mRNA_F-serratus_M_contig6292.17136.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: D7G8B5_ECTSI (Mitochondrial carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8B5_ECTSI) HSP 1 Score: 362 bits (930), Expect = 1.060e-120 Identity = 200/314 (63.69%), Postives = 233/314 (74.20%), Query Frame = 1
Query: 1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLDRAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVV----------GAIRSRLSDFPIF-SVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRR----SAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEV-EGSCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAERA 894
+GT AAL HIA+WEGPRGLYRG++ SLVMA+PS VLYYTVYDD L RL++AGVG++ P T+G+ AR+LATV MAPLELVRTR Q+ G + P+ SV ++++ V ++EG ALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGC R+ +A GG G AG A++RGSADFLLRS AGA+SG+VASLLTHPFDVVKTQ QV+V V E CEHRPPPP PRR PGTF+VMRNIV+S+G AGL+TGAL RVGKVAPACAIM+ SYEAGKRFF ERNA A
Sbjct: 128 TGTVAALMHIARWEGPRGLYRGLDASLVMAIPSTVLYYTVYDDFLARLEKAGVGNLAAPATAGSSARLLATVVMAPLELVRTRAQSHGXXXXXXXXXXXXXXXVATGPGRGAGLWGEIPLVGSVGRDLTKVFQEEGMAALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCGRKGGAPAASAAGGGGRGTAGL--AEERGSADFLLRSLVAGAVSGMVASLLTHPFDVVKTQRQVLVDVVPESGCEHRPPPP--PRREPGTFDVMRNIVKSKGPAGLFTGALARVGKVAPACAIMMISYEAGKRFFGERNAAAA 437
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: A0A6I9PAV6_9TELE (solute carrier family 25 member 40 n=4 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9PAV6_9TELE) HSP 1 Score: 182 bits (463), Expect = 7.750e-52 Identity = 122/301 (40.53%), Postives = 167/301 (55.48%), Query Frame = 1
Query: 1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEG---SCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAER 891
+GT A I + EG + L+ G+ +LVMAVP+ V+Y+T YD + L R G S P+ +GA+ARV + ++PLEL+RT++Q+QK + E+ IRS VR EG L+LWRG+G T+ RDVPFS +YW YE K+ L C+R RE L +F +GA+SG +AS++T PFDVVKT+ Q+ + E++ SC+ TF VMR IV G +GL+ G +PR+ KVAPACAIMI SYE GK FF + N ER
Sbjct: 84 NGTMDAFVKIVRHEGTKALWSGLPPTLVMAVPATVIYFTCYDQLCSALRVRMGDYSQEAPLLAGAVARVGSATVISPLELIRTQLQSQKQSY---RELTDCIRS----------------AVRSEGWLSLWRGLGPTLLRDVPFSAMYWYNYEKGKSWL-CERSHT-RE-------------------PTLTITFVSGAMSGSIASIVTLPFDVVKTRRQLELGELQAKNLSCQVSS----------STFSVMRRIVAQSGFSGLFAGFIPRLIKVAPACAIMISSYEFGKTFFRKHNEER 334
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: A0A1Y1YP69_9FUNG (Mitochondrial carrier n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YP69_9FUNG) HSP 1 Score: 181 bits (459), Expect = 5.200e-51 Identity = 111/295 (37.63%), Postives = 157/295 (53.22%), Query Frame = 1
Query: 4 GTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYD---DILGRLDRAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEGSCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAER 879
GTW + IA+ EG L++G+ +L+M +P+ +YY YD D + R V P G+IAR A C++P+EL+RTRVQ+ + T++ E + G VS +V++ G L+LW+G+ T+WRDVPFS +YW+GYE +K L + D+ +D +F AGA+SG +A+ LT PFDV KT +QV S + P +EVMRNI + G GL+TG +PRV KVAP+CAIMI SYE GK F E+
