GR + KPGAQR+L AMSM++LW H+ + +TV+SASIHDDAE V E LL M GRE+G+++WESPERKCLN+ LPLP LA AAA XXXXXXXXXXXXXXXX R KQ + KQ W PGGW E HCH+ P+++W GP+R+R +AKG+FV+HC AA++ ++H PPG ELML+DGFL GTGVLE F+ YRRR W+ L+ G + KLPP T RL W+K +G A +GTAPW A + N T P XXX QGP HF+ACIVCQR G + +G++ D P RGP GPLL CSTCPA+FHL CLRPRLR MP+G + GG WSCAYC+A GR +GGD+DGACGAVRLMESLRQGM VRVN RTLRY A G
Sbjct: 7 DRKIVAKPTDLFVCRFKEGYEENISLARLRQLGASFSFTRAPITAAAFT-------------SAVSGGLANQGPGGGRRFEGPVKPGAQRILDAMSMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELTVHEALRLLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAXXXXXXXXXXXXXXXXXLTKG--------------RVGCGKQGLQKQHPGGVVPVWPKIPGGWAEPRHCHTAPLVVWATGPSRARVRAKGEFVDHCSAAMLGSSHFPPGAELMLMDGFLHGTGVLEKHAVFQRYRRRPWAQLSPEDAPGLQGPA-----KLPPGATTRLQWKK---------------------------------------------------DGAA-----------VGTAPWTAALDSTTNEERKTSTPEIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGP--HFRACIVCQRPGTDSNGAAV----------------DGPAPPCLPQARGPAAAGPLLLCSTCPAAFHLSCLRPRLRKMPEG----TGEGGSAK-------WSCAYCHAMGRVVGGDADGACGAVRLMESLRQGMHGTVRVNAMRTLRYNALG 518
BLAST of mRNA_F-serratus_M_contig630.17160.1 vs. uniprot
Match: A0A6H5KX53_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX53_9PHAE) HSP 1 Score: 389 bits (1000), Expect = 3.460e-106 Identity = 275/652 (42.18%), Postives = 343/652 (52.61%), Query Frame = 2
Query: 3746 DPTVIARPWDIFLCRYQDAYEEELSLQRLMELGAAFKKPQVGASVAAVPHRPLRATGDHKVGSSTGGGETDLGPGDGRVWRTAAKPGAQRVLGAMSMATLWGHRNK---------DTVISASIHDDAEYFVSE----IASLLMQMNANGREVGITYWESPERKCLNDSRLPLPAEEEVFLATRSAAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLMAKQQMAKQEAR---IAWNDAPGGWKEHSHCHSGPVIIWRAGPTRSRAKAKGDFVEHCCAALVSTAHVPPGVELMLVDGFLQGTGVLETSTAFRPYRRRAWSPLAVPKGGSFPGKSTEDISKLPP-CTVRLHWRKIIVEVGKVPRKPETLYVCSSRPAAIASAAVSADDWDGSGAPRGLLLGKAEGNGCAAFFSQDEMEIPLGTAPWAALNNKNKNSVNSTIKP---TSWSRRGGXXXTPAKQPGDQHHYY-------------------QGPRLHFQACIVCQRFGENGSGSSSASGGGDNGENLNQNGSDSNGSTSRPSVRGP---GPLLFCSTCPASFHLPCLRPRLRVMPKGAWTESSNGGXXXXXXXXXXWSCAYCYATGRAIGGDSDGACGAVRLMESLRQGMQNAVRVNTKRTLRYKAFG 5575
D ++ARP D+F+ +++ YEE +SL RL +LGA+F + A + A P S+ G + GPG GR + AKPGAQ++L AMSM++LW H+ + +TV+SASIHDDAE V E + LL M GRE+G+++WESPERKCLN+ LPLP LA AA XXXXXXXXXXXXXXXX KQ + KQ A W PGGW E HCH P+++W GP+R+R +AKG+F++HC AA++ ++H P G ELMLVDGFL GTGVLE F+ YRRR W L+ G + KLPP T RL W+K ++VGKVPR +++YVCSSR A SA+ G+ G QD +GTAPW A + + N T P T+ + P QGP HF+ACIVCQR G + +G + D S RGP GPLL CSTCPA+FHL CLRPRLR MP+G +S GG WSCAYC+A GR IGGD+DGACGAVRLMESLRQGM AVRVN RTLRY A G
