mRNA_F-serratus_M_contig63.17149.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig63.17149.1
Unique NamemRNA_F-serratus_M_contig63.17149.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig63.17149.1 vs. uniprot
Match: A0A4V1J5M7_9FUNG (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4V1J5M7_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 4.020e-5
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  264 EPPTCGLANLGNTCFLNSVLQNLFKTRLLR 353
            +PPTCGL NLGNTCF NSVLQ L  TR LR
Sbjct:  168 QPPTCGLTNLGNTCFFNSVLQALLATRPLR 197
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig63.17149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4V1J5M7_9FUNG4.020e-576.67Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dima... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig63contigF-serratus_M_contig63:949614..949972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931943.4020743-CDS-F-serratus_M_contig63:949613..9499251622931943.4020743-CDS-F-serratus_M_contig63:949613..949925Fucus serratus maleCDSF-serratus_M_contig63 949614..949925 +
1690964068.8170915-CDS-F-serratus_M_contig63:949613..9499251690964068.8170915-CDS-F-serratus_M_contig63:949613..949925Fucus serratus maleCDSF-serratus_M_contig63 949614..949925 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931943.4189587-UTR-F-serratus_M_contig63:949925..9499721622931943.4189587-UTR-F-serratus_M_contig63:949925..949972Fucus serratus maleUTRF-serratus_M_contig63 949926..949972 +
1690964068.8282728-UTR-F-serratus_M_contig63:949925..9499721690964068.8282728-UTR-F-serratus_M_contig63:949925..949972Fucus serratus maleUTRF-serratus_M_contig63 949926..949972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig63.17149.1prot_F-serratus_M_contig63.17149.1Fucus serratus malepolypeptideF-serratus_M_contig63 949614..949925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig63.17149.1

>prot_F-serratus_M_contig63.17149.1 ID=prot_F-serratus_M_contig63.17149.1|Name=mRNA_F-serratus_M_contig63.17149.1|organism=Fucus serratus male|type=polypeptide|length=104bp
NFSAHLSPIITVFPTIASFYAAWRLSTSTLGAFLTNANVAKKCPRKPPRS
GRTALNELRHVALSPSASPVLLVPRQCRNYRARKIPGGSRRRVDLPTLAI
LVS*
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mRNA from alignment at F-serratus_M_contig63:949614..949972+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig63.17149.1 ID=mRNA_F-serratus_M_contig63.17149.1|Name=mRNA_F-serratus_M_contig63.17149.1|organism=Fucus serratus male|type=mRNA|length=359bp|location=Sequence derived from alignment at F-serratus_M_contig63:949614..949972+ (Fucus serratus male)
AACTTTTCCGCTCACCTTTCCCCTATAATAACTGTGTTCCCAACAATTGC
TTCTTTTTACGCGGCCTGGCGGTTATCCACCTCGACTCTTGGCGCCTTCC
TCACCAATGCCAACGTCGCTAAAAAGTGCCCAAGAAAGCCGCCAAGAAGC
GGGCGAACCGCTCTAAACGAGCTTCGACACGTTGCACTGAGTCCATCAGC
ATCGCCAGTGTTGCTAGTGCCCCGGCAGTGTCGAAACTATCGCGCACGAA
AGATCCCGGGTGGGAGCCGCCGACGTGTGGACTTGCCAACCTTGGCAATA
CTTGTTTCTTGAACTCGGTCCTTCAAAACCTGTTCAAGACTCGCTTGTTG
CGCCAAGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig63:949614..949972+

>mRNA_F-serratus_M_contig63.17149.1 ID=mRNA_F-serratus_M_contig63.17149.1|Name=mRNA_F-serratus_M_contig63.17149.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig63:949614..949972+ (Fucus serratus male)
AACTTTTCCGCTCACCTTTCCCCTATAATAACTGTGTTCCCAACAATTGC
TTCTTTTTACGCGGCCTGGCGGTTATCCACCTCGACTCTTGGCGCCTTCC
TCACCAATGCCAACGTCGCTAAAAAGTGCCCAAGAAAGCCGCCAAGAAGC
GGGCGAACCGCTCTAAACGAGCTTCGACACGTTGCACTGAGTCCATCAGC
ATCGCCAGTGTTGCTAGTGCCCCGGCAGTGTCGAAACTATCGCGCACGAA
AGATCCCGGGTGGGAGCCGCCGACGTGTGGACTTGCCAACCTTGGCAATA
CTTGTTTCTTGAAACTTTTCCGCTCACCTTTCCCCTATAATAACTGTGTT
CCCAACAATTGCTTCTTTTTACGCGGCCTGGCGGTTATCCACCTCGACTC
TTGGCGCCTTCCTCACCAATGCCAACGTCGCTAAAAAGTGCCCAAGAAAG
CCGCCAAGAAGCGGGCGAACCGCTCTAAACGAGCTTCGACACGTTGCACT
GAGTCCATCAGCATCGCCAGTGTTGCTAGTGCCCCGGCAGTGTCGAAACT
ATCGCGCACGAAAGATCCCGGGTGGGAGCCGCCGACGTGTGGACTTGCCA
ACCTTGGCAATACTTGTTTCTTGA
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