Sbjct: 116 GTWDGVVKIARHEGVTKLWKGLSPTLLMQLPATAIYYVGYDYMRDFIKLNIRDPVVEKYSPFIVGSIARTCAVTCISPIELIRTRVQSAASGTSLTEVMSG-----------------VSNMVKRAGVLSLWKGLSPTLWRDVPFSGLYWMGYETIKHQLKLNHTG-----------------DRLTPSDEFQFAFIAGAVSGSIAATLTTPFDVAKTHIQVDTSNDVTS-----------KAKPKVYEVMRNIFKKDGCRGLFTGLVPRVAKVAPSCAIMISSYEVGKALFREQ 365
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: A0A5A8CM33_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CM33_CAFRO) HSP 1 Score: 181 bits (458), Expect = 5.270e-51 Identity = 122/300 (40.67%), Postives = 163/300 (54.33%), Query Frame = 1
Query: 25 HIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSV---LGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRS-----------RLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEGSCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAER 879
H+A+ EG L+ G+ +LVMAVPS ++Y+T YD++ L+ R GS L P+ +G +AR A ++PLELVRT++QA A ++ GA R+ R + S+ ++ VR G +LWRGV T+WRDVPFSMVYWLGYE L+ RE G+++ D A +F AGA SG VA++LT PFDVVKT++QV + + R P R P T E + + G A L+TG RV KVAPACAIMI SYEA K F A R
Sbjct: 65 HVARTEGAAALWSGVLPTLVMAVPSTMMYFTAYDELKETLEGRTAPGSAVHQLAPLIAGGVARAGAATVVSPLELVRTKLQAPAAAKLLDAASSGASRAASPLQLARALGRAAGQAGSSMRLAIAEEVRLGGVASLWRGVVPTLWRDVPFSMVYWLGYERLRE---ASTALIARETGSSM--------DHPPIAQRFAVAFAAGAGSGSVAAVLTTPFDVVKTRVQVRLFRQQQEARRRGPGCAG-LRTPSTLEALLTVAREEGAASLFTGLGARVAKVAPACAIMISSYEACKLFLARR 352
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: A0A4W6BRM2_LATCA (Solute carrier family 25 member 40 n=28 Tax=Percomorphaceae TaxID=1489872 RepID=A0A4W6BRM2_LATCA) HSP 1 Score: 180 bits (457), Expect = 6.370e-51 Identity = 123/301 (40.86%), Postives = 167/301 (55.48%), Query Frame = 1
Query: 1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEG---SCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAER 891
+GT A I + EG + L+ G+ +LVMAVP+ V+Y+T YD + L R G + P+ +GAIARV + ++PLEL+RT++Q+QK + E+ IRS V EG L+LWRG+G T+ RDVPFS VYW YE K+ L C+R + RE F + +F +GA+SG +AS++T PFDVVKT+ QV + E++ SC+ TF VMR IV G GL+ G LPR+ KVAPACAIMI +YE GK FF + N ER
Sbjct: 86 NGTLDAFVKIVRCEGIKALWSGLPPTLVMAVPATVIYFTCYDQLCAALRVRMGAHAEEAPLLAGAIARVGSATVISPLELIRTKLQSQKQSY---RELTDCIRS----------------AVETEGWLSLWRGLGPTLLRDVPFSAVYWYNYEKGKSWL-CERYNT-RE------------------PTFTI-TFISGAVSGSIASIVTLPFDVVKTRRQVELGELQARNLSCQVSS----------STFSVMRRIVAQDGFVGLFAGFLPRLIKVAPACAIMISTYEFGKAFFHKHNQER 336
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: UPI0009B3DD95 (solute carrier family 25 member 40 isoform X2 n=1 Tax=Monopterus albus TaxID=43700 RepID=UPI0009B3DD95) HSP 1 Score: 179 bits (455), Expect = 6.390e-51 Identity = 121/299 (40.47%), Postives = 168/299 (56.19%), Query Frame = 1
Query: 1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEG-SCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAER 891