Sbjct: 1200 DRKIVARPTDLFV--FKEGYEENISLARLRQLGASFSFTR--APITAAPFT-----------SAASDGLANQGPGGGRRFEGPAKPGAQQILDAMSMSSLWNHKMRGGVGPSAKGETVVSASIHDDAELMVHEALRQVLLLLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLARLADEDAAXXXXXXXXXXXXXXXXXXVTKGKVGC--------------GKQGLQKQHAGGVVPVWPKIPGGWAEPRHCHIAPLVVWATGPSRARVRAKGEFMDHCSAAMLGSSHFPRGAELMLVDGFLHGTGVLEKHAVFQRYRRRPWPQLSPEDAVRLQGPA-----KLPPGATTRLQWKKKFLQVGKVPRSQQSIYVCSSREGLEAVTMTSANTRGNDGSTAGXXXXXXX----XXXVCQDG--AAMGTAPWTAALDSSTNEDRKTSTPEIPTTATAAANATHAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQGP--HFRACIVCQRPGTDSNGVAV----------------DEPAPPSLLQTRGPAAAGPLLLCSTCPAAFHLSCLRPRLRKMPEG----TSEGGSAK-------WSCAYCHAMGRVIGGDADGACGAVRLMESLRQGMHGAVRVNALRTLRYNALG 1782
BLAST of mRNA_F-serratus_M_contig630.17160.1 vs. uniprot
Match: D8LS02_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS02_ECTSI) HSP 1 Score: 107 bits (267), Expect = 1.340e-19 Identity = 68/196 (34.69%), Postives = 94/196 (47.96%), Query Frame = 1
Query: 577 GGNLSRHLSDLKAAEKNGRGIRSKFSGARGGAAGLDDGVEGDVSKMRKYI-------GRPRRLSFDDQIAVLRHAFWSDIWPALRECVRGYIACTVLAGWNLQHVIQGSRHARFYFPPGISRGPGMLVRRDFFDSVKQLIPKVMSMPEWQPLCTRIIEEAQ--EGNRIIPS-----PLPPSLRVPATKGLKTVSGG 1122
GG LSR L A E ++ GA+ DG S K+ + ++L D+ +LRHAFW D+WP L + GW + HV+QG RHAR+YFP G+ RG G +R D+FDS+K I V MP+W+PL I+ + Q +G ++PS P P S + G K GG
Sbjct: 459 GGTLSRESFPLDAGESYAAAAGTEVGS---GASPKSDGNSSSSSSKGKFSLLAKRMPVKAKQLRVKDKAMILRHAFWKDVWPHLLK-----------DGWKMHHVMQGDRHARYYFPTGVIRGQGNRLRIDYFDSIKHSIECVRRMPKWKPLIEEILRKHQGSDGAYLVPSSPVTPPAPKSAPTHTSSGRKVKRGG 640
BLAST of mRNA_F-serratus_M_contig630.17160.1 vs. uniprot
Match: A0A7S3YUQ4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YUQ4_9EUKA) HSP 1 Score: 60.1 bits (144), Expect = 4.300e-5 Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 2
Query: 3998 KPGAQRVLGAMSMATLWGHRNKDTVISASIHDDAEYFVSEIASLLMQMNANGREVGITYWESPERKCLNDSRLPL 4222
K G V+ AM +TLW H + V +HD+A + E+ ++ + A R +TYWES E C N+S LPL
Sbjct: 275 KSGGHWVICAMRFSTLWEHEGPEIVAVVDVHDNASLMLKELHKIVHLLGAQKRTHALTYWESDEPVCANNSSLPL 349 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig630.17160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig630.17160.1 >prot_F-serratus_M_contig630.17160.1 ID=prot_F-serratus_M_contig630.17160.1|Name=mRNA_F-serratus_M_contig630.17160.1|organism=Fucus serratus male|type=polypeptide|length=1402bp MKRAREATDAAPDAVVENAAPAEEKVEEITEKTATWADTAVAVDEADVAVback to top mRNA from alignment at F-serratus_M_contig630:338073..365061- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig630.17160.1 ID=mRNA_F-serratus_M_contig630.17160.1|Name=mRNA_F-serratus_M_contig630.17160.1|organism=Fucus serratus male|type=mRNA|length=26989bp|location=Sequence derived from alignment at F-serratus_M_contig630:338073..365061- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig630:338073..365061- >mRNA_F-serratus_M_contig630.17160.1 ID=mRNA_F-serratus_M_contig630.17160.1|Name=mRNA_F-serratus_M_contig630.17160.1|organism=Fucus serratus male|type=CDS|length=8412bp|location=Sequence derived from alignment at F-serratus_M_contig630:338073..365061- (Fucus serratus male)back to top |