+GT A I + EG + L+ G+ +LVMAVP+ V+Y+T YD + L R G + P+ +GAIARV + ++PLEL+RT++Q+QK + E++ IRS V KEG L+LWRG+G T+ RDVPFS +YW YE K+ L C++ + RE F + +F +GA+SG +AS++T PFDVVKT+ QV + E++ + H+ T VMR IV G GL+ G LPR+ KVAPACAIMI SYE GK FF + N ER
Sbjct: 60 NGTVDAFVQIVRHEGIKALWSGLPPTLVMAVPATVIYFTCYDQLCAALKVRMGERAREAPLLAGAIARVGSATVISPLELIRTKLQSQKQSY---RELMDCIRS----------------AVEKEGRLSLWRGLGPTLLRDVPFSAMYWYNYERSKSWL-CEQYNT-RE------------------PTFAI-TFISGAVSGSIASIVTLPFDVVKTRRQVELGELQAKNLSHQVSS--------STLSVMRRIVAHNGFGGLFAGFLPRLIKVAPACAIMISSYEFGKAFFRKHNQER 310
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: W5MWD2_LEPOC (Solute carrier family 25 member 40 n=2 Tax=Lepisosteidae TaxID=7915 RepID=W5MWD2_LEPOC) HSP 1 Score: 179 bits (455), Expect = 1.200e-50 Identity = 122/298 (40.94%), Postives = 167/298 (56.04%), Query Frame = 1
Query: 1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEGSCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAER 891
+GT A I + EG + L+ G+ +LVMAVP+ V+Y+T YD + L R G S P+ +GA+ARV + ++PLEL+RT++Q+QK + L+ F SVA + G L+LWRG+G T+ RDVPFS +YW YE K L C++ A RE F++ +FT+GA+SG +AS++T PFDVVKT+ Q+ + E+E PR T VMR IV G+ GL+ G LPR+ KVAPACAIMI +YE GK FF RN ER
Sbjct: 85 TGTLDAFIKIIQKEGIKSLWSGLPPTLVMAVPATVIYFTCYDQLCAILKYRMGSDSNEAPLLAGALARVGSVTVISPLELIRTKMQSQKLSYR-----------ELNTFIRTSVAAD--------GWLSLWRGLGPTLLRDVPFSAMYWYNYELGKKWL-CEKNDA-RE------------------PTFMI-TFTSGAVSGSIASIITLPFDVVKTRRQIELGELEALN-------LSPRASSSTMHVMRRIVAENGVRGLFAGFLPRLIKVAPACAIMISTYEFGKAFFHRRNRER 335
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: A0A3Q3Q3H5_MONAL (Solute carrier family 25 member 40 n=11 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3Q3H5_MONAL) HSP 1 Score: 179 bits (455), Expect = 1.260e-50 Identity = 121/299 (40.47%), Postives = 168/299 (56.19%), Query Frame = 1
Query: 1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEG-SCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAER 891
+GT A I + EG + L+ G+ +LVMAVP+ V+Y+T YD + L R G + P+ +GAIARV + ++PLEL+RT++Q+QK + E++ IRS V KEG L+LWRG+G T+ RDVPFS +YW YE K+ L C++ + RE F + +F +GA+SG +AS++T PFDVVKT+ QV + E++ + H+ T VMR IV G GL+ G LPR+ KVAPACAIMI SYE GK FF + N ER
Sbjct: 86 NGTVDAFVQIVRHEGIKALWSGLPPTLVMAVPATVIYFTCYDQLCAALKVRMGERAREAPLLAGAIARVGSATVISPLELIRTKLQSQKQSY---RELMDCIRS----------------AVEKEGRLSLWRGLGPTLLRDVPFSAMYWYNYERSKSWL-CEQYNT-RE------------------PTFAI-TFISGAVSGSIASIVTLPFDVVKTRRQVELGELQAKNLSHQVSS--------STLSVMRRIVAHNGFGGLFAGFLPRLIKVAPACAIMISSYEFGKAFFRKHNQER 336
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: UPI0018D800CA (solute carrier family 25 member 40-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D800CA) HSP 1 Score: 180 bits (457), Expect = 1.320e-50 Identity = 119/295 (40.34%), Postives = 164/295 (55.59%), Query Frame = 1
Query: 1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLD-RAGVGSVLGPMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEGSCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERN 882
+GT A+ IAK EG L+ G+ +L+MAVP+ VLYYT YD + + + G S+L PM SG +ARV A ++PLELVRT++Q++ T E+V IR+ + D EG L+LWRG+G T+ RDVPFSM+ W+ YE +KA + C + R FL SF AGA+SG VA++LT PFDVVKT Q+ + E + + R T+ +M+ + RG GL+ G PR+ KV PACA+MI +YEAGK FF +RN
Sbjct: 119 NGTVDAMFKIAKNEGISKLWSGLPPTLLMAVPATVLYYTCYDQLKEWMGYQNGKSSMLIPMASGGLARVFAVTVISPLELVRTKMQSRPLTY---NELVSCIRTAIQD----------------EGWLSLWRGLGPTLLRDVPFSMILWVSYEYMKARV-CLKY-------------------HRKEPTFLA-SFLAGAVSGTVAAVLTSPFDVVKTHRQIELGEAMFNTKKD-----SSYRASSTWHIMQRLYAERGFRGLFAGISPRIAKVTPACAMMISTYEAGKAFFHKRN 368
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Match: A0A1S3RAF3_SALSA (solute carrier family 25 member 39-like isoform X4 n=6 Tax=Salmoninae TaxID=504568 RepID=A0A1S3RAF3_SALSA) HSP 1 Score: 178 bits (451), Expect = 2.590e-50 Identity = 127/302 (42.05%), Postives = 171/302 (56.62%), Query Frame = 1
Query: 1 SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLDRAGVGSVLG--PMTSGAIARVLATVCMAPLELVRTRVQAQKATTAVEEEVVGAIRSRLSDFPIFSVAKEVSMVVRKEGALALWRGVGTTMWRDVPFSMVYWLGYENLKAGLGCDRRSAGREGGANLGGAGQSRADQRGSADFLLRSFTAGAISGVVASLLTHPFDVVKTQLQVVVKEVEGSCEHRPPPPRQPRRVPGTFEVMRNIVESRGIAGLYTGALPRVGKVAPACAIMIFSYEAGKRFFAERNAERARQ 900
SGT A I + EG R L+RG+ +LVMAVP+ V+Y+T YD + L R G+G P+ +G +AR+ A ++PLELVRT++Q+QK T + E+ IRS V ++G L+LWRG G T+ RDVPFS +YW YE +KA L CD+ + A F + SFTAGAISG VA+++T PFDVVKT+ QV + E+E P + P T+ +MR I G GL+ G LPRV KVAPACA+MI +YE GK FF + N +R +Q
Sbjct: 66 SGTLDAFVKITRNEGVRSLWRGLPPTLVMAVPATVIYFTCYDQLRDLL-RYGMGFQGNYIPLVAGGLARLGAVSVISPLELVRTKMQSQKLTYS---ELRVCIRSS----------------VAQDGWLSLWRGWGPTVLRDVPFSALYWFNYELVKAQL-CDQYDVSQ-------------------ATFSI-SFTAGAISGAVAAIMTLPFDVVKTRRQVQLGEMETLGV----PVKNPT---STWHIMRGIWAESGYRGLFAGFLPRVIKVAPACAVMISTYEFGKIFFQKMNLDREQQ 319 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6292.17136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6292.17136.1 >prot_F-serratus_M_contig6292.17136.1 ID=prot_F-serratus_M_contig6292.17136.1|Name=mRNA_F-serratus_M_contig6292.17136.1|organism=Fucus serratus male|type=polypeptide|length=302bp SGTWAALRHIAKWEGPRGLYRGIEVSLVMAVPSIVLYYTVYDDILGRLDRback to top mRNA from alignment at F-serratus_M_contig6292:5504..6892+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6292.17136.1 ID=mRNA_F-serratus_M_contig6292.17136.1|Name=mRNA_F-serratus_M_contig6292.17136.1|organism=Fucus serratus male|type=mRNA|length=1389bp|location=Sequence derived from alignment at F-serratus_M_contig6292:5504..6892+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6292:5504..6892+ >mRNA_F-serratus_M_contig6292.17136.1 ID=mRNA_F-serratus_M_contig6292.17136.1|Name=mRNA_F-serratus_M_contig6292.17136.1|organism=Fucus serratus male|type=CDS|length=1812bp|location=Sequence derived from alignment at F-serratus_M_contig6292:5504..6892+ (Fucus serratus male)back to top |